Wall clock time and date at job start Tue Mar 31 2020 14:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42894 * 109.47211 * 2 1 4 4 C 1.53004 * 109.47079 * 240.00329 * 2 1 3 5 5 C 1.50696 * 109.47371 * 59.99993 * 4 2 1 6 6 C 1.38234 * 119.99794 * 269.72540 * 5 4 2 7 7 C 1.38234 * 119.99726 * 179.76522 * 6 5 4 8 8 C 1.38234 * 120.00117 * 0.51091 * 7 6 5 9 9 C 1.38239 * 119.99757 * 359.74239 * 8 7 6 10 10 C 1.38225 * 119.99999 * 0.02562 * 9 8 7 11 11 C 1.50696 * 109.47025 * 120.00111 * 2 1 3 12 12 O 1.21293 * 120.00008 * 95.00302 * 11 2 1 13 13 N 1.34778 * 120.00136 * 274.99951 * 11 2 1 14 14 C 1.39938 * 120.00093 * 174.89538 * 13 11 2 15 15 C 1.39286 * 119.94883 * 325.54623 * 14 13 11 16 16 C 1.38491 * 120.43188 * 179.75893 * 15 14 13 17 17 C 1.37690 * 120.31615 * 0.52129 * 16 15 14 18 18 C 1.40739 * 119.88633 * 359.73615 * 17 16 15 19 19 C 1.41408 * 120.20740 * 180.02562 * 18 17 16 20 20 H 1.07995 * 120.00060 * 25.13230 * 19 18 17 21 21 C 1.39939 * 119.99425 * 205.13207 * 19 18 17 22 22 N 1.30819 * 120.00347 * 16.78649 * 21 19 18 23 23 Si 1.86802 * 119.99408 * 196.78477 * 21 19 18 24 24 H 1.48505 * 109.46866 * 60.00170 * 23 21 19 25 25 H 1.48502 * 109.47004 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47312 * 300.00192 * 23 21 19 27 27 C 1.38240 * 119.94738 * 145.82105 * 14 13 11 28 28 H 1.09003 * 109.47201 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47056 * 299.99944 * 1 2 3 30 30 H 1.08999 * 109.47244 * 59.99837 * 1 2 3 31 31 H 0.96708 * 114.00382 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.46912 * 299.99941 * 4 2 1 33 33 H 1.08998 * 109.47165 * 180.02562 * 4 2 1 34 34 H 1.08006 * 120.00218 * 0.02562 * 6 5 4 35 35 H 1.08005 * 120.00012 * 180.23397 * 7 6 5 36 36 H 1.07996 * 120.00138 * 179.72537 * 8 7 6 37 37 H 1.08006 * 119.99632 * 179.97438 * 9 8 7 38 38 H 1.08005 * 119.99952 * 179.97438 * 10 9 8 39 39 H 0.97002 * 119.99572 * 354.89443 * 13 11 2 40 40 H 1.08003 * 119.78753 * 0.02562 * 15 14 13 41 41 H 1.07998 * 119.84191 * 180.23409 * 16 15 14 42 42 H 1.08002 * 120.05181 * 179.76288 * 17 16 15 43 43 H 0.96995 * 120.00269 * 179.97438 * 22 21 19 44 44 H 1.08002 * 120.15812 * 359.95541 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 6 0.3326 -0.3800 -3.0474 7 6 -0.1305 0.2750 -4.1732 8 6 0.6166 1.2919 -4.7376 9 6 1.8242 1.6576 -4.1729 10 6 2.2850 1.0059 -3.0443 11 6 2.0323 -0.7104 1.2304 12 8 2.3208 -1.8873 1.1759 13 7 2.1610 -0.0381 2.3914 14 6 2.5246 -0.7199 3.5582 15 6 2.0860 -2.0254 3.7660 16 6 2.4439 -2.7112 4.9147 17 6 3.2292 -2.1052 5.8697 18 6 3.6754 -0.7846 5.6759 19 6 4.4827 -0.1559 6.6520 20 1 5.0875 -0.7528 7.3184 21 6 4.4976 1.2397 6.7542 22 7 3.5487 1.9466 6.1966 23 14 5.8728 2.0930 7.6871 24 1 7.1766 1.7654 7.0559 25 1 5.6599 3.5621 7.6482 26 1 5.8756 1.6298 9.0979 27 6 3.3138 -0.0945 4.5053 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 2.9704 1.4236 0.0004 32 1 1.6766 -1.7489 -1.2493 33 1 3.1300 -0.7216 -1.2491 34 1 -0.2492 -1.1773 -2.6088 35 1 -1.0739 -0.0109 -4.6145 36 1 0.2569 1.8006 -5.6197 37 1 2.4081 2.4519 -4.6141 38 1 3.2287 1.2913 -2.6034 39 1 2.0016 0.9184 2.4182 40 1 1.4663 -2.5077 3.0244 41 1 2.1016 -3.7245 5.0643 42 1 3.5026 -2.6427 6.7657 43 1 3.5588 2.9139 6.2677 44 1 3.6513 0.9191 4.3468 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362451357.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:39 Heat of formation + Delta-G solvation = -64.367305 kcal Electronic energy + Delta-G solvation = -26703.081242 eV Core-core repulsion = 22969.767162 eV Total energy + Delta-G solvation = -3733.314079 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.79774 -40.24946 -39.17920 -37.90783 -36.07802 -35.09662 -34.07723 -31.87288 -31.54753 -31.36237 -30.08212 -27.91137 -27.19635 -25.10173 -23.36099 -23.14525 -22.67630 -21.69637 -21.00507 -19.42034 -19.22559 -17.79844 -17.39365 -16.93723 -16.75034 -16.64534 -16.41377 -16.02450 -15.92861 -15.69410 -15.10395 -14.70005 -14.58007 -14.24381 -14.17513 -13.85986 -13.64387 -13.50216 -13.46598 -13.18360 -13.08307 -12.96894 -12.83679 -12.73305 -12.59243 -12.30039 -11.94671 -11.87019 -11.78505 -11.71024 -11.59326 -11.16541 -10.91671 -10.44875 -9.73443 -9.53601 -9.35069 -8.88152 -8.56177 -6.36621 0.47662 0.57484 0.75612 1.02745 1.39956 1.48181 1.51712 1.67167 2.09514 2.21839 2.74286 2.93484 3.06849 3.44621 3.70032 3.78195 3.85017 4.00306 4.11269 4.22766 4.35660 4.44254 4.49701 4.67892 4.69203 4.70260 4.74902 4.83349 4.85045 4.89258 5.07445 5.10167 5.13777 5.18676 5.20514 5.23666 5.34140 5.63153 5.68880 5.75619 5.76267 5.82565 6.00444 6.07206 6.18070 6.27933 6.42636 6.60220 6.72249 6.92689 6.95806 7.18608 8.33416 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.019386 B = 0.002775 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.972091 B =10087.874659 C =11094.826864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.146 3.854 3 O -0.544 6.544 4 C -0.088 4.088 5 C -0.081 4.081 6 C -0.126 4.126 7 C -0.127 4.127 8 C -0.130 4.130 9 C -0.129 4.129 10 C -0.116 4.116 11 C 0.482 3.518 12 O -0.555 6.555 13 N -0.651 5.651 14 C 0.148 3.852 15 C -0.240 4.240 16 C -0.085 4.085 17 C -0.248 4.248 18 C 0.091 3.909 19 C -0.498 4.498 20 H 0.076 0.924 21 C 0.038 3.962 22 N -0.821 5.821 23 Si 0.981 3.019 24 H -0.263 1.263 25 H -0.266 1.266 26 H -0.261 1.261 27 C -0.202 4.202 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.391 0.609 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.129 0.871 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.127 0.873 39 H 0.417 0.583 40 H 0.103 0.897 41 H 0.120 0.880 42 H 0.101 0.899 43 H 0.289 0.711 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.179 3.414 -18.828 19.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.102 3.898 3 O -0.352 6.352 4 C -0.126 4.126 5 C -0.081 4.081 6 C -0.144 4.144 7 C -0.145 4.145 8 C -0.148 4.148 9 C -0.146 4.146 10 C -0.134 4.134 11 C 0.270 3.730 12 O -0.432 6.432 13 N -0.296 5.296 14 C 0.055 3.945 15 C -0.261 4.261 16 C -0.103 4.103 17 C -0.268 4.268 18 C 0.088 3.912 19 C -0.527 4.527 20 H 0.095 0.905 21 C -0.177 4.177 22 N -0.447 5.447 23 Si 0.802 3.198 24 H -0.187 1.187 25 H -0.190 1.190 26 H -0.185 1.185 27 C -0.223 4.223 28 H 0.099 0.901 29 H 0.082 0.918 30 H 0.110 0.890 31 H 0.241 0.759 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.146 0.854 35 H 0.158 0.842 36 H 0.158 0.842 37 H 0.155 0.845 38 H 0.144 0.856 39 H 0.254 0.746 40 H 0.121 0.879 41 H 0.138 0.862 42 H 0.120 0.880 43 H 0.100 0.900 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.741 2.976 -18.936 20.010 hybrid contribution 1.089 0.496 0.836 1.460 sum -4.652 3.472 -18.100 19.008 Atomic orbital electron populations 1.21842 0.89628 1.03651 1.04378 1.21199 0.97170 0.82343 0.89092 1.86581 1.28324 1.23688 1.96580 1.20992 1.01462 0.99576 0.90577 1.19609 0.95664 0.97080 0.95758 1.21270 0.95760 1.00630 0.96717 1.21407 1.00650 0.96445 0.96017 1.21463 0.95001 0.97688 1.00663 1.21409 0.96940 1.00185 0.96116 1.21198 1.00254 0.95652 0.96296 1.22168 0.77332 0.87788 0.85758 1.90697 1.49431 1.17565 1.85537 1.43502 1.66795 1.12602 1.06683 1.17713 0.97087 0.92982 0.86716 1.20464 1.09949 0.95524 1.00189 1.20744 0.97443 0.98714 0.93439 1.21221 1.07178 0.97691 1.00723 1.17782 0.90092 0.91693 0.91611 1.19767 1.24284 0.92506 1.16173 0.90538 1.26702 0.97536 0.97909 0.95558 1.69835 1.29390 1.08671 1.36762 0.85271 0.78301 0.77212 0.79042 1.18712 1.19016 1.18516 1.21029 1.04622 1.01538 0.95142 0.90125 0.91770 0.88960 0.75929 0.89509 0.90440 0.85357 0.84243 0.84242 0.84515 0.85554 0.74616 0.87859 0.86194 0.88034 0.90025 0.86831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.25 71.98 0.59 -2.53 16 2 C 0.15 3.64 1.01 -11.54 -0.01 3.63 16 3 O -0.54 -12.23 11.51 -148.98 -1.71 -13.95 16 4 C -0.09 -2.00 4.15 29.85 0.12 -1.88 16 5 C -0.08 -1.63 4.33 -19.87 -0.09 -1.72 16 6 C -0.13 -2.29 7.90 22.27 0.18 -2.11 16 7 C -0.13 -2.00 10.05 22.27 0.22 -1.78 16 8 C -0.13 -1.97 10.05 22.27 0.22 -1.74 16 9 C -0.13 -2.09 10.05 22.27 0.22 -1.87 16 10 C -0.12 -2.16 9.27 22.27 0.21 -1.95 16 11 C 0.48 16.61 6.42 87.66 0.56 17.17 16 12 O -0.55 -22.99 13.84 -3.07 -0.04 -23.04 16 13 N -0.65 -24.65 5.27 -303.65 -1.60 -26.25 16 14 C 0.15 7.02 6.25 38.10 0.24 7.26 16 15 C -0.24 -11.49 8.66 22.58 0.20 -11.30 16 16 C -0.08 -3.98 10.02 22.20 0.22 -3.76 16 17 C -0.25 -12.59 9.79 22.75 0.22 -12.37 16 18 C 0.09 4.98 5.57 -21.31 -0.12 4.86 16 19 C -0.50 -26.73 9.06 23.46 0.21 -26.52 16 20 H 0.08 3.97 7.90 -2.91 -0.02 3.94 16 21 C 0.04 1.89 5.16 85.26 0.44 2.33 16 22 N -0.82 -41.44 10.94 21.82 0.24 -41.21 16 23 Si 0.98 37.46 29.59 68.60 2.03 39.49 16 24 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 25 H -0.27 -9.52 7.11 99.48 0.71 -8.81 16 26 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 27 C -0.20 -10.52 8.60 22.85 0.20 -10.32 16 28 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.09 1.87 6.19 -2.39 -0.01 1.85 16 31 H 0.39 6.88 9.04 -74.05 -0.67 6.21 16 32 H 0.09 2.11 7.81 -2.39 -0.02 2.09 16 33 H 0.08 1.76 8.09 -2.39 -0.02 1.74 16 34 H 0.13 2.06 8.04 -2.91 -0.02 2.04 16 35 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 36 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 37 H 0.14 1.66 8.06 -2.91 -0.02 1.63 16 38 H 0.13 2.06 8.06 -2.91 -0.02 2.03 16 39 H 0.42 14.10 8.18 -92.71 -0.76 13.34 16 40 H 0.10 4.83 6.48 -2.91 -0.02 4.81 16 41 H 0.12 4.82 8.06 -2.91 -0.02 4.80 16 42 H 0.10 4.82 8.06 -2.91 -0.02 4.80 16 43 H 0.29 13.15 8.30 -92.71 -0.77 12.38 16 44 H 0.11 6.01 6.17 -2.91 -0.02 5.99 16 Total: -1.00 -65.08 367.85 2.36 -62.72 By element: Atomic # 1 Polarization: 47.22 SS G_CDS: -0.39 Total: 46.83 kcal Atomic # 6 Polarization: -48.44 SS G_CDS: 3.84 Total: -44.60 kcal Atomic # 7 Polarization: -66.09 SS G_CDS: -1.36 Total: -67.46 kcal Atomic # 8 Polarization: -35.23 SS G_CDS: -1.76 Total: -36.98 kcal Atomic # 14 Polarization: 37.46 SS G_CDS: 2.03 Total: 39.49 kcal Total: -65.08 2.36 -62.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362451357.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.649 kcal (2) G-P(sol) polarization free energy of solvation -65.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds