Wall clock time and date at job start Tue Mar 31 2020 13:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35899 * 116.99719 * 2 1 4 4 C 1.38757 * 120.05449 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.94144 * 180.02562 * 4 3 2 6 6 C 1.50705 * 119.97053 * 179.97438 * 5 4 3 7 7 C 1.38283 * 120.05716 * 359.97258 * 5 4 3 8 8 C 1.38245 * 120.11482 * 0.02562 * 7 5 4 9 9 C 1.50693 * 119.97487 * 179.97438 * 8 7 5 10 10 N 1.46504 * 109.47206 * 90.00082 * 9 8 7 11 11 C 1.34775 * 120.00020 * 179.97438 * 10 9 8 12 12 O 1.21617 * 120.00035 * 0.02562 * 11 10 9 13 13 C 1.47433 * 120.00159 * 179.97438 * 11 10 9 14 14 C 1.39222 * 120.27950 * 355.67294 * 13 11 10 15 15 C 1.38228 * 120.09079 * 180.27937 * 14 13 11 16 16 C 1.38824 * 120.67423 * 359.71805 * 15 14 13 17 17 C 1.37597 * 120.57318 * 0.02562 * 16 15 14 18 18 C 1.40711 * 119.87929 * 359.97438 * 17 16 15 19 19 C 1.40891 * 120.32596 * 180.02562 * 18 17 16 20 20 H 1.08004 * 119.99615 * 216.32947 * 19 18 17 21 21 C 1.40267 * 120.00197 * 36.33258 * 19 18 17 22 22 N 1.30625 * 120.00058 * 190.50733 * 21 19 18 23 23 Si 1.86802 * 120.00015 * 10.50211 * 21 19 18 24 24 H 1.48509 * 109.46965 * 267.22708 * 23 21 19 25 25 H 1.48499 * 109.47061 * 27.22336 * 23 21 19 26 26 H 1.48502 * 109.47123 * 147.22806 * 23 21 19 27 27 C 1.38170 * 120.05385 * 0.27275 * 8 7 5 28 28 H 1.08994 * 109.47630 * 299.99606 * 1 2 3 29 29 H 1.09003 * 109.47280 * 60.00311 * 1 2 3 30 30 H 1.09002 * 109.46810 * 180.02562 * 1 2 3 31 31 H 1.07995 * 120.02881 * 0.04264 * 4 3 2 32 32 H 1.09002 * 109.46955 * 269.97310 * 6 5 4 33 33 H 1.08996 * 109.47040 * 29.97560 * 6 5 4 34 34 H 1.09001 * 109.46856 * 149.97799 * 6 5 4 35 35 H 1.08003 * 119.94840 * 180.02562 * 7 5 4 36 36 H 1.08992 * 109.47584 * 329.99858 * 9 8 7 37 37 H 1.09004 * 109.47483 * 209.99607 * 9 8 7 38 38 H 0.97001 * 119.99703 * 359.97438 * 10 9 8 39 39 H 1.08001 * 119.95839 * 359.97438 * 14 13 11 40 40 H 1.08003 * 119.66408 * 179.73476 * 15 14 13 41 41 H 1.08000 * 119.71145 * 180.02562 * 16 15 14 42 42 H 1.07996 * 120.06329 * 180.02562 * 17 16 15 43 43 H 0.97003 * 120.00012 * 180.02562 * 22 21 19 44 44 H 1.08000 * 120.03147 * 179.74677 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2912 2.3753 0.0005 5 6 1.9207 3.6048 0.0000 6 6 1.1017 4.8698 0.0000 7 6 3.3017 3.6759 -0.0005 8 6 4.0559 2.5173 -0.0010 9 6 5.5606 2.5984 -0.0021 10 7 6.0493 2.6248 1.3788 11 6 7.3726 2.6956 1.6240 12 8 8.1611 2.7381 0.6990 13 6 7.8644 2.7227 3.0136 14 6 6.9654 2.7661 4.0758 15 6 7.4308 2.7973 5.3769 16 6 8.7934 2.7798 5.6423 17 6 9.7061 2.7318 4.6138 18 6 9.2584 2.6993 3.2802 19 6 10.1848 2.6495 2.2198 20 1 9.9826 3.1797 1.3008 21 6 11.3696 1.9114 2.3576 22 7 12.3184 2.0270 1.4674 23 14 11.5905 0.7630 3.8144 24 1 12.2757 1.4866 4.9155 25 1 10.2610 0.2949 4.2817 26 1 12.4106 -0.4050 3.4040 27 6 3.4311 1.2849 -0.0067 28 1 -0.3634 0.5137 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2127 2.3203 0.0017 32 1 0.9042 5.1748 -1.0277 33 1 0.1572 4.6912 0.5138 34 1 1.6514 5.6585 0.5138 35 1 3.7920 4.6382 -0.0005 36 1 5.8752 3.5065 -0.5162 37 1 5.9710 1.7292 -0.5162 38 1 5.4204 2.5912 2.1165 39 1 5.9028 2.7805 3.8827 40 1 6.7273 2.8352 6.1955 41 1 9.1399 2.8042 6.6649 42 1 10.7642 2.7181 4.8297 43 1 13.1376 1.5163 1.5625 44 1 4.0206 0.3800 -0.0112 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362517679.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:54 Heat of formation + Delta-G solvation = -52.010161 kcal Electronic energy + Delta-G solvation = -26269.583826 eV Core-core repulsion = 22536.805593 eV Total energy + Delta-G solvation = -3732.778233 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.34073 -40.72525 -39.04546 -38.51126 -36.06918 -35.42870 -33.65802 -32.29615 -32.13482 -31.08330 -28.73833 -27.88585 -27.31620 -26.61118 -24.02572 -22.91173 -22.73054 -21.73633 -21.16848 -19.48010 -18.72883 -18.10871 -17.44625 -17.19706 -17.00447 -16.82848 -16.60816 -15.87024 -15.82105 -15.80265 -15.34796 -14.89418 -14.56358 -14.49061 -14.42307 -14.10961 -13.98760 -13.91999 -13.59451 -13.22823 -13.09127 -12.99406 -12.77595 -12.68715 -12.51863 -12.36302 -12.20387 -12.05044 -11.82147 -11.78856 -11.61310 -11.08300 -10.40873 -10.03946 -9.74887 -9.52104 -9.41001 -9.17358 -8.81961 -6.48204 0.16785 0.34076 0.41098 0.83853 1.23748 1.37435 1.46656 2.10265 2.25093 2.29824 2.39551 2.71603 2.86452 3.53535 3.58320 3.74885 4.05766 4.14634 4.23450 4.25873 4.29765 4.32984 4.40489 4.40851 4.44487 4.55662 4.65788 4.73372 4.75552 4.82959 4.84934 4.86194 4.91825 5.01541 5.22191 5.26560 5.30178 5.46335 5.50133 5.54817 5.60832 5.68823 5.76190 5.87074 5.96559 6.27387 6.43778 6.47843 6.66378 6.78963 6.90331 7.61340 8.22235 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016916 B = 0.002821 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.812647 B = 9923.786015 C =10093.106803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.338 6.338 3 C 0.121 3.879 4 C -0.200 4.200 5 C -0.048 4.048 6 C -0.114 4.114 7 C -0.146 4.146 8 C -0.060 4.060 9 C 0.168 3.832 10 N -0.721 5.721 11 C 0.555 3.445 12 O -0.576 6.576 13 C -0.265 4.265 14 C -0.039 4.039 15 C -0.230 4.230 16 C -0.061 4.061 17 C -0.246 4.246 18 C 0.100 3.900 19 C -0.450 4.450 20 H 0.073 0.927 21 C 0.036 3.964 22 N -0.849 5.849 23 Si 0.967 3.033 24 H -0.246 1.246 25 H -0.250 1.250 26 H -0.280 1.280 27 C -0.158 4.158 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.116 0.884 31 H 0.155 0.845 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.132 0.868 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.406 0.594 39 H 0.136 0.864 40 H 0.144 0.856 41 H 0.137 0.863 42 H 0.103 0.897 43 H 0.293 0.707 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.032 -0.038 1.982 26.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.252 6.252 3 C 0.076 3.924 4 C -0.219 4.219 5 C -0.048 4.048 6 C -0.170 4.170 7 C -0.165 4.165 8 C -0.060 4.060 9 C 0.044 3.956 10 N -0.375 5.375 11 C 0.348 3.652 12 O -0.457 6.457 13 C -0.270 4.270 14 C -0.058 4.058 15 C -0.249 4.249 16 C -0.079 4.079 17 C -0.265 4.265 18 C 0.096 3.904 19 C -0.479 4.479 20 H 0.091 0.909 21 C -0.178 4.178 22 N -0.475 5.475 23 Si 0.789 3.211 24 H -0.171 1.171 25 H -0.174 1.174 26 H -0.207 1.207 27 C -0.177 4.177 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.134 0.866 31 H 0.172 0.828 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.149 0.851 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.243 0.757 39 H 0.153 0.847 40 H 0.162 0.838 41 H 0.155 0.845 42 H 0.120 0.880 43 H 0.104 0.896 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -25.155 -0.234 1.136 25.182 hybrid contribution 0.527 -0.419 0.042 0.675 sum -24.628 -0.653 1.177 24.665 Atomic orbital electron populations 1.23361 0.76247 1.05563 1.02450 1.86070 1.23681 1.26795 1.88659 1.19029 0.91875 0.85063 0.96409 1.21398 1.01122 0.91031 1.08303 1.20012 0.93350 0.95917 0.95518 1.20880 0.99511 0.93119 1.03510 1.21056 0.93783 0.97873 1.03780 1.19439 0.93517 0.93151 0.99924 1.20015 0.89700 1.01984 0.83869 1.45781 1.06298 1.77163 1.08272 1.18556 0.81793 0.75431 0.89469 1.90734 1.55864 1.51659 1.47481 1.19772 0.94038 1.21178 0.92001 1.21204 0.98197 0.94123 0.92279 1.20937 0.95225 1.12490 0.96266 1.21252 0.93686 0.94564 0.98414 1.21257 0.98864 1.13447 0.92958 1.17818 0.91765 0.88063 0.92749 1.19957 0.99907 1.26279 1.01712 0.90913 1.27113 0.93251 0.97944 0.99521 1.69625 1.05934 1.36164 1.35815 0.85494 0.79873 0.77650 0.78084 1.17104 1.17364 1.20703 1.20349 0.92281 0.97948 1.07104 0.91422 0.91450 0.86593 0.82766 0.89838 0.89856 0.90740 0.85056 0.91466 0.92422 0.75675 0.84658 0.83816 0.84473 0.87950 0.89633 0.86082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.34 -7.01 10.50 -92.41 -0.97 -7.98 16 3 C 0.12 2.69 6.69 22.51 0.15 2.84 16 4 C -0.20 -3.46 8.69 22.37 0.19 -3.26 16 5 C -0.05 -0.84 5.88 -19.88 -0.12 -0.96 16 6 C -0.11 -1.27 10.01 71.24 0.71 -0.55 16 7 C -0.15 -3.19 9.35 22.28 0.21 -2.98 16 8 C -0.06 -1.54 5.25 -19.88 -0.10 -1.65 16 9 C 0.17 5.41 5.80 85.63 0.50 5.90 16 10 N -0.72 -25.71 5.50 -470.10 -2.58 -28.29 16 11 C 0.55 26.45 7.72 86.67 0.67 27.12 16 12 O -0.58 -33.34 13.54 -4.08 -0.06 -33.40 16 13 C -0.27 -12.57 5.92 -19.70 -0.12 -12.69 16 14 C -0.04 -1.46 9.52 22.50 0.21 -1.24 16 15 C -0.23 -7.85 10.03 22.41 0.22 -7.63 16 16 C -0.06 -2.29 10.01 22.26 0.22 -2.06 16 17 C -0.25 -11.45 7.00 22.72 0.16 -11.29 16 18 C 0.10 5.34 5.03 -21.11 -0.11 5.23 16 19 C -0.45 -27.45 8.31 23.41 0.19 -27.26 16 20 H 0.07 5.07 5.96 -2.91 -0.02 5.05 16 21 C 0.04 2.05 5.47 85.37 0.47 2.51 16 22 N -0.85 -50.23 13.92 21.88 0.30 -49.92 16 23 Si 0.97 44.40 24.52 68.60 1.68 46.08 16 24 H -0.25 -10.28 6.76 99.48 0.67 -9.61 16 25 H -0.25 -11.58 6.73 99.48 0.67 -10.91 16 26 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 27 C -0.16 -4.05 9.64 22.37 0.22 -3.83 16 28 H 0.07 0.55 7.66 -2.39 -0.02 0.53 16 29 H 0.07 0.54 7.66 -2.39 -0.02 0.53 16 30 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.15 1.72 6.30 -2.91 -0.02 1.70 16 32 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.08 0.66 8.08 -2.39 -0.02 0.64 16 34 H 0.07 0.80 8.09 -2.39 -0.02 0.78 16 35 H 0.13 2.68 8.06 -2.91 -0.02 2.66 16 36 H 0.07 2.24 8.08 -2.39 -0.02 2.22 16 37 H 0.06 2.02 8.08 -2.39 -0.02 2.01 16 38 H 0.41 12.04 6.51 -92.71 -0.60 11.43 16 39 H 0.14 3.85 6.42 -2.91 -0.02 3.84 16 40 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 41 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 42 H 0.10 4.73 5.01 -2.91 -0.01 4.71 16 43 H 0.29 15.47 8.29 -92.71 -0.77 14.71 16 44 H 0.12 3.27 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -76.28 363.37 3.54 -72.74 By element: Atomic # 1 Polarization: 30.92 SS G_CDS: 0.36 Total: 31.28 kcal Atomic # 6 Polarization: -35.31 SS G_CDS: 4.80 Total: -30.51 kcal Atomic # 7 Polarization: -75.94 SS G_CDS: -2.28 Total: -78.22 kcal Atomic # 8 Polarization: -40.35 SS G_CDS: -1.03 Total: -41.37 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.68 Total: 46.08 kcal Total: -76.28 3.54 -72.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362517679.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.729 kcal (2) G-P(sol) polarization free energy of solvation -76.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds