Wall clock time and date at job start Tue Mar 31 2020 13:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35897 * 117.00036 * 2 1 4 4 C 1.38746 * 120.05751 * 359.97438 * 3 2 1 5 5 C 1.38130 * 119.94675 * 180.02562 * 4 3 2 6 6 C 1.50694 * 119.97228 * 180.02562 * 5 4 3 7 7 C 1.38287 * 120.05373 * 0.02562 * 5 4 3 8 8 C 1.38242 * 120.11017 * 359.70079 * 7 5 4 9 9 C 1.38169 * 120.05757 * 0.55526 * 8 7 5 10 10 C 1.50693 * 120.02969 * 179.74444 * 9 8 7 11 11 N 1.46504 * 109.47206 * 259.72544 * 10 9 8 12 12 C 1.34775 * 120.00020 * 179.97438 * 11 10 9 13 13 O 1.21617 * 120.00035 * 0.02562 * 12 11 10 14 14 C 1.47433 * 120.00159 * 179.97438 * 12 11 10 15 15 C 1.39222 * 120.27950 * 355.67294 * 14 12 11 16 16 C 1.38228 * 120.09079 * 180.27937 * 15 14 12 17 17 C 1.38824 * 120.67423 * 359.71805 * 16 15 14 18 18 C 1.37597 * 120.57318 * 0.02562 * 17 16 15 19 19 C 1.40711 * 119.87929 * 359.97438 * 18 17 16 20 20 C 1.40891 * 120.32596 * 180.02562 * 19 18 17 21 21 H 1.08004 * 119.99615 * 216.32947 * 20 19 18 22 22 C 1.40267 * 120.00197 * 36.33258 * 20 19 18 23 23 N 1.30625 * 120.00058 * 190.50733 * 22 20 19 24 24 Si 1.86802 * 120.00015 * 10.50211 * 22 20 19 25 25 H 1.48509 * 109.46965 * 267.22708 * 24 22 20 26 26 H 1.48499 * 109.47061 * 27.22336 * 24 22 20 27 27 H 1.48502 * 109.47123 * 147.22806 * 24 22 20 28 28 H 1.09000 * 109.47326 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47067 * 300.00267 * 1 2 3 30 30 H 1.09010 * 109.46650 * 59.99947 * 1 2 3 31 31 H 1.08001 * 120.02668 * 359.97438 * 4 3 2 32 32 H 1.09006 * 109.47377 * 90.00010 * 6 5 4 33 33 H 1.09002 * 109.47301 * 209.99674 * 6 5 4 34 34 H 1.09005 * 109.47326 * 329.99957 * 6 5 4 35 35 H 1.07997 * 119.94192 * 180.02562 * 7 5 4 36 36 H 1.08004 * 119.97099 * 180.27487 * 8 7 5 37 37 H 1.08992 * 109.47584 * 139.72319 * 10 9 8 38 38 H 1.09004 * 109.47483 * 19.72068 * 10 9 8 39 39 H 0.97001 * 119.99703 * 359.97438 * 11 10 9 40 40 H 1.08001 * 119.95839 * 359.97438 * 15 14 12 41 41 H 1.08003 * 119.66408 * 179.73476 * 16 15 14 42 42 H 1.08000 * 119.71145 * 180.02562 * 17 16 15 43 43 H 1.07996 * 120.06329 * 180.02562 * 18 17 16 44 44 H 0.97003 * 120.00012 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3752 -0.0005 5 6 1.9210 3.6048 -0.0011 6 6 1.1021 4.8698 -0.0011 7 6 3.3020 3.6758 -0.0016 8 6 4.0560 2.5171 0.0046 9 6 3.4311 1.2848 -0.0002 10 6 4.2537 0.0221 0.0008 11 7 4.3193 -0.5190 -1.3590 12 6 5.0072 -1.6525 -1.6007 13 8 5.5731 -2.2264 -0.6899 14 6 5.0728 -2.1975 -2.9691 15 6 4.3535 -1.5973 -3.9989 16 6 4.4132 -2.1149 -5.2792 17 6 5.1914 -3.2306 -5.5565 18 6 5.9176 -3.8424 -4.5606 19 6 5.8741 -3.3353 -3.2488 20 6 6.6143 -3.9540 -2.2220 21 1 6.2080 -4.0118 -1.2230 22 6 7.8790 -4.4947 -2.4972 23 7 8.4763 -5.2439 -1.6094 24 14 8.7091 -4.1434 -4.1333 25 1 8.3774 -5.2223 -5.0984 26 1 8.2294 -2.8414 -4.6623 27 1 10.1805 -4.0873 -3.9400 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 0.2129 2.3203 -0.0014 32 1 0.9050 5.1751 1.0266 33 1 1.6515 5.6583 -0.5153 34 1 0.1573 4.6911 -0.5145 35 1 3.7923 4.6380 -0.0016 36 1 5.1345 2.5752 0.0087 37 1 3.7925 -0.7115 0.6619 38 1 5.2612 0.2450 0.3521 39 1 3.8677 -0.0615 -2.0854 40 1 3.7440 -0.7290 -3.7963 41 1 3.8490 -1.6464 -6.0721 42 1 5.2271 -3.6218 -6.5625 43 1 6.5206 -4.7096 -4.7856 44 1 9.3510 -5.6176 -1.7996 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412646225.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:58 Heat of formation + Delta-G solvation = -30.446608 kcal Electronic energy + Delta-G solvation = -26725.286531 eV Core-core repulsion = 22993.443363 eV Total energy + Delta-G solvation = -3731.843168 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.47205 -38.88352 -37.73296 -36.93710 -34.69192 -33.60675 -32.37557 -30.40892 -30.29914 -30.09058 -28.32056 -27.42251 -25.41392 -24.28957 -22.37213 -22.21059 -21.24506 -20.72827 -19.43172 -17.76748 -17.46741 -16.78592 -16.44483 -15.90041 -15.55444 -15.28126 -14.85846 -14.43112 -14.26429 -14.04646 -13.98564 -13.87237 -13.83628 -13.49807 -12.83843 -12.64886 -12.56918 -12.47428 -12.21533 -12.13680 -11.99036 -11.80594 -11.51077 -11.31435 -11.07696 -10.92596 -10.85619 -10.64058 -10.39085 -10.11865 -9.76004 -9.20924 -8.96590 -8.47270 -8.28062 -8.13862 -7.75897 -7.53201 -6.84846 -4.42840 1.10695 1.31601 2.17013 2.65128 3.12013 3.18756 3.20821 3.32632 3.49584 3.99223 4.09692 4.25623 4.50186 4.63153 4.67553 4.81890 4.91341 5.00179 5.01361 5.11728 5.30730 5.35681 5.41762 5.45032 5.50795 5.53992 5.77027 5.81326 5.87223 5.98407 6.06507 6.17384 6.21542 6.37692 6.46350 6.47848 6.56537 6.68068 6.84842 7.14519 7.20146 7.28021 7.30526 7.45231 7.64286 7.81595 8.07063 8.43248 8.54018 8.70062 8.93117 9.46322 10.11839 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017841 B = 0.003116 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.004058 B = 8983.972864 C = 9296.985740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.304 6.304 3 C 0.147 3.853 4 C -0.214 4.214 5 C -0.047 4.047 6 C -0.115 4.115 7 C -0.162 4.162 8 C -0.060 4.060 9 C -0.137 4.137 10 C 0.176 3.824 11 N -0.739 5.739 12 C 0.562 3.438 13 O -0.530 6.530 14 C -0.246 4.246 15 C -0.040 4.040 16 C -0.255 4.255 17 C -0.066 4.066 18 C -0.227 4.227 19 C 0.117 3.883 20 C -0.402 4.402 21 H 0.125 0.875 22 C 0.079 3.921 23 N -0.795 5.795 24 Si 0.906 3.094 25 H -0.269 1.269 26 H -0.242 1.242 27 H -0.289 1.289 28 H 0.101 0.899 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.127 0.873 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.123 0.877 36 H 0.132 0.868 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.391 0.609 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.104 0.896 44 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.186 16.399 1.519 21.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.216 6.216 3 C 0.101 3.899 4 C -0.233 4.233 5 C -0.048 4.048 6 C -0.172 4.172 7 C -0.180 4.180 8 C -0.078 4.078 9 C -0.138 4.138 10 C 0.053 3.947 11 N -0.394 5.394 12 C 0.355 3.645 13 O -0.407 6.407 14 C -0.251 4.251 15 C -0.059 4.059 16 C -0.275 4.275 17 C -0.084 4.084 18 C -0.246 4.246 19 C 0.112 3.888 20 C -0.429 4.429 21 H 0.142 0.858 22 C -0.141 4.141 23 N -0.418 5.418 24 Si 0.733 3.267 25 H -0.195 1.195 26 H -0.166 1.166 27 H -0.217 1.217 28 H 0.119 0.881 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.145 0.855 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.141 0.859 36 H 0.150 0.850 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.225 0.775 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.122 0.878 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.474 15.591 2.362 20.106 hybrid contribution -0.097 0.463 -1.079 1.178 sum -12.571 16.054 1.283 20.431 Atomic orbital electron populations 1.23069 0.78604 1.04128 1.00989 1.86216 1.21082 1.26309 1.88006 1.18893 0.91747 0.84342 0.94901 1.21066 0.99808 0.91758 1.10655 1.19699 0.94008 0.94430 0.96623 1.20811 0.99338 0.94640 1.02373 1.20915 0.93088 0.98415 1.05564 1.20982 1.00174 0.90785 0.95875 1.19400 0.90644 0.95995 1.07729 1.19794 0.98117 0.90995 0.85842 1.45974 1.56458 1.27970 1.08952 1.18336 0.77727 0.79162 0.89324 1.90724 1.44908 1.58872 1.46217 1.19427 1.12305 1.01311 0.92013 1.20777 0.95636 0.96495 0.93031 1.20273 1.08835 1.02284 0.96084 1.20725 0.95628 0.94961 0.97130 1.21142 1.06325 1.02642 0.94473 1.17558 0.90777 0.88685 0.91749 1.20202 0.99359 1.23802 0.99502 0.85795 1.26375 0.98032 0.91395 0.98329 1.69574 1.14678 1.22106 1.35449 0.86401 0.77012 0.81771 0.81565 1.19474 1.16553 1.21660 0.88110 0.92856 0.92724 0.85530 0.91027 0.91299 0.91619 0.85886 0.85000 0.91054 0.91387 0.77537 0.88807 0.88637 0.88645 0.87820 0.90330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.24 16 2 O -0.30 -4.08 9.73 -19.42 -0.19 -4.27 16 3 C 0.15 1.91 6.66 -39.22 -0.26 1.65 16 4 C -0.21 -2.27 8.69 -39.43 -0.34 -2.61 16 5 C -0.05 -0.46 5.88 -104.65 -0.62 -1.08 16 6 C -0.11 -0.78 10.01 36.00 0.36 -0.41 16 7 C -0.16 -1.64 9.70 -39.56 -0.38 -2.02 16 8 C -0.06 -0.70 9.66 -39.61 -0.38 -1.08 16 9 C -0.14 -1.87 5.26 -104.47 -0.55 -2.42 16 10 C 0.18 2.94 5.46 -5.20 -0.03 2.91 16 11 N -0.74 -13.81 5.50 -62.56 -0.34 -14.15 16 12 C 0.56 13.30 7.72 -12.52 -0.10 13.21 16 13 O -0.53 -14.53 13.54 5.26 0.07 -14.46 16 14 C -0.25 -5.95 5.92 -104.37 -0.62 -6.57 16 15 C -0.04 -0.84 9.52 -39.22 -0.37 -1.21 16 16 C -0.26 -5.17 10.03 -39.37 -0.39 -5.57 16 17 C -0.07 -1.40 10.01 -39.60 -0.40 -1.80 16 18 C -0.23 -5.48 7.00 -38.88 -0.27 -5.76 16 19 C 0.12 3.09 5.03 -106.54 -0.54 2.55 16 20 C -0.40 -11.53 8.31 -37.82 -0.31 -11.84 16 21 H 0.12 3.94 5.96 -52.48 -0.31 3.62 16 22 C 0.08 2.15 5.47 -17.30 -0.09 2.05 16 23 N -0.79 -21.99 13.92 55.56 0.77 -21.22 16 24 Si 0.91 21.13 24.52 -169.99 -4.17 16.96 16 25 H -0.27 -5.96 6.76 56.52 0.38 -5.58 16 26 H -0.24 -5.79 6.73 56.52 0.38 -5.41 16 27 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 28 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 30 H 0.05 0.42 7.66 -51.92 -0.40 0.02 16 31 H 0.13 1.07 6.30 -52.49 -0.33 0.74 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 34 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 35 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.13 1.39 8.03 -52.48 -0.42 0.97 16 37 H 0.07 1.29 7.85 -51.93 -0.41 0.89 16 38 H 0.07 1.14 8.00 -51.93 -0.42 0.73 16 39 H 0.39 6.53 6.51 -40.82 -0.27 6.26 16 40 H 0.09 1.63 6.42 -52.49 -0.34 1.30 16 41 H 0.10 1.65 8.06 -52.48 -0.42 1.23 16 42 H 0.10 1.74 8.06 -52.49 -0.42 1.31 16 43 H 0.10 2.47 5.01 -52.49 -0.26 2.20 16 44 H 0.29 7.10 8.29 -40.82 -0.34 6.77 16 LS Contribution 362.30 15.07 5.46 5.46 Total: -1.00 -32.25 362.30 -8.38 -40.64 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -5.68 Total: 9.81 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: -4.31 Total: -18.77 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: 0.43 Total: -35.37 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.12 Total: -18.73 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.17 Total: 16.96 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.25 -8.38 -40.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412646225.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.190 kcal (2) G-P(sol) polarization free energy of solvation -32.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds