Wall clock time and date at job start Tue Mar 31 2020 14:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42894 * 109.47211 * 2 1 4 4 C 1.53004 * 109.47079 * 240.00329 * 2 1 3 5 5 C 1.50696 * 109.47371 * 59.99993 * 4 2 1 6 6 C 1.38234 * 119.99794 * 269.72540 * 5 4 2 7 7 C 1.38234 * 119.99726 * 179.76522 * 6 5 4 8 8 C 1.38234 * 120.00117 * 0.51091 * 7 6 5 9 9 C 1.38239 * 119.99757 * 359.74239 * 8 7 6 10 10 C 1.38225 * 119.99999 * 0.02562 * 9 8 7 11 11 C 1.50696 * 109.47025 * 120.00111 * 2 1 3 12 12 O 1.21293 * 120.00008 * 95.00302 * 11 2 1 13 13 N 1.34778 * 120.00136 * 274.99951 * 11 2 1 14 14 C 1.39938 * 120.00093 * 174.89538 * 13 11 2 15 15 C 1.39286 * 119.94883 * 325.54623 * 14 13 11 16 16 C 1.38491 * 120.43188 * 179.75893 * 15 14 13 17 17 C 1.37690 * 120.31615 * 0.52129 * 16 15 14 18 18 C 1.40739 * 119.88633 * 359.73615 * 17 16 15 19 19 C 1.41408 * 120.20740 * 180.02562 * 18 17 16 20 20 H 1.07995 * 120.00060 * 25.13230 * 19 18 17 21 21 C 1.39939 * 119.99425 * 205.13207 * 19 18 17 22 22 N 1.30819 * 120.00347 * 16.78649 * 21 19 18 23 23 Si 1.86802 * 119.99408 * 196.78477 * 21 19 18 24 24 H 1.48505 * 109.46866 * 60.00170 * 23 21 19 25 25 H 1.48502 * 109.47004 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47312 * 300.00192 * 23 21 19 27 27 C 1.38240 * 119.94738 * 145.82105 * 14 13 11 28 28 H 1.09003 * 109.47201 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47056 * 299.99944 * 1 2 3 30 30 H 1.08999 * 109.47244 * 59.99837 * 1 2 3 31 31 H 0.96708 * 114.00382 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.46912 * 299.99941 * 4 2 1 33 33 H 1.08998 * 109.47165 * 180.02562 * 4 2 1 34 34 H 1.08006 * 120.00218 * 0.02562 * 6 5 4 35 35 H 1.08005 * 120.00012 * 180.23397 * 7 6 5 36 36 H 1.07996 * 120.00138 * 179.72537 * 8 7 6 37 37 H 1.08006 * 119.99632 * 179.97438 * 9 8 7 38 38 H 1.08005 * 119.99952 * 179.97438 * 10 9 8 39 39 H 0.97002 * 119.99572 * 354.89443 * 13 11 2 40 40 H 1.08003 * 119.78753 * 0.02562 * 15 14 13 41 41 H 1.07998 * 119.84191 * 180.23409 * 16 15 14 42 42 H 1.08002 * 120.05181 * 179.76288 * 17 16 15 43 43 H 0.96995 * 120.00269 * 179.97438 * 22 21 19 44 44 H 1.08002 * 120.15812 * 359.95541 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 6 0.3326 -0.3800 -3.0474 7 6 -0.1305 0.2750 -4.1732 8 6 0.6166 1.2919 -4.7376 9 6 1.8242 1.6576 -4.1729 10 6 2.2850 1.0059 -3.0443 11 6 2.0323 -0.7104 1.2304 12 8 2.3208 -1.8873 1.1759 13 7 2.1610 -0.0381 2.3914 14 6 2.5246 -0.7199 3.5582 15 6 2.0860 -2.0254 3.7660 16 6 2.4439 -2.7112 4.9147 17 6 3.2292 -2.1052 5.8697 18 6 3.6754 -0.7846 5.6759 19 6 4.4827 -0.1559 6.6520 20 1 5.0875 -0.7528 7.3184 21 6 4.4976 1.2397 6.7542 22 7 3.5487 1.9466 6.1966 23 14 5.8728 2.0930 7.6871 24 1 7.1766 1.7654 7.0559 25 1 5.6599 3.5621 7.6482 26 1 5.8756 1.6298 9.0979 27 6 3.3138 -0.0945 4.5053 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 2.9704 1.4236 0.0004 32 1 1.6766 -1.7489 -1.2493 33 1 3.1300 -0.7216 -1.2491 34 1 -0.2492 -1.1773 -2.6088 35 1 -1.0739 -0.0109 -4.6145 36 1 0.2569 1.8006 -5.6197 37 1 2.4081 2.4519 -4.6141 38 1 3.2287 1.2913 -2.6034 39 1 2.0016 0.9184 2.4182 40 1 1.4663 -2.5077 3.0244 41 1 2.1016 -3.7245 5.0643 42 1 3.5026 -2.6427 6.7657 43 1 3.5588 2.9139 6.2677 44 1 3.6513 0.9191 4.3468 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362451357.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:40 Heat of formation + Delta-G solvation = -47.122011 kcal Electronic energy + Delta-G solvation = -26702.333429 eV Core-core repulsion = 22969.767162 eV Total energy + Delta-G solvation = -3732.566267 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.50906 -39.25907 -37.63032 -36.62930 -34.39067 -33.36536 -33.07936 -31.12510 -30.51504 -29.56298 -28.37310 -27.02174 -25.27948 -23.84482 -22.65458 -21.62385 -21.20184 -20.41485 -19.58799 -18.11500 -17.44417 -16.78036 -16.07973 -15.76641 -15.40874 -15.17694 -15.13714 -14.88414 -14.60418 -14.38158 -13.71130 -13.53361 -13.20914 -13.02095 -12.84788 -12.68463 -12.52536 -12.37994 -12.17219 -12.01745 -11.75265 -11.65635 -11.27190 -11.16675 -11.13480 -11.08655 -10.84693 -10.71978 -10.58888 -10.02405 -9.75610 -9.41881 -9.17394 -9.03630 -8.95306 -8.72110 -7.40848 -7.04423 -6.71614 -4.39323 1.20662 1.27414 2.46187 2.83695 3.04848 3.08013 3.16236 3.29425 3.43905 3.72252 3.91616 4.05254 4.56062 4.62284 4.67507 4.80969 4.85126 4.92550 4.97693 5.07244 5.33306 5.37783 5.58052 5.64974 5.66496 5.68344 5.76434 5.91288 5.96063 6.05643 6.24653 6.31979 6.36835 6.50824 6.59934 6.67086 6.85243 6.87077 7.02475 7.03726 7.22317 7.36074 7.58323 7.67565 7.90011 8.00300 8.11787 8.30352 8.51805 8.70266 8.86611 8.93210 10.17151 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.019386 B = 0.002775 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.972091 B =10087.874659 C =11094.826864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.129 3.871 3 O -0.545 6.545 4 C -0.096 4.096 5 C -0.068 4.068 6 C -0.116 4.116 7 C -0.122 4.122 8 C -0.127 4.127 9 C -0.120 4.120 10 C -0.104 4.104 11 C 0.481 3.519 12 O -0.522 6.522 13 N -0.653 5.653 14 C 0.142 3.858 15 C -0.227 4.227 16 C -0.086 4.086 17 C -0.228 4.228 18 C 0.120 3.880 19 C -0.464 4.464 20 H 0.078 0.922 21 C 0.077 3.923 22 N -0.798 5.798 23 Si 0.908 3.092 24 H -0.264 1.264 25 H -0.279 1.279 26 H -0.265 1.265 27 C -0.181 4.181 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.380 0.620 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.122 0.878 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.408 0.592 40 H 0.100 0.900 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.280 0.720 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.926 2.253 -17.474 18.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.085 3.915 3 O -0.351 6.351 4 C -0.134 4.134 5 C -0.068 4.068 6 C -0.134 4.134 7 C -0.140 4.140 8 C -0.145 4.145 9 C -0.138 4.138 10 C -0.122 4.122 11 C 0.266 3.734 12 O -0.398 6.398 13 N -0.297 5.297 14 C 0.051 3.949 15 C -0.248 4.248 16 C -0.105 4.105 17 C -0.248 4.248 18 C 0.117 3.883 19 C -0.493 4.493 20 H 0.096 0.904 21 C -0.140 4.140 22 N -0.424 5.424 23 Si 0.732 3.268 24 H -0.189 1.189 25 H -0.204 1.204 26 H -0.190 1.190 27 C -0.202 4.202 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.228 0.772 32 H 0.113 0.887 33 H 0.098 0.902 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.243 0.757 40 H 0.118 0.882 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.091 0.909 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.473 1.801 -17.556 18.478 hybrid contribution 1.065 0.869 0.507 1.465 sum -4.408 2.670 -17.050 17.811 Atomic orbital electron populations 1.21815 0.90627 1.03176 1.04020 1.21350 0.96673 0.82305 0.91150 1.86586 1.27099 1.24604 1.96812 1.21097 1.01631 1.00051 0.90589 1.19678 0.94892 0.96383 0.95842 1.21091 0.95862 1.00211 0.96194 1.21110 0.99815 0.96656 0.96394 1.21115 0.95290 0.97927 1.00167 1.21122 0.96477 0.99846 0.96381 1.21011 0.99854 0.95588 0.95750 1.21276 0.78811 0.88095 0.85243 1.90719 1.48268 1.15872 1.84961 1.43497 1.66746 1.12171 1.07280 1.17639 0.98491 0.92962 0.85833 1.20274 1.09541 0.95147 0.99873 1.20423 0.98468 0.97507 0.94111 1.21045 1.06209 0.97762 0.99750 1.17367 0.89449 0.90631 0.90863 1.19506 1.23250 0.91180 1.15402 0.90384 1.25878 0.95477 0.97893 0.94796 1.69795 1.28280 1.07944 1.36367 0.86377 0.81893 0.77980 0.80519 1.18888 1.20377 1.19013 1.21078 1.03013 1.01665 0.94442 0.90565 0.91210 0.90327 0.77239 0.88681 0.90212 0.86048 0.86250 0.86415 0.86265 0.86242 0.75679 0.88225 0.89027 0.88839 0.90919 0.85941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.25 37.16 0.31 -1.36 16 2 C 0.13 1.67 1.01 -91.77 -0.09 1.57 16 3 O -0.55 -6.47 11.51 -35.23 -0.41 -6.88 16 4 C -0.10 -1.12 4.15 -27.88 -0.12 -1.24 16 5 C -0.07 -0.73 4.33 -104.63 -0.45 -1.18 16 6 C -0.12 -1.15 7.90 -39.58 -0.31 -1.46 16 7 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 8 C -0.13 -1.12 10.05 -39.58 -0.40 -1.52 16 9 C -0.12 -1.11 10.05 -39.59 -0.40 -1.51 16 10 C -0.10 -1.05 9.27 -39.59 -0.37 -1.42 16 11 C 0.48 8.32 6.42 -10.99 -0.07 8.25 16 12 O -0.52 -10.78 13.84 5.55 0.08 -10.71 16 13 N -0.65 -12.30 5.27 -9.91 -0.05 -12.36 16 14 C 0.14 3.32 6.25 -83.77 -0.52 2.80 16 15 C -0.23 -5.40 8.66 -39.10 -0.34 -5.74 16 16 C -0.09 -2.02 10.02 -39.69 -0.40 -2.42 16 17 C -0.23 -5.66 9.79 -38.84 -0.38 -6.04 16 18 C 0.12 3.18 5.57 -106.85 -0.59 2.59 16 19 C -0.46 -12.16 9.06 -37.74 -0.34 -12.50 16 20 H 0.08 1.97 7.90 -52.49 -0.41 1.56 16 21 C 0.08 1.89 5.16 -17.35 -0.09 1.80 16 22 N -0.80 -19.99 10.94 55.55 0.61 -19.39 16 23 Si 0.91 18.40 29.59 -169.99 -5.03 13.37 16 24 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 25 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 26 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 27 C -0.18 -4.58 8.60 -38.69 -0.33 -4.91 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.08 0.87 6.19 -51.93 -0.32 0.54 16 31 H 0.38 3.56 9.04 45.56 0.41 3.98 16 32 H 0.09 1.17 7.81 -51.93 -0.41 0.77 16 33 H 0.08 0.92 8.09 -51.93 -0.42 0.50 16 34 H 0.12 1.07 8.04 -52.48 -0.42 0.65 16 35 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 36 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 37 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 38 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 39 H 0.41 6.90 8.18 -40.82 -0.33 6.56 16 40 H 0.10 2.32 6.48 -52.48 -0.34 1.98 16 41 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 42 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 43 H 0.28 6.40 8.30 -40.82 -0.34 6.07 16 44 H 0.12 3.14 6.17 -52.49 -0.32 2.82 16 LS Contribution 367.85 15.07 5.54 5.54 Total: -1.00 -30.13 367.85 -9.64 -39.78 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: -5.09 Total: 16.42 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: -5.30 Total: -25.78 kcal Atomic # 7 Polarization: -32.30 SS G_CDS: 0.56 Total: -31.74 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.33 Total: -17.58 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.03 Total: 13.37 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.13 -9.64 -39.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362451357.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.345 kcal (2) G-P(sol) polarization free energy of solvation -30.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds