Wall clock time and date at job start Tue Mar 31 2020 14:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47178 * 2 1 4 4 C 1.50708 * 109.46839 * 185.06424 * 3 2 1 5 5 C 1.38261 * 119.99797 * 265.89951 * 4 3 2 6 6 C 1.38213 * 119.99696 * 179.97438 * 5 4 3 7 7 C 1.38262 * 120.00152 * 0.02582 * 6 5 4 8 8 C 1.38216 * 119.99553 * 359.76675 * 7 6 5 9 9 C 1.38212 * 119.99778 * 85.92885 * 4 3 2 10 10 S 1.76193 * 120.00432 * 359.97438 * 9 4 3 11 11 O 1.42107 * 106.40166 * 52.86544 * 10 9 4 12 12 O 1.42101 * 106.40266 * 279.94700 * 10 9 4 13 13 N 1.65593 * 107.22255 * 166.40357 * 10 9 4 14 14 C 1.46500 * 119.99722 * 94.34803 * 13 10 9 15 15 C 1.50697 * 109.47048 * 94.23434 * 14 13 10 16 16 H 1.08002 * 120.00188 * 4.76367 * 15 14 13 17 17 C 1.37887 * 120.00165 * 184.76464 * 15 14 13 18 18 N 1.31513 * 119.99399 * 5.05344 * 17 15 14 19 19 Si 1.86791 * 119.99979 * 185.05081 * 17 15 14 20 20 H 1.48494 * 109.47457 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47130 * 120.00016 * 19 17 15 22 22 H 1.48505 * 109.47235 * 239.99978 * 19 17 15 23 23 C 1.46500 * 120.00513 * 274.35269 * 13 10 9 24 24 C 1.52998 * 109.47189 * 119.99524 * 23 13 10 25 25 C 1.52995 * 109.47349 * 239.99792 * 23 13 10 26 26 H 1.09001 * 109.46878 * 184.97058 * 1 2 3 27 27 H 1.08997 * 109.46872 * 304.97183 * 1 2 3 28 28 H 1.08997 * 109.46873 * 64.97557 * 1 2 3 29 29 H 1.09004 * 109.47283 * 239.99410 * 2 1 3 30 30 H 1.09009 * 109.47087 * 120.00296 * 2 1 3 31 31 H 1.08999 * 109.46967 * 65.06364 * 3 2 1 32 32 H 1.08998 * 109.47120 * 305.06376 * 3 2 1 33 33 H 1.07994 * 120.00161 * 0.02562 * 5 4 3 34 34 H 1.07993 * 119.99889 * 180.02562 * 6 5 4 35 35 H 1.07998 * 119.99653 * 179.97438 * 7 6 5 36 36 H 1.08004 * 119.99388 * 180.25374 * 8 7 6 37 37 H 1.09001 * 109.47333 * 214.23221 * 14 13 10 38 38 H 1.08999 * 109.47513 * 334.23021 * 14 13 10 39 39 H 0.97006 * 119.99484 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.46427 * 359.97438 * 23 13 10 41 41 H 1.09000 * 109.47567 * 60.00203 * 24 23 13 42 42 H 1.09004 * 109.46922 * 180.02562 * 24 23 13 43 43 H 1.09005 * 109.46926 * 300.00020 * 24 23 13 44 44 H 1.09003 * 109.46975 * 59.99349 * 25 23 13 45 45 H 1.08996 * 109.47267 * 179.97438 * 25 23 13 46 46 H 1.09000 * 109.47270 * 299.99929 * 25 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5418 1.4442 -0.1254 5 6 4.3302 1.4955 1.0092 6 6 5.7075 1.4966 0.8942 7 6 6.2970 1.4469 -0.3555 8 6 5.5088 1.3914 -1.4895 9 6 4.1310 1.3952 -1.3747 10 16 3.1263 1.3300 -2.8207 11 8 2.2160 2.4171 -2.7262 12 8 2.7108 -0.0217 -2.9600 13 7 4.1078 1.6533 -4.1146 14 6 4.7173 0.5523 -4.8647 15 6 3.8486 0.2086 -6.0471 16 1 2.9750 0.8044 -6.2668 17 6 4.1691 -0.8667 -6.8487 18 7 5.1738 -1.6513 -6.5255 19 14 3.1762 -1.2088 -8.3934 20 1 2.1080 -0.1865 -8.5318 21 1 4.0695 -1.1540 -9.5784 22 1 2.5619 -2.5575 -8.2984 23 6 4.3667 3.0402 -4.5093 24 6 5.8681 3.3224 -4.4256 25 6 3.8857 3.2602 -5.9450 26 1 -0.3633 -1.0238 0.0890 27 1 -0.3633 0.5890 0.8421 28 1 -0.3633 0.4347 -0.9312 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.7526 1.9294 0.9319 32 1 1.6045 1.9818 -0.8411 33 1 3.8698 1.5338 1.9854 34 1 6.3234 1.5362 1.7805 35 1 7.3732 1.4482 -0.4453 36 1 5.9692 1.3485 -2.4655 37 1 5.7046 0.8538 -5.2147 38 1 4.8120 -0.3197 -4.2176 39 1 5.3991 -2.4079 -7.0891 40 1 3.8320 3.7141 -3.8400 41 1 6.4025 2.6484 -5.0950 42 1 6.0607 4.3545 -4.7188 43 1 6.2107 3.1657 -3.4027 44 1 2.8161 3.0590 -6.0046 45 1 4.0780 4.2921 -6.2384 46 1 4.4200 2.5861 -6.6145 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365031953.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:54 Heat of formation + Delta-G solvation = -81.402988 kcal Electronic energy + Delta-G solvation = -27451.596260 eV Core-core repulsion = 23852.987409 eV Total energy + Delta-G solvation = -3598.608851 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.46513 -38.58449 -38.21399 -37.05981 -35.98791 -34.80223 -32.37346 -32.24352 -32.06549 -28.90692 -27.92342 -27.50440 -24.78904 -24.24282 -23.39450 -22.17953 -21.66570 -19.79845 -18.95705 -18.63473 -18.17757 -17.05081 -16.87946 -16.69617 -16.39592 -15.65973 -15.45135 -15.36170 -14.98821 -14.87947 -14.73479 -14.51827 -14.10161 -13.83065 -13.61575 -13.52842 -13.39117 -13.29943 -13.04522 -12.93224 -12.88771 -12.75234 -12.73984 -12.62260 -12.44262 -12.24374 -12.11222 -12.04616 -11.98161 -11.65144 -11.54727 -11.42395 -11.34470 -10.54258 -10.31765 -9.82717 -9.80694 -8.16849 -6.24750 -0.52375 -0.15299 0.29430 1.38217 1.41060 1.52037 1.99804 2.42917 2.51890 2.76251 3.14686 3.53425 3.62287 3.72806 3.84766 3.96181 4.04139 4.13052 4.26622 4.29831 4.34018 4.39694 4.40867 4.53691 4.58473 4.69417 4.78968 4.86194 4.89666 4.92104 4.94003 5.08351 5.09283 5.12513 5.16486 5.20218 5.20605 5.33166 5.36547 5.38223 5.39104 5.55089 5.66531 5.79052 5.91105 5.99902 6.16173 6.81979 7.41802 8.91589 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013311 B = 0.005186 C = 0.004583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.012894 B = 5398.081363 C = 6107.887700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.141 4.141 3 C -0.136 4.136 4 C -0.002 4.002 5 C -0.137 4.137 6 C -0.060 4.060 7 C -0.144 4.144 8 C -0.045 4.045 9 C -0.684 4.684 10 S 2.683 3.317 11 O -0.991 6.991 12 O -0.987 6.987 13 N -0.983 5.983 14 C 0.269 3.731 15 C -0.534 4.534 16 H 0.056 0.944 17 C 0.013 3.987 18 N -0.925 5.925 19 Si 0.949 3.051 20 H -0.269 1.269 21 H -0.270 1.270 22 H -0.284 1.284 23 C 0.136 3.864 24 C -0.159 4.159 25 C -0.152 4.152 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.038 0.962 29 H 0.045 0.955 30 H 0.089 0.911 31 H 0.123 0.877 32 H 0.074 0.926 33 H 0.165 0.835 34 H 0.172 0.828 35 H 0.159 0.841 36 H 0.133 0.867 37 H 0.041 0.959 38 H 0.014 0.986 39 H 0.265 0.735 40 H 0.090 0.910 41 H 0.056 0.944 42 H 0.091 0.909 43 H 0.063 0.937 44 H 0.034 0.966 45 H 0.085 0.915 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.078 9.976 15.735 18.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.179 4.179 3 C -0.174 4.174 4 C -0.004 4.004 5 C -0.155 4.155 6 C -0.078 4.078 7 C -0.163 4.163 8 C -0.064 4.064 9 C -0.773 4.773 10 S 2.778 3.222 11 O -0.981 6.981 12 O -0.978 6.978 13 N -0.823 5.823 14 C 0.146 3.854 15 C -0.573 4.573 16 H 0.074 0.926 17 C -0.186 4.186 18 N -0.565 5.565 19 Si 0.775 3.225 20 H -0.193 1.193 21 H -0.195 1.195 22 H -0.211 1.211 23 C 0.031 3.969 24 C -0.217 4.217 25 C -0.210 4.210 26 H 0.086 0.914 27 H 0.101 0.899 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.108 0.892 31 H 0.141 0.859 32 H 0.093 0.907 33 H 0.182 0.818 34 H 0.189 0.811 35 H 0.177 0.823 36 H 0.151 0.849 37 H 0.059 0.941 38 H 0.032 0.968 39 H 0.074 0.926 40 H 0.108 0.892 41 H 0.075 0.925 42 H 0.110 0.890 43 H 0.082 0.918 44 H 0.053 0.947 45 H 0.104 0.896 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.279 9.646 15.622 18.404 hybrid contribution 0.035 -0.692 -0.979 1.200 sum 1.314 8.954 14.642 17.213 Atomic orbital electron populations 1.21798 0.94017 1.02928 1.02232 1.21774 0.97784 0.95153 1.03156 1.21445 0.90383 0.99033 1.06493 1.19724 0.96319 0.92475 0.91853 1.21544 0.94336 1.01349 0.98316 1.21913 0.94893 0.92350 0.98612 1.21649 1.01503 1.01009 0.92105 1.21178 0.91124 0.93005 1.01134 1.30637 1.09408 1.19905 1.17365 1.01875 0.74120 0.72773 0.73401 1.93443 1.61443 1.55860 1.87397 1.93548 1.80839 1.37087 1.86286 1.57362 1.67856 1.13511 1.43605 1.18704 0.93821 0.82498 0.90349 1.21841 1.11272 1.12742 1.11477 0.92580 1.25677 0.96507 0.95373 1.01083 1.70028 1.30243 1.16886 1.39330 0.85638 0.79038 0.77928 0.79927 1.19292 1.19477 1.21061 1.21027 0.98011 0.80163 0.97690 1.22200 0.93873 1.03146 1.02503 1.22109 1.00478 1.02264 0.96186 0.91387 0.89888 0.94248 0.93661 0.89210 0.85860 0.90737 0.81793 0.81082 0.82297 0.84942 0.94119 0.96774 0.92596 0.89166 0.92472 0.88987 0.91793 0.94693 0.89585 0.91987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.87 9.91 71.98 0.71 -3.16 16 2 C -0.14 -4.15 5.92 30.59 0.18 -3.97 16 3 C -0.14 -3.93 4.81 29.85 0.14 -3.78 16 4 C 0.00 -0.06 5.13 -19.86 -0.10 -0.16 16 5 C -0.14 -2.95 9.69 22.27 0.22 -2.73 16 6 C -0.06 -1.11 10.05 22.27 0.22 -0.89 16 7 C -0.14 -3.25 10.05 22.27 0.22 -3.03 16 8 C -0.05 -1.40 9.14 22.27 0.20 -1.20 16 9 C -0.68 -24.25 5.83 22.27 0.13 -24.12 16 10 S 2.68 117.33 4.71 -56.49 -0.27 117.07 16 11 O -0.99 -43.90 14.41 -128.00 -1.84 -45.75 16 12 O -0.99 -51.62 15.06 -128.00 -1.93 -53.55 16 13 N -0.98 -42.08 1.75 -497.43 -0.87 -42.96 16 14 C 0.27 13.61 4.40 85.63 0.38 13.99 16 15 C -0.53 -29.98 7.66 25.60 0.20 -29.78 16 16 H 0.06 3.17 6.92 -2.91 -0.02 3.15 16 17 C 0.01 0.73 5.45 84.66 0.46 1.19 16 18 N -0.92 -54.64 13.29 21.45 0.28 -54.36 16 19 Si 0.95 45.01 29.54 68.60 2.03 47.04 16 20 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 22 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 23 C 0.14 4.77 3.22 44.99 0.15 4.92 16 24 C -0.16 -4.40 9.02 71.98 0.65 -3.75 16 25 C -0.15 -5.36 8.16 71.98 0.59 -4.78 16 26 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.04 1.70 6.22 -2.39 -0.01 1.69 16 30 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 31 H 0.12 2.51 8.06 -2.39 -0.02 2.49 16 32 H 0.07 2.56 5.24 -2.39 -0.01 2.55 16 33 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 34 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 35 H 0.16 2.55 8.06 -2.91 -0.02 2.52 16 36 H 0.13 4.16 5.87 -2.91 -0.02 4.14 16 37 H 0.04 2.01 6.44 -2.39 -0.02 1.99 16 38 H 0.01 0.80 7.51 -2.39 -0.02 0.78 16 39 H 0.27 14.76 8.31 -92.70 -0.77 13.99 16 40 H 0.09 2.97 7.03 -2.39 -0.02 2.95 16 41 H 0.06 1.75 6.69 -2.39 -0.02 1.74 16 42 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.06 1.60 6.61 -2.38 -0.02 1.58 16 44 H 0.03 1.34 7.89 -2.39 -0.02 1.32 16 45 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 46 H 0.06 2.46 6.70 -2.39 -0.02 2.44 16 Total: -1.00 -74.56 371.01 2.71 -71.85 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: 0.96 Total: 21.90 kcal Atomic # 6 Polarization: -65.60 SS G_CDS: 4.35 Total: -61.25 kcal Atomic # 7 Polarization: -96.73 SS G_CDS: -0.59 Total: -97.31 kcal Atomic # 8 Polarization: -95.52 SS G_CDS: -3.77 Total: -99.29 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Atomic # 16 Polarization: 117.33 SS G_CDS: -0.27 Total: 117.07 kcal Total: -74.56 2.71 -71.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365031953.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.556 kcal (2) G-P(sol) polarization free energy of solvation -74.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds