Wall clock time and date at job start Tue Mar 31 2020 13:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35903 * 117.00045 * 2 1 4 4 C 1.38751 * 120.05290 * 0.02562 * 3 2 1 5 5 C 1.38129 * 119.94206 * 179.97438 * 4 3 2 6 6 C 1.38281 * 120.05481 * 0.02562 * 5 4 3 7 7 C 1.38253 * 120.11471 * 359.96124 * 6 5 4 8 8 C 1.50700 * 119.97429 * 180.02562 * 7 6 5 9 9 N 1.46497 * 109.46932 * 259.99596 * 8 7 6 10 10 C 1.34774 * 120.00234 * 179.97438 * 9 8 7 11 11 O 1.21618 * 119.99610 * 359.97438 * 10 9 8 12 12 C 1.47428 * 120.00477 * 180.02562 * 10 9 8 13 13 C 1.39232 * 120.28289 * 357.04276 * 12 10 9 14 14 C 1.38215 * 120.09334 * 180.27999 * 13 12 10 15 15 C 1.38826 * 120.67954 * 359.72191 * 14 13 12 16 16 C 1.37600 * 120.56680 * 359.97438 * 15 14 13 17 17 C 1.40710 * 119.88409 * 0.02562 * 16 15 14 18 18 C 1.40884 * 120.33171 * 179.97438 * 17 16 15 19 19 H 1.07999 * 120.00047 * 145.84502 * 18 17 16 20 20 C 1.40271 * 120.00279 * 325.85899 * 18 17 16 21 21 N 1.30633 * 119.99844 * 340.93457 * 20 18 17 22 22 Si 1.86802 * 120.00464 * 160.93656 * 20 18 17 23 23 H 1.48499 * 109.47065 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.46812 * 299.99954 * 22 20 18 25 25 H 1.48504 * 109.46620 * 59.99841 * 22 20 18 26 26 C 1.38164 * 120.05103 * 0.28668 * 7 6 5 27 27 C 1.50700 * 120.02793 * 179.72482 * 26 7 6 28 28 H 1.09000 * 109.47605 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47360 * 299.99656 * 1 2 3 30 30 H 1.09000 * 109.47700 * 59.99911 * 1 2 3 31 31 H 1.07997 * 120.03126 * 0.02562 * 4 3 2 32 32 H 1.07994 * 119.96919 * 180.02562 * 5 4 3 33 33 H 1.07997 * 119.94602 * 179.97438 * 6 5 4 34 34 H 1.08997 * 109.47118 * 139.99563 * 8 7 6 35 35 H 1.09003 * 109.46911 * 19.99258 * 8 7 6 36 36 H 0.97004 * 120.00040 * 0.02562 * 9 8 7 37 37 H 1.07999 * 119.94843 * 0.02562 * 13 12 10 38 38 H 1.08006 * 119.66169 * 179.73705 * 14 13 12 39 39 H 1.07994 * 119.72040 * 180.02562 * 15 14 13 40 40 H 1.07997 * 120.05928 * 180.02562 * 16 15 14 41 41 H 0.97004 * 119.99909 * 354.76100 * 21 20 18 42 42 H 1.09000 * 109.46672 * 90.00205 * 27 26 7 43 43 H 1.08998 * 109.47594 * 210.00615 * 27 26 7 44 44 H 1.09006 * 109.47352 * 330.01001 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6048 0.0011 6 6 3.3018 3.6758 0.0005 7 6 4.0560 2.5171 0.0003 8 6 5.5608 2.5981 0.0003 9 7 6.0612 2.3851 -1.3600 10 6 7.3866 2.4142 -1.6027 11 8 8.1671 2.6178 -0.6925 12 6 7.8903 2.2004 -2.9717 13 6 7.0068 1.9071 -4.0070 14 6 7.4839 1.7017 -5.2879 15 6 8.8422 1.7899 -5.5605 16 6 9.7391 2.0844 -4.5594 17 6 9.2795 2.2980 -3.2467 18 6 10.1896 2.5995 -2.2144 19 1 9.8991 3.2665 -1.4162 20 6 11.4730 2.0336 -2.2234 21 7 11.7124 0.9689 -2.9415 22 14 12.8400 2.8024 -1.2085 23 1 14.0897 2.0208 -1.3887 24 1 13.0615 4.2010 -1.6554 25 1 12.4550 2.7959 0.2258 26 6 3.4311 1.2848 -0.0054 27 6 4.2536 0.0221 -0.0120 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 0.2128 2.3203 0.0014 32 1 1.3339 4.5113 0.0019 33 1 3.7921 4.6380 0.0005 34 1 5.9659 1.8315 0.6607 35 1 5.8716 3.5820 0.3519 36 1 5.4386 2.2238 -2.0862 37 1 5.9477 1.8359 -3.8081 38 1 6.7927 1.4703 -6.0849 39 1 9.1980 1.6269 -6.5670 40 1 10.7941 2.1514 -4.7807 41 1 10.9867 0.5253 -3.4079 42 1 4.4524 -0.2872 1.0141 43 1 3.7061 -0.7656 -0.5295 44 1 5.1976 0.2060 -0.5252 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001453868776.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:01 Heat of formation + Delta-G solvation = -54.998069 kcal Electronic energy + Delta-G solvation = -26685.529171 eV Core-core repulsion = 22952.621373 eV Total energy + Delta-G solvation = -3732.907799 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.45810 -40.71040 -39.07346 -38.43488 -36.06644 -35.49874 -33.71529 -32.27557 -31.46671 -30.94979 -28.49490 -28.11601 -27.26533 -26.43122 -24.01883 -22.83909 -22.73586 -21.79784 -21.22647 -19.97728 -18.81111 -17.94578 -17.55295 -16.99007 -16.65207 -16.62748 -16.51135 -16.01574 -15.80203 -15.68987 -15.44757 -14.92193 -14.65107 -14.49972 -14.33266 -14.01459 -13.86503 -13.83474 -13.41348 -13.24545 -13.03931 -12.90153 -12.78538 -12.69363 -12.49553 -12.27702 -12.03433 -11.98178 -11.94101 -11.71723 -11.45188 -10.95937 -10.44372 -10.03418 -9.75477 -9.60671 -9.48984 -9.11976 -9.09294 -6.45692 0.17043 0.40062 0.42586 0.90823 1.47270 1.62748 1.77500 2.24911 2.31704 2.32953 2.38817 2.74976 2.86606 3.56405 3.61190 3.78921 4.01738 4.10899 4.17341 4.21663 4.26727 4.32851 4.41340 4.43625 4.46979 4.62973 4.68986 4.71422 4.72752 4.75727 4.82928 4.85806 4.88057 5.14008 5.23500 5.34271 5.42526 5.44241 5.51712 5.59274 5.65709 5.71049 5.77171 5.89656 5.96965 6.20341 6.33507 6.44095 6.67524 6.85213 6.92144 7.58699 8.05105 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017118 B = 0.003015 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.298369 B = 9285.802447 C = 9951.978977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.333 6.333 3 C 0.114 3.886 4 C -0.196 4.196 5 C -0.083 4.083 6 C -0.141 4.141 7 C -0.075 4.075 8 C 0.169 3.831 9 N -0.720 5.720 10 C 0.559 3.441 11 O -0.577 6.577 12 C -0.282 4.282 13 C -0.041 4.041 14 C -0.244 4.244 15 C -0.071 4.071 16 C -0.225 4.225 17 C 0.096 3.904 18 C -0.509 4.509 19 H 0.082 0.918 20 C -0.003 4.003 21 N -0.817 5.817 22 Si 1.115 2.885 23 H -0.265 1.265 24 H -0.259 1.259 25 H -0.271 1.271 26 C -0.114 4.114 27 C -0.108 4.108 28 H 0.115 0.885 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.156 0.844 32 H 0.156 0.844 33 H 0.134 0.866 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.403 0.597 37 H 0.129 0.871 38 H 0.135 0.865 39 H 0.125 0.875 40 H 0.090 0.910 41 H 0.283 0.717 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.588 1.218 3.882 22.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.247 6.247 3 C 0.068 3.932 4 C -0.214 4.214 5 C -0.101 4.101 6 C -0.159 4.159 7 C -0.075 4.075 8 C 0.046 3.954 9 N -0.374 5.374 10 C 0.353 3.647 11 O -0.458 6.458 12 C -0.286 4.286 13 C -0.060 4.060 14 C -0.263 4.263 15 C -0.090 4.090 16 C -0.245 4.245 17 C 0.092 3.908 18 C -0.537 4.537 19 H 0.100 0.900 20 C -0.218 4.218 21 N -0.442 5.442 22 Si 0.933 3.067 23 H -0.189 1.189 24 H -0.183 1.183 25 H -0.197 1.197 26 C -0.116 4.116 27 C -0.164 4.164 28 H 0.133 0.867 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.173 0.827 32 H 0.174 0.826 33 H 0.152 0.848 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.240 0.760 37 H 0.147 0.853 38 H 0.153 0.847 39 H 0.143 0.857 40 H 0.108 0.892 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -20.349 0.986 4.875 20.948 hybrid contribution -1.826 -0.047 -0.699 1.956 sum -22.175 0.940 4.177 22.585 Atomic orbital electron populations 1.23348 0.76435 1.05484 1.02359 1.86056 1.23386 1.26602 1.88636 1.18897 0.91369 0.85287 0.97613 1.21569 1.01293 0.91634 1.06948 1.21236 0.93860 0.98225 0.96800 1.21203 0.94620 0.97729 1.02397 1.19471 0.93680 0.92951 1.01415 1.19988 0.89628 1.01481 0.84261 1.45798 1.06207 1.75128 1.10291 1.18419 0.81773 0.75747 0.88786 1.90662 1.56499 1.51186 1.47482 1.19769 0.94948 1.21061 0.92858 1.21109 0.97932 0.94445 0.92526 1.20790 0.95087 1.13526 0.96927 1.21149 0.93867 0.95871 0.98086 1.21217 0.98532 1.11532 0.93174 1.17891 0.91992 0.87904 0.92969 1.21112 0.98606 1.25319 1.08687 0.90006 1.28475 1.02302 0.94297 0.96745 1.70500 1.37868 1.14167 1.21620 0.83027 0.72309 0.76464 0.74918 1.18886 1.18313 1.19651 1.19199 0.91471 0.95456 1.05436 1.20627 0.98750 0.94715 1.02356 0.86668 0.91492 0.91564 0.82664 0.82648 0.84810 0.92233 0.91494 0.76017 0.85319 0.84700 0.85713 0.89163 0.90498 0.91241 0.90891 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.33 -6.70 9.55 -92.46 -0.88 -7.58 16 3 C 0.11 2.48 6.66 22.51 0.15 2.63 16 4 C -0.20 -3.29 9.04 22.37 0.20 -3.09 16 5 C -0.08 -1.39 10.04 22.25 0.22 -1.17 16 6 C -0.14 -2.99 9.67 22.28 0.22 -2.78 16 7 C -0.07 -1.92 5.25 -19.88 -0.10 -2.02 16 8 C 0.17 5.39 4.93 85.63 0.42 5.82 16 9 N -0.72 -25.90 4.81 -470.10 -2.26 -28.16 16 10 C 0.56 26.64 7.73 86.66 0.67 27.31 16 11 O -0.58 -32.05 13.55 -4.09 -0.06 -32.11 16 12 C -0.28 -13.90 5.92 -19.70 -0.12 -14.01 16 13 C -0.04 -1.68 9.53 22.50 0.21 -1.46 16 14 C -0.24 -9.48 10.03 22.41 0.22 -9.25 16 15 C -0.07 -3.04 10.01 22.26 0.22 -2.82 16 16 C -0.23 -11.54 7.86 22.72 0.18 -11.36 16 17 C 0.10 5.35 5.18 -21.11 -0.11 5.24 16 18 C -0.51 -29.80 7.66 23.41 0.18 -29.62 16 19 H 0.08 5.05 5.91 -2.91 -0.02 5.04 16 20 C 0.00 -0.16 5.04 85.37 0.43 0.27 16 21 N -0.82 -46.26 12.57 21.88 0.27 -45.99 16 22 Si 1.12 47.71 29.98 68.60 2.06 49.76 16 23 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 24 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 25 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 26 C -0.11 -2.91 5.89 -19.77 -0.12 -3.03 16 27 C -0.11 -2.85 9.04 71.24 0.64 -2.21 16 28 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 0.53 7.66 -2.38 -0.02 0.51 16 30 H 0.07 0.54 7.66 -2.39 -0.02 0.53 16 31 H 0.16 1.64 6.30 -2.91 -0.02 1.62 16 32 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 33 H 0.13 2.58 8.03 -2.91 -0.02 2.56 16 34 H 0.06 2.05 7.30 -2.39 -0.02 2.03 16 35 H 0.07 2.17 8.00 -2.39 -0.02 2.15 16 36 H 0.40 12.61 6.50 -92.71 -0.60 12.01 16 37 H 0.13 4.15 6.41 -2.91 -0.02 4.13 16 38 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 39 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 40 H 0.09 4.83 6.93 -2.91 -0.02 4.81 16 41 H 0.28 16.48 6.54 -92.71 -0.61 15.87 16 42 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.07 1.82 7.54 -2.39 -0.02 1.81 16 44 H 0.06 1.68 6.33 -2.38 -0.02 1.66 16 Total: -1.00 -71.51 362.64 4.37 -67.14 By element: Atomic # 1 Polarization: 36.59 SS G_CDS: 0.60 Total: 37.19 kcal Atomic # 6 Polarization: -44.90 SS G_CDS: 4.64 Total: -40.26 kcal Atomic # 7 Polarization: -72.16 SS G_CDS: -1.99 Total: -74.15 kcal Atomic # 8 Polarization: -38.75 SS G_CDS: -0.94 Total: -39.69 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 2.06 Total: 49.76 kcal Total: -71.51 4.37 -67.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001453868776.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.144 kcal (2) G-P(sol) polarization free energy of solvation -71.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds