Wall clock time and date at job start Tue Mar 31 2020 13:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38287 * 119.97256 * 2 1 4 4 C 1.38248 * 120.11001 * 179.97438 * 3 2 1 5 5 C 1.38170 * 120.05461 * 0.02562 * 4 3 2 6 6 C 1.38707 * 119.94593 * 359.97438 * 5 4 3 7 7 O 1.35896 * 120.05759 * 180.02562 * 6 5 4 8 8 C 1.42898 * 117.00371 * 178.36920 * 7 6 5 9 9 H 1.09001 * 109.46924 * 37.15650 * 8 7 6 10 10 C 1.52996 * 109.46964 * 277.15418 * 8 7 6 11 11 C 1.50695 * 109.47271 * 157.15414 * 8 7 6 12 12 O 1.21293 * 119.99954 * 5.00013 * 11 8 7 13 13 N 1.34776 * 120.00325 * 185.00089 * 11 8 7 14 14 C 1.39937 * 120.00658 * 174.80923 * 13 11 8 15 15 C 1.39287 * 119.95257 * 215.63685 * 14 13 11 16 16 C 1.38477 * 120.43229 * 179.71902 * 15 14 13 17 17 C 1.37684 * 120.32091 * 0.55435 * 16 15 14 18 18 C 1.40745 * 119.88381 * 359.72079 * 17 16 15 19 19 C 1.41412 * 120.21067 * 180.02562 * 18 17 16 20 20 H 1.07997 * 119.99726 * 147.53679 * 19 18 17 21 21 C 1.39930 * 120.00107 * 327.53631 * 19 18 17 22 22 N 1.30828 * 120.00263 * 168.73803 * 21 19 18 23 23 Si 1.86805 * 119.99892 * 348.73957 * 21 19 18 24 24 H 1.48498 * 109.47400 * 89.15411 * 23 21 19 25 25 H 1.48504 * 109.47032 * 209.15694 * 23 21 19 26 26 H 1.48499 * 109.47030 * 329.15279 * 23 21 19 27 27 C 1.38242 * 119.94320 * 35.90809 * 14 13 11 28 28 C 1.38122 * 119.96982 * 180.29925 * 2 1 3 29 29 H 1.09005 * 109.47238 * 89.99976 * 1 2 3 30 30 H 1.09000 * 109.47315 * 210.00386 * 1 2 3 31 31 H 1.09001 * 109.47038 * 330.00283 * 1 2 3 32 32 H 1.07992 * 119.94418 * 0.02562 * 3 2 1 33 33 H 1.07995 * 119.97213 * 179.97438 * 4 3 2 34 34 H 1.07997 * 120.02529 * 179.97438 * 5 4 3 35 35 H 1.08997 * 109.47150 * 179.97438 * 10 8 7 36 36 H 1.09001 * 109.47490 * 299.99885 * 10 8 7 37 37 H 1.08997 * 109.47077 * 60.00144 * 10 8 7 38 38 H 0.97005 * 119.99637 * 354.53528 * 13 11 8 39 39 H 1.08007 * 119.77935 * 359.97438 * 15 14 13 40 40 H 1.07997 * 119.84600 * 180.27844 * 16 15 14 41 41 H 1.08002 * 120.06226 * 179.74904 * 17 16 15 42 42 H 0.96997 * 120.00110 * 180.02562 * 22 21 19 43 43 H 1.08001 * 120.16252 * 359.97438 * 27 14 13 44 44 H 1.08001 * 120.03191 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1979 0.0000 4 6 3.5803 1.2012 0.0005 5 6 4.2752 0.0070 0.0005 6 6 3.5845 -1.1959 0.0005 7 8 4.2657 -2.3719 0.0011 8 6 3.4896 -3.5712 0.0373 9 1 2.5898 -3.4399 -0.5638 10 6 3.0965 -3.8808 1.4831 11 6 4.3023 -4.7124 -0.5177 12 8 5.4636 -4.5384 -0.8216 13 7 3.7388 -5.9264 -0.6765 14 6 4.4585 -6.9569 -1.2917 15 6 3.8002 -7.8736 -2.1080 16 6 4.5035 -8.8938 -2.7262 17 6 5.8606 -9.0198 -2.5315 18 6 6.5384 -8.1042 -1.7048 19 6 7.9323 -8.2268 -1.5003 20 1 8.5355 -7.3439 -1.3491 21 6 8.5299 -9.4920 -1.4940 22 7 9.8333 -9.6000 -1.5267 23 14 7.4666 -11.0270 -1.4389 24 1 7.1308 -11.4465 -2.8233 25 1 8.2078 -12.1183 -0.7570 26 1 6.2161 -10.7363 -0.6926 27 6 5.8207 -7.0667 -1.0838 28 6 2.1970 -1.1965 -0.0062 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6565 2.1324 0.0004 33 1 4.1176 2.1381 0.0001 34 1 5.3551 0.0101 0.0005 35 1 2.5042 -4.7953 1.5107 36 1 3.9963 -4.0121 2.0841 37 1 2.5087 -3.0554 1.8845 38 1 2.8358 -6.0869 -0.3608 39 1 2.7349 -7.7858 -2.2629 40 1 3.9843 -9.5967 -3.3608 41 1 6.4043 -9.8194 -3.0125 42 1 10.2476 -10.4771 -1.5227 43 1 6.3314 -6.3587 -0.4479 44 1 1.6570 -2.1318 -0.0116 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001460156836.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:02 Heat of formation + Delta-G solvation = -25.548333 kcal Electronic energy + Delta-G solvation = -26234.096896 eV Core-core repulsion = 22502.466134 eV Total energy + Delta-G solvation = -3731.630762 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.81635 -39.68248 -38.00564 -37.15368 -34.59250 -33.38375 -33.06093 -31.85035 -30.32565 -30.11308 -28.59017 -27.19518 -25.26769 -24.93325 -22.95873 -21.79043 -21.46556 -20.87443 -19.77819 -18.23846 -17.91577 -17.11458 -16.27026 -15.98439 -15.81148 -15.75014 -15.30033 -14.64943 -14.53703 -14.43988 -14.14514 -13.88316 -13.47652 -13.43305 -13.28084 -12.76471 -12.73225 -12.61439 -12.52125 -12.33955 -12.02458 -11.90034 -11.69994 -11.56260 -11.23474 -11.12689 -11.07990 -10.90296 -10.53219 -9.84822 -9.82592 -9.50606 -9.30248 -9.05588 -8.98200 -8.34194 -7.66797 -7.22484 -6.87104 -4.46931 1.09351 1.23315 2.27933 2.58461 2.60907 2.97890 3.13214 3.23918 3.33124 3.52587 3.63926 4.00952 4.38913 4.49727 4.51541 4.58982 4.64893 4.73917 4.84203 5.02832 5.11741 5.21561 5.27183 5.32040 5.39524 5.42051 5.46251 5.51384 5.81346 5.85237 5.95256 6.10270 6.14416 6.21671 6.34355 6.36486 6.55169 6.57197 6.71134 6.79564 7.16315 7.19287 7.30863 7.48399 7.57879 7.90062 7.92095 8.03258 8.40172 8.49328 8.66481 8.83757 10.15703 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.024935 B = 0.002509 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.646066 B =11158.935490 C =11846.931672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.048 4.048 3 C -0.164 4.164 4 C -0.076 4.076 5 C -0.156 4.156 6 C 0.139 3.861 7 O -0.281 6.281 8 C 0.069 3.931 9 H 0.098 0.902 10 C -0.176 4.176 11 C 0.509 3.491 12 O -0.487 6.487 13 N -0.664 5.664 14 C 0.159 3.841 15 C -0.261 4.261 16 C -0.065 4.065 17 C -0.249 4.249 18 C 0.102 3.898 19 C -0.441 4.441 20 H 0.092 0.908 21 C 0.080 3.920 22 N -0.814 5.814 23 Si 0.919 3.081 24 H -0.270 1.270 25 H -0.294 1.294 26 H -0.246 1.246 27 C -0.193 4.193 28 C -0.215 4.215 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.121 0.879 33 H 0.129 0.871 34 H 0.132 0.868 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.400 0.600 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.285 0.715 43 H 0.119 0.881 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.859 14.946 5.225 24.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.048 4.048 3 C -0.182 4.182 4 C -0.094 4.094 5 C -0.174 4.174 6 C 0.093 3.907 7 O -0.193 6.193 8 C 0.008 3.992 9 H 0.115 0.885 10 C -0.234 4.234 11 C 0.293 3.707 12 O -0.359 6.359 13 N -0.310 5.310 14 C 0.067 3.933 15 C -0.282 4.282 16 C -0.084 4.084 17 C -0.269 4.269 18 C 0.098 3.902 19 C -0.470 4.470 20 H 0.110 0.890 21 C -0.138 4.138 22 N -0.439 5.439 23 Si 0.746 3.254 24 H -0.196 1.196 25 H -0.222 1.222 26 H -0.169 1.169 27 C -0.214 4.214 28 C -0.234 4.234 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.139 0.861 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.235 0.765 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.121 0.879 42 H 0.095 0.905 43 H 0.137 0.863 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.516 14.982 5.014 23.588 hybrid contribution -0.962 -0.874 0.065 1.301 sum -18.478 14.108 5.079 23.796 Atomic orbital electron populations 1.20823 0.91054 1.02864 1.02530 1.19690 0.95944 0.92490 0.96696 1.20925 0.94230 0.97423 1.05604 1.20952 0.94077 0.97210 0.97150 1.20485 1.00788 0.89603 1.06551 1.19085 0.90537 0.86012 0.95047 1.86257 1.34137 1.11153 1.87795 1.22195 0.94367 0.83986 0.98602 0.88482 1.22332 1.03464 1.03156 0.94423 1.20006 0.88108 0.83162 0.79451 1.90816 1.15866 1.82487 1.46734 1.43244 1.18175 1.09755 1.59846 1.17487 0.91913 0.88375 0.95539 1.20059 0.98104 1.02075 1.07937 1.20371 0.94036 0.96379 0.97613 1.21145 0.94675 1.04787 1.06261 1.17661 0.93362 0.90332 0.88807 1.19515 0.91158 0.94818 1.41537 0.88984 1.26164 0.95266 1.01198 0.91124 1.69655 1.10956 1.27188 1.36107 0.86254 0.80809 0.79132 0.79178 1.19640 1.22202 1.16918 1.21216 0.91752 1.03093 1.05341 1.21145 0.92949 0.98985 1.10307 0.90924 0.91476 0.91345 0.86053 0.85325 0.84961 0.90182 0.90330 0.90697 0.76536 0.88563 0.88366 0.87869 0.90497 0.86283 0.85317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 10.01 36.00 0.36 -0.36 16 2 C -0.05 -0.43 5.88 -104.65 -0.62 -1.05 16 3 C -0.16 -1.43 9.70 -39.56 -0.38 -1.81 16 4 C -0.08 -0.71 10.04 -39.60 -0.40 -1.10 16 5 C -0.16 -1.81 9.99 -39.43 -0.39 -2.20 16 6 C 0.14 1.75 6.55 -39.22 -0.26 1.50 16 7 O -0.28 -4.21 9.35 -39.27 -0.37 -4.58 16 8 C 0.07 0.86 2.66 -27.89 -0.07 0.79 16 9 H 0.10 0.96 6.08 -51.93 -0.32 0.65 16 10 C -0.18 -1.70 9.16 37.16 0.34 -1.36 16 11 C 0.51 8.78 7.02 -10.99 -0.08 8.71 16 12 O -0.49 -11.07 13.97 -14.31 -0.20 -11.27 16 13 N -0.66 -10.76 5.30 -9.91 -0.05 -10.81 16 14 C 0.16 3.34 6.28 -83.77 -0.53 2.81 16 15 C -0.26 -5.20 9.97 -39.10 -0.39 -5.59 16 16 C -0.07 -1.39 10.02 -39.70 -0.40 -1.79 16 17 C -0.25 -6.08 7.07 -38.84 -0.27 -6.35 16 18 C 0.10 2.70 5.11 -106.85 -0.55 2.15 16 19 C -0.44 -12.53 9.60 -37.74 -0.36 -12.89 16 20 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 21 C 0.08 2.17 5.47 -17.35 -0.09 2.08 16 22 N -0.81 -22.43 13.93 55.55 0.77 -21.65 16 23 Si 0.92 21.26 24.43 -169.99 -4.15 17.11 16 24 H -0.27 -6.02 6.52 56.52 0.37 -5.65 16 25 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.25 -5.75 6.83 56.52 0.39 -5.37 16 27 C -0.19 -4.80 8.43 -38.69 -0.33 -5.13 16 28 C -0.22 -2.21 7.93 -39.43 -0.31 -2.52 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 31 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 32 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 33 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 34 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.08 0.59 7.76 -51.93 -0.40 0.19 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.61 7.19 -51.93 -0.37 0.24 16 38 H 0.40 4.62 8.43 -40.82 -0.34 4.28 16 39 H 0.10 1.59 8.06 -52.48 -0.42 1.17 16 40 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 41 H 0.10 2.50 4.41 -52.49 -0.23 2.27 16 42 H 0.28 7.08 8.30 -40.82 -0.34 6.74 16 43 H 0.12 3.12 6.25 -52.49 -0.33 2.79 16 44 H 0.13 1.09 5.62 -52.49 -0.30 0.79 16 LS Contribution 363.16 15.07 5.47 5.47 Total: -1.00 -33.02 363.16 -8.95 -41.97 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -5.70 Total: 7.88 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: -4.73 Total: -24.12 kcal Atomic # 7 Polarization: -33.18 SS G_CDS: 0.72 Total: -32.46 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.57 Total: -15.85 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.15 Total: 17.11 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.02 -8.95 -41.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460156836.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.422 kcal (2) G-P(sol) polarization free energy of solvation -33.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds