Wall clock time and date at job start Tue Mar 31 2020 13:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35903 * 117.00045 * 2 1 4 4 C 1.38751 * 120.05290 * 0.02562 * 3 2 1 5 5 C 1.38129 * 119.94206 * 179.97438 * 4 3 2 6 6 C 1.38281 * 120.05481 * 0.02562 * 5 4 3 7 7 C 1.38253 * 120.11471 * 359.96124 * 6 5 4 8 8 C 1.50700 * 119.97429 * 180.02562 * 7 6 5 9 9 N 1.46497 * 109.46932 * 259.99596 * 8 7 6 10 10 C 1.34774 * 120.00234 * 179.97438 * 9 8 7 11 11 O 1.21618 * 119.99610 * 359.97438 * 10 9 8 12 12 C 1.47428 * 120.00477 * 180.02562 * 10 9 8 13 13 C 1.39232 * 120.28289 * 357.04276 * 12 10 9 14 14 C 1.38215 * 120.09334 * 180.27999 * 13 12 10 15 15 C 1.38826 * 120.67954 * 359.72191 * 14 13 12 16 16 C 1.37600 * 120.56680 * 359.97438 * 15 14 13 17 17 C 1.40710 * 119.88409 * 0.02562 * 16 15 14 18 18 C 1.40884 * 120.33171 * 179.97438 * 17 16 15 19 19 H 1.07999 * 120.00047 * 145.84502 * 18 17 16 20 20 C 1.40271 * 120.00279 * 325.85899 * 18 17 16 21 21 N 1.30633 * 119.99844 * 340.93457 * 20 18 17 22 22 Si 1.86802 * 120.00464 * 160.93656 * 20 18 17 23 23 H 1.48499 * 109.47065 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.46812 * 299.99954 * 22 20 18 25 25 H 1.48504 * 109.46620 * 59.99841 * 22 20 18 26 26 C 1.38164 * 120.05103 * 0.28668 * 7 6 5 27 27 C 1.50700 * 120.02793 * 179.72482 * 26 7 6 28 28 H 1.09000 * 109.47605 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47360 * 299.99656 * 1 2 3 30 30 H 1.09000 * 109.47700 * 59.99911 * 1 2 3 31 31 H 1.07997 * 120.03126 * 0.02562 * 4 3 2 32 32 H 1.07994 * 119.96919 * 180.02562 * 5 4 3 33 33 H 1.07997 * 119.94602 * 179.97438 * 6 5 4 34 34 H 1.08997 * 109.47118 * 139.99563 * 8 7 6 35 35 H 1.09003 * 109.46911 * 19.99258 * 8 7 6 36 36 H 0.97004 * 120.00040 * 0.02562 * 9 8 7 37 37 H 1.07999 * 119.94843 * 0.02562 * 13 12 10 38 38 H 1.08006 * 119.66169 * 179.73705 * 14 13 12 39 39 H 1.07994 * 119.72040 * 180.02562 * 15 14 13 40 40 H 1.07997 * 120.05928 * 180.02562 * 16 15 14 41 41 H 0.97004 * 119.99909 * 354.76100 * 21 20 18 42 42 H 1.09000 * 109.46672 * 90.00205 * 27 26 7 43 43 H 1.08998 * 109.47594 * 210.00615 * 27 26 7 44 44 H 1.09006 * 109.47352 * 330.01001 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6048 0.0011 6 6 3.3018 3.6758 0.0005 7 6 4.0560 2.5171 0.0003 8 6 5.5608 2.5981 0.0003 9 7 6.0612 2.3851 -1.3600 10 6 7.3866 2.4142 -1.6027 11 8 8.1671 2.6178 -0.6925 12 6 7.8903 2.2004 -2.9717 13 6 7.0068 1.9071 -4.0070 14 6 7.4839 1.7017 -5.2879 15 6 8.8422 1.7899 -5.5605 16 6 9.7391 2.0844 -4.5594 17 6 9.2795 2.2980 -3.2467 18 6 10.1896 2.5995 -2.2144 19 1 9.8991 3.2665 -1.4162 20 6 11.4730 2.0336 -2.2234 21 7 11.7124 0.9689 -2.9415 22 14 12.8400 2.8024 -1.2085 23 1 14.0897 2.0208 -1.3887 24 1 13.0615 4.2010 -1.6554 25 1 12.4550 2.7959 0.2258 26 6 3.4311 1.2848 -0.0054 27 6 4.2536 0.0221 -0.0120 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 0.2128 2.3203 0.0014 32 1 1.3339 4.5113 0.0019 33 1 3.7921 4.6380 0.0005 34 1 5.9659 1.8315 0.6607 35 1 5.8716 3.5820 0.3519 36 1 5.4386 2.2238 -2.0862 37 1 5.9477 1.8359 -3.8081 38 1 6.7927 1.4703 -6.0849 39 1 9.1980 1.6269 -6.5670 40 1 10.7941 2.1514 -4.7807 41 1 10.9867 0.5253 -3.4079 42 1 4.4524 -0.2872 1.0141 43 1 3.7061 -0.7656 -0.5295 44 1 5.1976 0.2060 -0.5252 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001453868776.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:01 Heat of formation + Delta-G solvation = -37.834674 kcal Electronic energy + Delta-G solvation = -26684.784911 eV Core-core repulsion = 22952.621373 eV Total energy + Delta-G solvation = -3732.163538 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.53038 -39.04631 -37.90196 -36.85353 -34.45186 -33.83553 -32.60957 -30.90794 -29.80783 -29.26734 -27.83262 -27.05889 -25.80608 -24.87185 -22.30314 -21.90041 -21.07035 -20.66444 -19.49516 -18.21782 -17.74306 -16.65421 -16.35412 -16.01014 -15.78811 -15.28840 -14.74685 -14.60544 -14.19859 -14.03525 -13.85197 -13.70781 -13.50187 -13.44696 -12.95998 -12.59785 -12.40440 -12.23995 -12.16483 -12.10802 -12.04956 -11.64404 -11.36428 -11.24963 -11.11287 -10.89419 -10.83792 -10.72867 -10.35124 -10.14899 -9.61210 -9.06602 -8.96400 -8.43547 -8.38772 -8.25713 -7.77239 -7.58773 -7.12643 -4.44557 1.09018 1.30107 2.25811 2.75672 3.05601 3.21965 3.32714 3.42519 3.48266 4.05606 4.08611 4.16900 4.58340 4.60022 4.66036 4.83148 4.85951 4.87298 5.08796 5.15520 5.23362 5.29120 5.48146 5.61571 5.71044 5.75727 5.81095 5.86403 5.90467 6.08852 6.17789 6.21801 6.26446 6.31171 6.52291 6.53498 6.63428 6.73546 7.00558 7.08957 7.21006 7.29667 7.51267 7.62485 7.74168 7.90591 8.10825 8.22919 8.38579 8.74976 8.87799 9.36542 10.06064 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017118 B = 0.003015 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.298369 B = 9285.802447 C = 9951.978977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.314 6.314 3 C 0.120 3.880 4 C -0.203 4.203 5 C -0.090 4.090 6 C -0.134 4.134 7 C -0.064 4.064 8 C 0.166 3.834 9 N -0.743 5.743 10 C 0.564 3.436 11 O -0.536 6.536 12 C -0.264 4.264 13 C -0.042 4.042 14 C -0.260 4.260 15 C -0.075 4.075 16 C -0.201 4.201 17 C 0.121 3.879 18 C -0.466 4.466 19 H 0.106 0.894 20 C 0.031 3.969 21 N -0.794 5.794 22 Si 1.070 2.930 23 H -0.275 1.275 24 H -0.274 1.274 25 H -0.272 1.272 26 C -0.095 4.095 27 C -0.114 4.114 28 H 0.098 0.902 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.126 0.874 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.393 0.607 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.107 0.893 41 H 0.298 0.702 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.866 0.761 4.807 19.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.227 6.227 3 C 0.075 3.925 4 C -0.222 4.222 5 C -0.108 4.108 6 C -0.153 4.153 7 C -0.065 4.065 8 C 0.042 3.958 9 N -0.398 5.398 10 C 0.358 3.642 11 O -0.415 6.415 12 C -0.269 4.269 13 C -0.061 4.061 14 C -0.279 4.279 15 C -0.094 4.094 16 C -0.220 4.220 17 C 0.117 3.883 18 C -0.493 4.493 19 H 0.123 0.877 20 C -0.191 4.191 21 N -0.417 5.417 22 Si 0.893 3.107 23 H -0.200 1.200 24 H -0.200 1.200 25 H -0.198 1.198 26 C -0.096 4.096 27 C -0.170 4.170 28 H 0.117 0.883 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.144 0.856 32 H 0.142 0.858 33 H 0.144 0.856 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.227 0.773 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.125 0.875 41 H 0.112 0.888 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.557 0.534 5.825 17.560 hybrid contribution -2.591 0.139 -0.893 2.744 sum -19.148 0.674 4.931 19.784 Atomic orbital electron populations 1.23035 0.78674 1.03829 1.01193 1.86078 1.21035 1.26807 1.88780 1.18797 0.91699 0.84202 0.97772 1.21204 0.99802 0.92412 1.08774 1.20878 0.94487 0.96922 0.98535 1.21034 0.93653 0.98108 1.02470 1.19744 0.95579 0.91947 0.99184 1.19987 0.87493 1.02247 0.86082 1.46055 1.07883 1.77116 1.08774 1.18391 0.80411 0.75966 0.89427 1.90683 1.54962 1.49307 1.46535 1.19372 0.94985 1.21386 0.91183 1.20720 0.96383 0.95889 0.93141 1.20239 0.94986 1.16623 0.96044 1.20740 0.93540 0.97818 0.97333 1.21253 0.98569 1.09405 0.92816 1.17499 0.90718 0.87771 0.92356 1.21180 0.96894 1.23138 1.08086 0.87660 1.27266 1.00498 0.94770 0.96523 1.70389 1.38761 1.13168 1.19411 0.83562 0.74465 0.76328 0.76304 1.19970 1.19973 1.19772 1.19182 0.90468 0.95928 1.04067 1.20732 0.99675 0.94083 1.02558 0.88326 0.92805 0.92748 0.85635 0.85773 0.85557 0.90913 0.91134 0.77279 0.89164 0.88943 0.88909 0.87536 0.88793 0.91272 0.91206 0.90474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.51 9.55 -19.44 -0.19 -3.69 16 3 C 0.12 1.45 6.66 -39.22 -0.26 1.19 16 4 C -0.20 -2.09 9.04 -39.43 -0.36 -2.44 16 5 C -0.09 -0.92 10.04 -39.61 -0.40 -1.32 16 6 C -0.13 -1.57 9.67 -39.56 -0.38 -1.95 16 7 C -0.06 -0.85 5.25 -104.64 -0.55 -1.40 16 8 C 0.17 2.58 4.93 -5.20 -0.03 2.56 16 9 N -0.74 -13.30 4.81 -62.56 -0.30 -13.60 16 10 C 0.56 13.02 7.73 -12.52 -0.10 12.92 16 11 O -0.54 -14.10 13.55 5.26 0.07 -14.03 16 12 C -0.26 -6.44 5.92 -104.37 -0.62 -7.05 16 13 C -0.04 -0.90 9.53 -39.22 -0.37 -1.28 16 14 C -0.26 -5.48 10.03 -39.37 -0.39 -5.88 16 15 C -0.08 -1.68 10.01 -39.60 -0.40 -2.07 16 16 C -0.20 -5.03 7.86 -38.88 -0.31 -5.34 16 17 C 0.12 3.23 5.18 -106.54 -0.55 2.68 16 18 C -0.47 -12.83 7.66 -37.82 -0.29 -13.12 16 19 H 0.11 3.02 5.91 -52.49 -0.31 2.71 16 20 C 0.03 0.81 5.04 -17.30 -0.09 0.72 16 21 N -0.79 -21.35 12.57 55.56 0.70 -20.65 16 22 Si 1.07 22.62 29.98 -169.99 -5.10 17.53 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 24 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 25 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 26 C -0.10 -1.26 5.89 -104.47 -0.62 -1.87 16 27 C -0.11 -1.50 9.04 36.01 0.33 -1.17 16 28 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 30 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 31 H 0.13 0.97 6.30 -52.49 -0.33 0.64 16 32 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 33 H 0.13 1.34 8.03 -52.49 -0.42 0.92 16 34 H 0.07 1.19 7.30 -51.93 -0.38 0.81 16 35 H 0.07 1.11 8.00 -51.93 -0.42 0.70 16 36 H 0.39 6.38 6.50 -40.82 -0.27 6.12 16 37 H 0.09 1.62 6.41 -52.49 -0.34 1.28 16 38 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 39 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 40 H 0.11 2.71 6.93 -52.49 -0.36 2.35 16 41 H 0.30 8.20 6.54 -40.82 -0.27 7.94 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.07 0.88 7.54 -51.93 -0.39 0.49 16 44 H 0.08 1.13 6.33 -51.93 -0.33 0.80 16 LS Contribution 362.64 15.07 5.46 5.46 Total: -1.00 -30.75 362.64 -9.25 -39.99 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -5.52 Total: 12.64 kcal Atomic # 6 Polarization: -19.26 SS G_CDS: -4.38 Total: -23.65 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: 0.40 Total: -34.26 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.11 Total: -17.72 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.10 Total: 17.53 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.75 -9.25 -39.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001453868776.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.160 kcal (2) G-P(sol) polarization free energy of solvation -30.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds