Wall clock time and date at job start Tue Mar 31 2020 13:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35899 * 116.99719 * 2 1 4 4 C 1.38757 * 120.05449 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.94144 * 180.02562 * 4 3 2 6 6 C 1.50705 * 119.97053 * 179.97438 * 5 4 3 7 7 C 1.38283 * 120.05716 * 359.97258 * 5 4 3 8 8 C 1.38245 * 120.11482 * 0.02562 * 7 5 4 9 9 C 1.50693 * 119.97487 * 179.97438 * 8 7 5 10 10 N 1.46504 * 109.47206 * 90.00082 * 9 8 7 11 11 C 1.34775 * 120.00020 * 179.97438 * 10 9 8 12 12 O 1.21617 * 120.00035 * 0.02562 * 11 10 9 13 13 C 1.47433 * 120.00159 * 179.97438 * 11 10 9 14 14 C 1.39222 * 120.27950 * 355.67294 * 13 11 10 15 15 C 1.38228 * 120.09079 * 180.27937 * 14 13 11 16 16 C 1.38824 * 120.67423 * 359.71805 * 15 14 13 17 17 C 1.37597 * 120.57318 * 0.02562 * 16 15 14 18 18 C 1.40711 * 119.87929 * 359.97438 * 17 16 15 19 19 C 1.40891 * 120.32596 * 180.02562 * 18 17 16 20 20 H 1.08004 * 119.99615 * 216.32947 * 19 18 17 21 21 C 1.40267 * 120.00197 * 36.33258 * 19 18 17 22 22 N 1.30625 * 120.00058 * 190.50733 * 21 19 18 23 23 Si 1.86802 * 120.00015 * 10.50211 * 21 19 18 24 24 H 1.48509 * 109.46965 * 267.22708 * 23 21 19 25 25 H 1.48499 * 109.47061 * 27.22336 * 23 21 19 26 26 H 1.48502 * 109.47123 * 147.22806 * 23 21 19 27 27 C 1.38170 * 120.05385 * 0.27275 * 8 7 5 28 28 H 1.08994 * 109.47630 * 299.99606 * 1 2 3 29 29 H 1.09003 * 109.47280 * 60.00311 * 1 2 3 30 30 H 1.09002 * 109.46810 * 180.02562 * 1 2 3 31 31 H 1.07995 * 120.02881 * 0.04264 * 4 3 2 32 32 H 1.09002 * 109.46955 * 269.97310 * 6 5 4 33 33 H 1.08996 * 109.47040 * 29.97560 * 6 5 4 34 34 H 1.09001 * 109.46856 * 149.97799 * 6 5 4 35 35 H 1.08003 * 119.94840 * 180.02562 * 7 5 4 36 36 H 1.08992 * 109.47584 * 329.99858 * 9 8 7 37 37 H 1.09004 * 109.47483 * 209.99607 * 9 8 7 38 38 H 0.97001 * 119.99703 * 359.97438 * 10 9 8 39 39 H 1.08001 * 119.95839 * 359.97438 * 14 13 11 40 40 H 1.08003 * 119.66408 * 179.73476 * 15 14 13 41 41 H 1.08000 * 119.71145 * 180.02562 * 16 15 14 42 42 H 1.07996 * 120.06329 * 180.02562 * 17 16 15 43 43 H 0.97003 * 120.00012 * 180.02562 * 22 21 19 44 44 H 1.08000 * 120.03147 * 179.74677 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2912 2.3753 0.0005 5 6 1.9207 3.6048 0.0000 6 6 1.1017 4.8698 0.0000 7 6 3.3017 3.6759 -0.0005 8 6 4.0559 2.5173 -0.0010 9 6 5.5606 2.5984 -0.0021 10 7 6.0493 2.6248 1.3788 11 6 7.3726 2.6956 1.6240 12 8 8.1611 2.7381 0.6990 13 6 7.8644 2.7227 3.0136 14 6 6.9654 2.7661 4.0758 15 6 7.4308 2.7973 5.3769 16 6 8.7934 2.7798 5.6423 17 6 9.7061 2.7318 4.6138 18 6 9.2584 2.6993 3.2802 19 6 10.1848 2.6495 2.2198 20 1 9.9826 3.1797 1.3008 21 6 11.3696 1.9114 2.3576 22 7 12.3184 2.0270 1.4674 23 14 11.5905 0.7630 3.8144 24 1 12.2757 1.4866 4.9155 25 1 10.2610 0.2949 4.2817 26 1 12.4106 -0.4050 3.4040 27 6 3.4311 1.2849 -0.0067 28 1 -0.3634 0.5137 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2127 2.3203 0.0017 32 1 0.9042 5.1748 -1.0277 33 1 0.1572 4.6912 0.5138 34 1 1.6514 5.6585 0.5138 35 1 3.7920 4.6382 -0.0005 36 1 5.8752 3.5065 -0.5162 37 1 5.9710 1.7292 -0.5162 38 1 5.4204 2.5912 2.1165 39 1 5.9028 2.7805 3.8827 40 1 6.7273 2.8352 6.1955 41 1 9.1399 2.8042 6.6649 42 1 10.7642 2.7181 4.8297 43 1 13.1376 1.5163 1.5625 44 1 4.0206 0.3800 -0.0112 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362517679.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:55 Heat of formation + Delta-G solvation = -31.904813 kcal Electronic energy + Delta-G solvation = -26268.711993 eV Core-core repulsion = 22536.805593 eV Total energy + Delta-G solvation = -3731.906400 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.42995 -39.05517 -37.97402 -36.92372 -34.59752 -33.62172 -32.53449 -30.86097 -30.43543 -29.71631 -28.13526 -26.88165 -26.06170 -25.01477 -22.33319 -21.95338 -21.19552 -20.56608 -19.48876 -17.84481 -17.47298 -16.62299 -16.57086 -16.12890 -15.97796 -15.37067 -15.17098 -14.48516 -14.19262 -14.07192 -13.90055 -13.85247 -13.56227 -13.46752 -13.11624 -12.67414 -12.58250 -12.50753 -12.30158 -12.22879 -12.05916 -11.80334 -11.53528 -11.41912 -11.09815 -10.97622 -10.90975 -10.67860 -10.42252 -10.15418 -9.78833 -9.23779 -8.98726 -8.42514 -8.40754 -8.28811 -7.79702 -7.56912 -6.88141 -4.46454 1.08789 1.29344 2.12593 2.62356 3.04561 3.10227 3.19197 3.30802 3.46649 3.96370 4.03567 4.17417 4.49866 4.57256 4.62339 4.79018 4.85561 4.87655 5.07724 5.16431 5.20036 5.32340 5.36498 5.40176 5.42900 5.52863 5.75417 5.80300 5.86534 5.97835 6.01756 6.09773 6.15005 6.35091 6.41752 6.52755 6.53401 6.61075 6.81526 7.08234 7.12002 7.21558 7.25191 7.41587 7.61075 7.77681 8.03651 8.33940 8.50068 8.66065 8.88816 9.37594 10.08524 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016916 B = 0.002821 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.812647 B = 9923.786015 C =10093.106803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.127 3.873 4 C -0.207 4.207 5 C -0.051 4.051 6 C -0.115 4.115 7 C -0.139 4.139 8 C -0.054 4.054 9 C 0.165 3.835 10 N -0.743 5.743 11 C 0.561 3.439 12 O -0.528 6.528 13 C -0.248 4.248 14 C -0.040 4.040 15 C -0.255 4.255 16 C -0.065 4.065 17 C -0.226 4.226 18 C 0.117 3.883 19 C -0.401 4.401 20 H 0.124 0.876 21 C 0.079 3.921 22 N -0.793 5.793 23 Si 0.906 3.094 24 H -0.268 1.268 25 H -0.242 1.242 26 H -0.289 1.289 27 C -0.138 4.138 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.099 0.901 31 H 0.126 0.874 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.127 0.873 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.393 0.607 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.104 0.896 43 H 0.287 0.713 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.556 -0.066 -1.370 21.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.230 6.230 3 C 0.082 3.918 4 C -0.226 4.226 5 C -0.051 4.051 6 C -0.171 4.171 7 C -0.157 4.157 8 C -0.055 4.055 9 C 0.041 3.959 10 N -0.399 5.399 11 C 0.355 3.645 12 O -0.405 6.405 13 C -0.253 4.253 14 C -0.059 4.059 15 C -0.274 4.274 16 C -0.084 4.084 17 C -0.245 4.245 18 C 0.112 3.888 19 C -0.428 4.428 20 H 0.142 0.858 21 C -0.142 4.142 22 N -0.417 5.417 23 Si 0.732 3.268 24 H -0.194 1.194 25 H -0.165 1.165 26 H -0.216 1.216 27 C -0.158 4.158 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.117 0.883 31 H 0.144 0.856 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.145 0.855 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.227 0.773 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.122 0.878 43 H 0.097 0.903 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -20.616 -0.272 -2.235 20.739 hybrid contribution -0.428 -0.477 0.999 1.187 sum -21.044 -0.749 -1.237 21.094 Atomic orbital electron populations 1.23035 0.78567 1.03854 1.01233 1.86092 1.21226 1.26929 1.88789 1.18958 0.92205 0.84060 0.96620 1.21077 0.99719 0.91862 1.09944 1.19672 0.93826 0.94522 0.97126 1.20808 0.99237 0.94650 1.02445 1.20934 0.92861 0.98344 1.03587 1.19784 0.95570 0.92263 0.97843 1.20024 0.87481 1.02939 0.85448 1.46021 1.07884 1.79292 1.06685 1.18369 0.80539 0.75804 0.89827 1.90733 1.54119 1.49468 1.46180 1.19387 0.93926 1.21457 0.90522 1.20783 0.96640 0.95581 0.92930 1.20285 0.94791 1.17018 0.95323 1.20736 0.93529 0.96917 0.97219 1.21149 0.97973 1.12149 0.93222 1.17554 0.90981 0.88141 0.92112 1.20201 0.97365 1.22969 1.02288 0.85805 1.26379 0.93918 0.96962 0.96895 1.69570 1.04886 1.33768 1.33440 0.86398 0.80313 0.79320 0.80729 1.19437 1.16536 1.21611 1.20378 0.91254 0.98463 1.05667 0.92710 0.92758 0.88309 0.85650 0.90988 0.91653 0.91102 0.85530 0.90898 0.90937 0.77271 0.88720 0.88569 0.88597 0.87785 0.90275 0.84915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.55 10.50 -19.42 -0.20 -3.76 16 3 C 0.13 1.50 6.69 -39.21 -0.26 1.24 16 4 C -0.21 -2.11 8.69 -39.43 -0.34 -2.45 16 5 C -0.05 -0.53 5.88 -104.65 -0.62 -1.14 16 6 C -0.11 -0.85 10.01 36.01 0.36 -0.49 16 7 C -0.14 -1.61 9.35 -39.56 -0.37 -1.98 16 8 C -0.05 -0.70 5.25 -104.65 -0.55 -1.25 16 9 C 0.16 2.54 5.80 -5.20 -0.03 2.51 16 10 N -0.74 -13.11 5.50 -62.56 -0.34 -13.45 16 11 C 0.56 12.84 7.72 -12.52 -0.10 12.74 16 12 O -0.53 -14.05 13.54 5.26 0.07 -13.98 16 13 C -0.25 -5.87 5.92 -104.37 -0.62 -6.49 16 14 C -0.04 -0.82 9.52 -39.22 -0.37 -1.19 16 15 C -0.25 -5.07 10.03 -39.37 -0.39 -5.46 16 16 C -0.07 -1.37 10.01 -39.60 -0.40 -1.77 16 17 C -0.23 -5.38 7.00 -38.88 -0.27 -5.66 16 18 C 0.12 3.03 5.03 -106.54 -0.54 2.50 16 19 C -0.40 -11.34 8.31 -37.82 -0.31 -11.66 16 20 H 0.12 3.86 5.96 -52.48 -0.31 3.55 16 21 C 0.08 2.12 5.47 -17.30 -0.09 2.03 16 22 N -0.79 -21.73 13.92 55.56 0.77 -20.95 16 23 Si 0.91 20.93 24.52 -169.99 -4.17 16.76 16 24 H -0.27 -5.89 6.76 56.52 0.38 -5.51 16 25 H -0.24 -5.74 6.73 56.52 0.38 -5.36 16 26 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 27 C -0.14 -1.78 9.64 -39.43 -0.38 -2.16 16 28 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 29 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 30 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.13 0.98 6.30 -52.49 -0.33 0.65 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 34 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 35 H 0.13 1.37 8.06 -52.48 -0.42 0.94 16 36 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 37 H 0.07 1.17 8.08 -51.93 -0.42 0.75 16 38 H 0.39 6.12 6.51 -40.82 -0.27 5.85 16 39 H 0.09 1.58 6.42 -52.49 -0.34 1.25 16 40 H 0.10 1.63 8.06 -52.48 -0.42 1.21 16 41 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 42 H 0.10 2.44 5.01 -52.49 -0.26 2.18 16 43 H 0.29 7.05 8.29 -40.82 -0.34 6.71 16 44 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 363.37 15.07 5.48 5.48 Total: -1.00 -31.52 363.37 -8.38 -39.91 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -5.70 Total: 9.50 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: -4.29 Total: -19.50 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.43 Total: -34.41 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.13 Total: -17.74 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.17 Total: 16.76 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.52 -8.38 -39.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362517679.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.000 kcal (2) G-P(sol) polarization free energy of solvation -31.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds