Wall clock time and date at job start Tue Mar 31 2020 14:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47178 * 2 1 4 4 C 1.50708 * 109.46839 * 185.06424 * 3 2 1 5 5 C 1.38261 * 119.99797 * 265.89951 * 4 3 2 6 6 C 1.38213 * 119.99696 * 179.97438 * 5 4 3 7 7 C 1.38262 * 120.00152 * 0.02582 * 6 5 4 8 8 C 1.38216 * 119.99553 * 359.76675 * 7 6 5 9 9 C 1.38212 * 119.99778 * 85.92885 * 4 3 2 10 10 S 1.76193 * 120.00432 * 359.97438 * 9 4 3 11 11 O 1.42107 * 106.40166 * 52.86544 * 10 9 4 12 12 O 1.42101 * 106.40266 * 279.94700 * 10 9 4 13 13 N 1.65593 * 107.22255 * 166.40357 * 10 9 4 14 14 C 1.46500 * 119.99722 * 94.34803 * 13 10 9 15 15 C 1.50697 * 109.47048 * 94.23434 * 14 13 10 16 16 H 1.08002 * 120.00188 * 4.76367 * 15 14 13 17 17 C 1.37887 * 120.00165 * 184.76464 * 15 14 13 18 18 N 1.31513 * 119.99399 * 5.05344 * 17 15 14 19 19 Si 1.86791 * 119.99979 * 185.05081 * 17 15 14 20 20 H 1.48494 * 109.47457 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47130 * 120.00016 * 19 17 15 22 22 H 1.48505 * 109.47235 * 239.99978 * 19 17 15 23 23 C 1.46500 * 120.00513 * 274.35269 * 13 10 9 24 24 C 1.52998 * 109.47189 * 119.99524 * 23 13 10 25 25 C 1.52995 * 109.47349 * 239.99792 * 23 13 10 26 26 H 1.09001 * 109.46878 * 184.97058 * 1 2 3 27 27 H 1.08997 * 109.46872 * 304.97183 * 1 2 3 28 28 H 1.08997 * 109.46873 * 64.97557 * 1 2 3 29 29 H 1.09004 * 109.47283 * 239.99410 * 2 1 3 30 30 H 1.09009 * 109.47087 * 120.00296 * 2 1 3 31 31 H 1.08999 * 109.46967 * 65.06364 * 3 2 1 32 32 H 1.08998 * 109.47120 * 305.06376 * 3 2 1 33 33 H 1.07994 * 120.00161 * 0.02562 * 5 4 3 34 34 H 1.07993 * 119.99889 * 180.02562 * 6 5 4 35 35 H 1.07998 * 119.99653 * 179.97438 * 7 6 5 36 36 H 1.08004 * 119.99388 * 180.25374 * 8 7 6 37 37 H 1.09001 * 109.47333 * 214.23221 * 14 13 10 38 38 H 1.08999 * 109.47513 * 334.23021 * 14 13 10 39 39 H 0.97006 * 119.99484 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.46427 * 359.97438 * 23 13 10 41 41 H 1.09000 * 109.47567 * 60.00203 * 24 23 13 42 42 H 1.09004 * 109.46922 * 180.02562 * 24 23 13 43 43 H 1.09005 * 109.46926 * 300.00020 * 24 23 13 44 44 H 1.09003 * 109.46975 * 59.99349 * 25 23 13 45 45 H 1.08996 * 109.47267 * 179.97438 * 25 23 13 46 46 H 1.09000 * 109.47270 * 299.99929 * 25 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5418 1.4442 -0.1254 5 6 4.3302 1.4955 1.0092 6 6 5.7075 1.4966 0.8942 7 6 6.2970 1.4469 -0.3555 8 6 5.5088 1.3914 -1.4895 9 6 4.1310 1.3952 -1.3747 10 16 3.1263 1.3300 -2.8207 11 8 2.2160 2.4171 -2.7262 12 8 2.7108 -0.0217 -2.9600 13 7 4.1078 1.6533 -4.1146 14 6 4.7173 0.5523 -4.8647 15 6 3.8486 0.2086 -6.0471 16 1 2.9750 0.8044 -6.2668 17 6 4.1691 -0.8667 -6.8487 18 7 5.1738 -1.6513 -6.5255 19 14 3.1762 -1.2088 -8.3934 20 1 2.1080 -0.1865 -8.5318 21 1 4.0695 -1.1540 -9.5784 22 1 2.5619 -2.5575 -8.2984 23 6 4.3667 3.0402 -4.5093 24 6 5.8681 3.3224 -4.4256 25 6 3.8857 3.2602 -5.9450 26 1 -0.3633 -1.0238 0.0890 27 1 -0.3633 0.5890 0.8421 28 1 -0.3633 0.4347 -0.9312 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.7526 1.9294 0.9319 32 1 1.6045 1.9818 -0.8411 33 1 3.8698 1.5338 1.9854 34 1 6.3234 1.5362 1.7805 35 1 7.3732 1.4482 -0.4453 36 1 5.9692 1.3485 -2.4655 37 1 5.7046 0.8538 -5.2147 38 1 4.8120 -0.3197 -4.2176 39 1 5.3991 -2.4079 -7.0891 40 1 3.8320 3.7141 -3.8400 41 1 6.4025 2.6484 -5.0950 42 1 6.0607 4.3545 -4.7188 43 1 6.2107 3.1657 -3.4027 44 1 2.8161 3.0590 -6.0046 45 1 4.0780 4.2921 -6.2384 46 1 4.4200 2.5861 -6.6145 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365031953.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:55 Heat of formation + Delta-G solvation = -62.593139 kcal Electronic energy + Delta-G solvation = -27450.780604 eV Core-core repulsion = 23852.987409 eV Total energy + Delta-G solvation = -3597.793194 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.38735 -37.03226 -36.54199 -35.53900 -34.70771 -32.77751 -31.19212 -31.10700 -30.60627 -27.03064 -26.59594 -26.39908 -23.13203 -22.81541 -22.30296 -20.97149 -20.28026 -18.31725 -17.45010 -16.94940 -16.36351 -15.77724 -15.51600 -15.33565 -14.51914 -14.47085 -14.30234 -13.94079 -13.68499 -13.57326 -13.46390 -13.04181 -12.57754 -12.41271 -12.35322 -12.25605 -12.03377 -11.71267 -11.63422 -11.52597 -11.41191 -11.19678 -11.12786 -11.04138 -10.95851 -10.83289 -10.78468 -10.52440 -10.40496 -10.28418 -10.12116 -9.86288 -9.55853 -9.21640 -8.74581 -8.41621 -8.11159 -6.05148 -4.06938 0.94850 1.06045 1.34994 3.31483 3.39884 3.43716 3.53538 3.59838 4.28201 4.45550 4.61217 4.79417 4.91750 5.09576 5.12327 5.20487 5.22298 5.30781 5.32183 5.42467 5.48274 5.58727 5.62332 5.67786 5.78630 5.86001 5.90344 5.91158 6.00504 6.12049 6.18096 6.21118 6.23660 6.25680 6.37743 6.44327 6.44936 6.47057 6.54217 6.74498 6.92132 7.11214 7.23983 7.40518 7.63151 7.93253 8.21998 8.94798 9.56902 11.03758 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013311 B = 0.005186 C = 0.004583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.012894 B = 5398.081363 C = 6107.887700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.138 4.138 3 C -0.134 4.134 4 C 0.018 3.982 5 C -0.141 4.141 6 C -0.074 4.074 7 C -0.146 4.146 8 C -0.025 4.025 9 C -0.667 4.667 10 S 2.683 3.317 11 O -0.975 6.975 12 O -0.936 6.936 13 N -0.979 5.979 14 C 0.250 3.750 15 C -0.524 4.524 16 H 0.065 0.935 17 C 0.063 3.937 18 N -0.894 5.894 19 Si 0.893 3.107 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.283 1.283 23 C 0.148 3.852 24 C -0.166 4.166 25 C -0.153 4.153 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.141 0.859 37 H 0.038 0.962 38 H 0.045 0.955 39 H 0.262 0.738 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.059 0.941 43 H 0.050 0.950 44 H 0.055 0.945 45 H 0.047 0.953 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.869 8.431 13.142 15.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.175 4.175 3 C -0.171 4.171 4 C 0.016 3.984 5 C -0.160 4.160 6 C -0.092 4.092 7 C -0.164 4.164 8 C -0.044 4.044 9 C -0.751 4.751 10 S 2.772 3.228 11 O -0.965 6.965 12 O -0.926 6.926 13 N -0.820 5.820 14 C 0.129 3.871 15 C -0.563 4.563 16 H 0.083 0.917 17 C -0.139 4.139 18 N -0.533 5.533 19 Si 0.720 3.280 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.209 1.209 23 C 0.041 3.959 24 C -0.225 4.225 25 C -0.212 4.212 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.104 0.896 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.120 0.880 33 H 0.145 0.855 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.158 0.842 37 H 0.055 0.945 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.099 0.901 41 H 0.090 0.910 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.066 0.934 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.105 8.077 13.092 15.383 hybrid contribution 0.374 -0.268 -0.330 0.567 sum 0.479 7.809 12.761 14.968 Atomic orbital electron populations 1.21766 0.95157 1.01903 1.02056 1.21756 0.96623 0.95083 1.04069 1.21396 0.90597 0.99257 1.05822 1.19446 0.95608 0.91714 0.91598 1.21093 0.93841 1.03108 0.97975 1.21340 0.94846 0.95434 0.97609 1.21243 1.00111 1.02464 0.92616 1.21067 0.91588 0.91743 0.99974 1.31313 1.09110 1.15985 1.18665 1.02419 0.73843 0.74022 0.72517 1.93478 1.60143 1.56018 1.86890 1.93615 1.79225 1.34616 1.85125 1.57534 1.68286 1.13001 1.43189 1.19178 0.93995 0.82344 0.91614 1.21541 1.11357 1.12895 1.10522 0.91702 1.24920 0.95393 0.95382 0.98244 1.69935 1.28854 1.16329 1.38150 0.86522 0.80145 0.78405 0.82886 1.19588 1.21003 1.20924 1.20690 0.95588 0.81782 0.97806 1.22258 0.96678 1.01655 1.01896 1.22131 1.02260 1.00489 0.96321 0.92284 0.92832 0.92184 0.89554 0.91591 0.89568 0.87955 0.85525 0.85669 0.85375 0.84169 0.94456 0.93711 0.92800 0.90147 0.91012 0.92154 0.93054 0.92570 0.93371 0.89747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 37.16 0.37 -1.57 16 2 C -0.14 -2.02 5.92 -26.73 -0.16 -2.18 16 3 C -0.13 -1.97 4.81 -27.88 -0.13 -2.10 16 4 C 0.02 0.28 5.13 -104.62 -0.54 -0.26 16 5 C -0.14 -1.81 9.69 -39.58 -0.38 -2.19 16 6 C -0.07 -0.87 10.05 -39.58 -0.40 -1.27 16 7 C -0.15 -1.88 10.05 -39.58 -0.40 -2.28 16 8 C -0.03 -0.39 9.14 -39.58 -0.36 -0.75 16 9 C -0.67 -11.68 5.83 -39.58 -0.23 -11.91 16 10 S 2.68 55.29 4.71 -107.50 -0.51 54.78 16 11 O -0.98 -20.44 14.41 -57.17 -0.82 -21.27 16 12 O -0.94 -22.53 15.06 -57.17 -0.86 -23.39 16 13 N -0.98 -19.95 1.75 -108.58 -0.19 -20.14 16 14 C 0.25 5.98 4.40 -5.20 -0.02 5.95 16 15 C -0.52 -14.02 7.66 -34.44 -0.26 -14.29 16 16 H 0.06 1.74 6.92 -52.49 -0.36 1.37 16 17 C 0.06 1.74 5.45 -17.82 -0.10 1.64 16 18 N -0.89 -25.56 13.29 55.43 0.74 -24.83 16 19 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 C 0.15 2.55 3.22 -67.93 -0.22 2.33 16 24 C -0.17 -2.38 9.02 37.16 0.34 -2.04 16 25 C -0.15 -2.67 8.16 37.16 0.30 -2.36 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.09 1.53 6.22 -51.93 -0.32 1.20 16 30 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 31 H 0.09 1.00 8.06 -51.93 -0.42 0.58 16 32 H 0.10 1.70 5.24 -51.93 -0.27 1.43 16 33 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 34 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 36 H 0.14 2.15 5.87 -52.48 -0.31 1.84 16 37 H 0.04 0.87 6.44 -51.93 -0.33 0.54 16 38 H 0.04 1.17 7.51 -51.93 -0.39 0.78 16 39 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.08 1.31 7.03 -51.93 -0.37 0.95 16 41 H 0.07 1.10 6.69 -51.93 -0.35 0.76 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.05 0.67 6.61 -51.93 -0.34 0.33 16 44 H 0.06 1.04 7.89 -51.93 -0.41 0.63 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.08 1.63 6.70 -51.93 -0.35 1.28 16 LS Contribution 371.01 15.07 5.59 5.59 Total: -1.00 -31.86 371.01 -10.43 -42.30 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -7.16 Total: 3.86 kcal Atomic # 6 Polarization: -31.09 SS G_CDS: -2.20 Total: -33.28 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: 0.55 Total: -44.96 kcal Atomic # 8 Polarization: -42.97 SS G_CDS: -1.68 Total: -44.66 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 55.29 SS G_CDS: -0.51 Total: 54.78 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.86 -10.43 -42.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365031953.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.296 kcal (2) G-P(sol) polarization free energy of solvation -31.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds