Wall clock time and date at job start Tue Mar 31 2020 13:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35897 * 117.00036 * 2 1 4 4 C 1.38746 * 120.05751 * 359.97438 * 3 2 1 5 5 C 1.38130 * 119.94675 * 180.02562 * 4 3 2 6 6 C 1.50694 * 119.97228 * 180.02562 * 5 4 3 7 7 C 1.38287 * 120.05373 * 0.02562 * 5 4 3 8 8 C 1.38242 * 120.11017 * 359.70079 * 7 5 4 9 9 C 1.38169 * 120.05757 * 0.55526 * 8 7 5 10 10 C 1.50693 * 120.02969 * 179.74444 * 9 8 7 11 11 N 1.46504 * 109.47206 * 259.72544 * 10 9 8 12 12 C 1.34775 * 120.00020 * 179.97438 * 11 10 9 13 13 O 1.21617 * 120.00035 * 0.02562 * 12 11 10 14 14 C 1.47433 * 120.00159 * 179.97438 * 12 11 10 15 15 C 1.39222 * 120.27950 * 355.67294 * 14 12 11 16 16 C 1.38228 * 120.09079 * 180.27937 * 15 14 12 17 17 C 1.38824 * 120.67423 * 359.71805 * 16 15 14 18 18 C 1.37597 * 120.57318 * 0.02562 * 17 16 15 19 19 C 1.40711 * 119.87929 * 359.97438 * 18 17 16 20 20 C 1.40891 * 120.32596 * 180.02562 * 19 18 17 21 21 H 1.08004 * 119.99615 * 216.32947 * 20 19 18 22 22 C 1.40267 * 120.00197 * 36.33258 * 20 19 18 23 23 N 1.30625 * 120.00058 * 190.50733 * 22 20 19 24 24 Si 1.86802 * 120.00015 * 10.50211 * 22 20 19 25 25 H 1.48509 * 109.46965 * 267.22708 * 24 22 20 26 26 H 1.48499 * 109.47061 * 27.22336 * 24 22 20 27 27 H 1.48502 * 109.47123 * 147.22806 * 24 22 20 28 28 H 1.09000 * 109.47326 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47067 * 300.00267 * 1 2 3 30 30 H 1.09010 * 109.46650 * 59.99947 * 1 2 3 31 31 H 1.08001 * 120.02668 * 359.97438 * 4 3 2 32 32 H 1.09006 * 109.47377 * 90.00010 * 6 5 4 33 33 H 1.09002 * 109.47301 * 209.99674 * 6 5 4 34 34 H 1.09005 * 109.47326 * 329.99957 * 6 5 4 35 35 H 1.07997 * 119.94192 * 180.02562 * 7 5 4 36 36 H 1.08004 * 119.97099 * 180.27487 * 8 7 5 37 37 H 1.08992 * 109.47584 * 139.72319 * 10 9 8 38 38 H 1.09004 * 109.47483 * 19.72068 * 10 9 8 39 39 H 0.97001 * 119.99703 * 359.97438 * 11 10 9 40 40 H 1.08001 * 119.95839 * 359.97438 * 15 14 12 41 41 H 1.08003 * 119.66408 * 179.73476 * 16 15 14 42 42 H 1.08000 * 119.71145 * 180.02562 * 17 16 15 43 43 H 1.07996 * 120.06329 * 180.02562 * 18 17 16 44 44 H 0.97003 * 120.00012 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3752 -0.0005 5 6 1.9210 3.6048 -0.0011 6 6 1.1021 4.8698 -0.0011 7 6 3.3020 3.6758 -0.0016 8 6 4.0560 2.5171 0.0046 9 6 3.4311 1.2848 -0.0002 10 6 4.2537 0.0221 0.0008 11 7 4.3193 -0.5190 -1.3590 12 6 5.0072 -1.6525 -1.6007 13 8 5.5731 -2.2264 -0.6899 14 6 5.0728 -2.1975 -2.9691 15 6 4.3535 -1.5973 -3.9989 16 6 4.4132 -2.1149 -5.2792 17 6 5.1914 -3.2306 -5.5565 18 6 5.9176 -3.8424 -4.5606 19 6 5.8741 -3.3353 -3.2488 20 6 6.6143 -3.9540 -2.2220 21 1 6.2080 -4.0118 -1.2230 22 6 7.8790 -4.4947 -2.4972 23 7 8.4763 -5.2439 -1.6094 24 14 8.7091 -4.1434 -4.1333 25 1 8.3774 -5.2223 -5.0984 26 1 8.2294 -2.8414 -4.6623 27 1 10.1805 -4.0873 -3.9400 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 0.2129 2.3203 -0.0014 32 1 0.9050 5.1751 1.0266 33 1 1.6515 5.6583 -0.5153 34 1 0.1573 4.6911 -0.5145 35 1 3.7923 4.6380 -0.0016 36 1 5.1345 2.5752 0.0087 37 1 3.7925 -0.7115 0.6619 38 1 5.2612 0.2450 0.3521 39 1 3.8677 -0.0615 -2.0854 40 1 3.7440 -0.7290 -3.7963 41 1 3.8490 -1.6464 -6.0721 42 1 5.2271 -3.6218 -6.5625 43 1 6.5206 -4.7096 -4.7856 44 1 9.3510 -5.6176 -1.7996 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412646225.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:58 Heat of formation + Delta-G solvation = -51.392512 kcal Electronic energy + Delta-G solvation = -26726.194813 eV Core-core repulsion = 22993.443363 eV Total energy + Delta-G solvation = -3732.751450 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.43458 -40.64595 -38.80576 -38.52603 -36.18401 -35.46087 -33.62679 -32.28929 -31.78126 -31.08469 -29.28307 -28.31843 -27.19005 -25.50117 -23.92431 -23.21160 -22.79010 -21.95153 -21.19013 -19.50027 -18.70651 -18.23505 -17.40471 -17.19938 -16.98865 -16.58598 -16.27902 -15.82339 -15.79791 -15.55641 -15.32977 -15.20291 -14.80953 -14.49005 -14.47069 -14.13606 -14.00088 -13.70590 -13.58228 -13.23911 -13.04492 -12.98613 -12.73660 -12.67921 -12.50898 -12.27137 -12.19539 -12.04776 -11.84128 -11.74246 -11.60943 -11.08255 -10.39577 -9.99160 -9.74120 -9.51810 -9.41445 -9.11384 -8.81474 -6.48198 0.21804 0.34546 0.46022 0.83481 1.23690 1.37603 1.46974 2.10825 2.26889 2.38235 2.40900 2.71806 2.89183 3.53622 3.62733 3.81903 3.97465 4.16625 4.21901 4.24615 4.27878 4.34860 4.37902 4.43439 4.55445 4.62951 4.70573 4.72419 4.76444 4.81240 4.86357 4.87081 4.93302 5.01268 5.24734 5.30135 5.32604 5.45870 5.48796 5.59995 5.63192 5.69028 5.86679 5.86962 5.96505 6.27436 6.44920 6.47807 6.68151 6.78850 6.92501 7.64141 8.22763 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017841 B = 0.003116 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.004058 B = 8983.972864 C = 9296.985740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.337 6.337 3 C 0.136 3.864 4 C -0.214 4.214 5 C -0.042 4.042 6 C -0.114 4.114 7 C -0.162 4.162 8 C -0.064 4.064 9 C -0.161 4.161 10 C 0.182 3.818 11 N -0.716 5.716 12 C 0.553 3.447 13 O -0.580 6.580 14 C -0.265 4.265 15 C -0.040 4.040 16 C -0.230 4.230 17 C -0.061 4.061 18 C -0.246 4.246 19 C 0.100 3.900 20 C -0.450 4.450 21 H 0.070 0.930 22 C 0.035 3.965 23 N -0.850 5.850 24 Si 0.969 3.031 25 H -0.246 1.246 26 H -0.249 1.249 27 H -0.279 1.279 28 H 0.105 0.895 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.150 0.850 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.148 0.852 36 H 0.136 0.864 37 H 0.047 0.953 38 H 0.058 0.942 39 H 0.403 0.597 40 H 0.132 0.868 41 H 0.144 0.856 42 H 0.139 0.861 43 H 0.103 0.897 44 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.823 20.105 -2.054 25.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.250 6.250 3 C 0.090 3.910 4 C -0.233 4.233 5 C -0.042 4.042 6 C -0.170 4.170 7 C -0.180 4.180 8 C -0.083 4.083 9 C -0.162 4.162 10 C 0.058 3.942 11 N -0.370 5.370 12 C 0.346 3.654 13 O -0.461 6.461 14 C -0.269 4.269 15 C -0.058 4.058 16 C -0.248 4.248 17 C -0.079 4.079 18 C -0.265 4.265 19 C 0.096 3.904 20 C -0.479 4.479 21 H 0.088 0.912 22 C -0.179 4.179 23 N -0.476 5.476 24 Si 0.791 3.209 25 H -0.171 1.171 26 H -0.173 1.173 27 H -0.206 1.206 28 H 0.124 0.876 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.168 0.832 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.166 0.834 36 H 0.154 0.846 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.240 0.760 40 H 0.150 0.850 41 H 0.162 0.838 42 H 0.156 0.844 43 H 0.121 0.879 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -15.163 19.335 -1.225 24.602 hybrid contribution 0.379 -0.438 -0.022 0.579 sum -14.784 18.897 -1.248 24.026 Atomic orbital electron populations 1.23321 0.76547 1.05091 1.02545 1.86171 1.23438 1.27189 1.88238 1.19045 0.91564 0.85066 0.95368 1.21330 1.00894 0.91121 1.09913 1.20149 0.94226 0.95444 0.94393 1.20892 0.99464 0.93192 1.03498 1.21222 0.93476 0.98695 1.04590 1.21106 1.00705 0.90713 0.95749 1.19172 0.90983 0.94873 1.11147 1.19710 0.98151 0.92194 0.84095 1.45776 1.54615 1.26225 1.10347 1.18585 0.77696 0.80055 0.89073 1.90722 1.47201 1.60558 1.47638 1.19795 1.12534 1.01365 0.93229 1.21172 0.94942 0.97246 0.92469 1.20927 1.06585 1.00663 0.96669 1.21250 0.93743 0.94579 0.98303 1.21255 1.07692 1.03359 0.94184 1.17814 0.90857 0.89142 0.92548 1.19947 1.01610 1.28259 0.98108 0.91166 1.27137 0.97929 0.90934 1.01875 1.69630 1.15745 1.24608 1.37654 0.85470 0.76296 0.81547 0.77629 1.17076 1.17297 1.20604 0.87626 0.91216 0.91114 0.83240 0.89812 0.90053 0.90437 0.83384 0.84589 0.93481 0.92342 0.76041 0.85017 0.83778 0.84351 0.87881 0.89622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.43 16 2 O -0.34 -9.01 9.73 -92.39 -0.90 -9.90 16 3 C 0.14 3.39 6.66 22.51 0.15 3.54 16 4 C -0.21 -3.96 8.69 22.37 0.19 -3.77 16 5 C -0.04 -0.67 5.88 -19.88 -0.12 -0.79 16 6 C -0.11 -1.04 10.01 71.23 0.71 -0.33 16 7 C -0.16 -2.83 9.70 22.28 0.22 -2.62 16 8 C -0.06 -1.44 9.66 22.25 0.22 -1.23 16 9 C -0.16 -4.41 5.26 -19.77 -0.10 -4.51 16 10 C 0.18 6.45 5.46 85.63 0.47 6.91 16 11 N -0.72 -27.50 5.50 -470.10 -2.58 -30.09 16 12 C 0.55 27.61 7.72 86.67 0.67 28.28 16 13 O -0.58 -34.88 13.54 -4.08 -0.06 -34.93 16 14 C -0.26 -12.95 5.92 -19.70 -0.12 -13.06 16 15 C -0.04 -1.52 9.52 22.50 0.21 -1.30 16 16 C -0.23 -8.00 10.03 22.41 0.22 -7.77 16 17 C -0.06 -2.30 10.01 22.26 0.22 -2.08 16 18 C -0.25 -11.60 7.00 22.72 0.16 -11.44 16 19 C 0.10 5.46 5.03 -21.11 -0.11 5.36 16 20 C -0.45 -27.99 8.31 23.41 0.19 -27.80 16 21 H 0.07 5.00 5.96 -2.91 -0.02 4.99 16 22 C 0.03 2.03 5.47 85.37 0.47 2.50 16 23 N -0.85 -50.81 13.92 21.88 0.30 -50.51 16 24 Si 0.97 44.72 24.52 68.60 1.68 46.40 16 25 H -0.25 -10.32 6.76 99.48 0.67 -9.64 16 26 H -0.25 -11.59 6.73 99.48 0.67 -10.92 16 27 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 28 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.07 0.89 7.66 -2.39 -0.02 0.87 16 30 H 0.07 0.91 7.66 -2.38 -0.02 0.89 16 31 H 0.15 1.99 6.30 -2.91 -0.02 1.97 16 32 H 0.08 0.62 8.14 -2.38 -0.02 0.61 16 33 H 0.08 0.58 8.09 -2.39 -0.02 0.56 16 34 H 0.08 0.56 8.08 -2.38 -0.02 0.54 16 35 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 36 H 0.14 2.82 8.03 -2.91 -0.02 2.79 16 37 H 0.05 1.88 7.85 -2.39 -0.02 1.86 16 38 H 0.06 2.14 8.00 -2.39 -0.02 2.12 16 39 H 0.40 13.11 6.51 -92.71 -0.60 12.51 16 40 H 0.13 4.00 6.42 -2.91 -0.02 3.98 16 41 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 42 H 0.14 4.14 8.06 -2.91 -0.02 4.11 16 43 H 0.10 4.81 5.01 -2.91 -0.01 4.80 16 44 H 0.29 15.61 8.29 -92.71 -0.77 14.84 16 Total: -1.00 -78.83 362.30 3.59 -75.24 By element: Atomic # 1 Polarization: 32.11 SS G_CDS: 0.36 Total: 32.47 kcal Atomic # 6 Polarization: -33.46 SS G_CDS: 4.78 Total: -28.68 kcal Atomic # 7 Polarization: -78.31 SS G_CDS: -2.28 Total: -80.59 kcal Atomic # 8 Polarization: -43.88 SS G_CDS: -0.95 Total: -44.84 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.68 Total: 46.40 kcal Total: -78.83 3.59 -75.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412646225.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.850 kcal (2) G-P(sol) polarization free energy of solvation -78.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds