Wall clock time and date at job start Tue Mar 31 2020 13:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38287 * 119.97256 * 2 1 4 4 C 1.38248 * 120.11001 * 179.97438 * 3 2 1 5 5 C 1.38170 * 120.05461 * 0.02562 * 4 3 2 6 6 C 1.38707 * 119.94593 * 359.97438 * 5 4 3 7 7 O 1.35896 * 120.05759 * 180.02562 * 6 5 4 8 8 C 1.42898 * 117.00371 * 178.36920 * 7 6 5 9 9 H 1.09001 * 109.46924 * 37.15650 * 8 7 6 10 10 C 1.52996 * 109.46964 * 277.15418 * 8 7 6 11 11 C 1.50695 * 109.47271 * 157.15414 * 8 7 6 12 12 O 1.21293 * 119.99954 * 5.00013 * 11 8 7 13 13 N 1.34776 * 120.00325 * 185.00089 * 11 8 7 14 14 C 1.39937 * 120.00658 * 174.80923 * 13 11 8 15 15 C 1.39287 * 119.95257 * 215.63685 * 14 13 11 16 16 C 1.38477 * 120.43229 * 179.71902 * 15 14 13 17 17 C 1.37684 * 120.32091 * 0.55435 * 16 15 14 18 18 C 1.40745 * 119.88381 * 359.72079 * 17 16 15 19 19 C 1.41412 * 120.21067 * 180.02562 * 18 17 16 20 20 H 1.07997 * 119.99726 * 147.53679 * 19 18 17 21 21 C 1.39930 * 120.00107 * 327.53631 * 19 18 17 22 22 N 1.30828 * 120.00263 * 168.73803 * 21 19 18 23 23 Si 1.86805 * 119.99892 * 348.73957 * 21 19 18 24 24 H 1.48498 * 109.47400 * 89.15411 * 23 21 19 25 25 H 1.48504 * 109.47032 * 209.15694 * 23 21 19 26 26 H 1.48499 * 109.47030 * 329.15279 * 23 21 19 27 27 C 1.38242 * 119.94320 * 35.90809 * 14 13 11 28 28 C 1.38122 * 119.96982 * 180.29925 * 2 1 3 29 29 H 1.09005 * 109.47238 * 89.99976 * 1 2 3 30 30 H 1.09000 * 109.47315 * 210.00386 * 1 2 3 31 31 H 1.09001 * 109.47038 * 330.00283 * 1 2 3 32 32 H 1.07992 * 119.94418 * 0.02562 * 3 2 1 33 33 H 1.07995 * 119.97213 * 179.97438 * 4 3 2 34 34 H 1.07997 * 120.02529 * 179.97438 * 5 4 3 35 35 H 1.08997 * 109.47150 * 179.97438 * 10 8 7 36 36 H 1.09001 * 109.47490 * 299.99885 * 10 8 7 37 37 H 1.08997 * 109.47077 * 60.00144 * 10 8 7 38 38 H 0.97005 * 119.99637 * 354.53528 * 13 11 8 39 39 H 1.08007 * 119.77935 * 359.97438 * 15 14 13 40 40 H 1.07997 * 119.84600 * 180.27844 * 16 15 14 41 41 H 1.08002 * 120.06226 * 179.74904 * 17 16 15 42 42 H 0.96997 * 120.00110 * 180.02562 * 22 21 19 43 43 H 1.08001 * 120.16252 * 359.97438 * 27 14 13 44 44 H 1.08001 * 120.03191 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1979 0.0000 4 6 3.5803 1.2012 0.0005 5 6 4.2752 0.0070 0.0005 6 6 3.5845 -1.1959 0.0005 7 8 4.2657 -2.3719 0.0011 8 6 3.4896 -3.5712 0.0373 9 1 2.5898 -3.4399 -0.5638 10 6 3.0965 -3.8808 1.4831 11 6 4.3023 -4.7124 -0.5177 12 8 5.4636 -4.5384 -0.8216 13 7 3.7388 -5.9264 -0.6765 14 6 4.4585 -6.9569 -1.2917 15 6 3.8002 -7.8736 -2.1080 16 6 4.5035 -8.8938 -2.7262 17 6 5.8606 -9.0198 -2.5315 18 6 6.5384 -8.1042 -1.7048 19 6 7.9323 -8.2268 -1.5003 20 1 8.5355 -7.3439 -1.3491 21 6 8.5299 -9.4920 -1.4940 22 7 9.8333 -9.6000 -1.5267 23 14 7.4666 -11.0270 -1.4389 24 1 7.1308 -11.4465 -2.8233 25 1 8.2078 -12.1183 -0.7570 26 1 6.2161 -10.7363 -0.6926 27 6 5.8207 -7.0667 -1.0838 28 6 2.1970 -1.1965 -0.0062 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6565 2.1324 0.0004 33 1 4.1176 2.1381 0.0001 34 1 5.3551 0.0101 0.0005 35 1 2.5042 -4.7953 1.5107 36 1 3.9963 -4.0121 2.0841 37 1 2.5087 -3.0554 1.8845 38 1 2.8358 -6.0869 -0.3608 39 1 2.7349 -7.7858 -2.2629 40 1 3.9843 -9.5967 -3.3608 41 1 6.4043 -9.8194 -3.0125 42 1 10.2476 -10.4771 -1.5227 43 1 6.3314 -6.3587 -0.4479 44 1 1.6570 -2.1318 -0.0116 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460156836.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:01 Heat of formation + Delta-G solvation = -46.118327 kcal Electronic energy + Delta-G solvation = -26234.988878 eV Core-core repulsion = 22502.466134 eV Total energy + Delta-G solvation = -3732.522744 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.93654 -40.91336 -39.35499 -38.44260 -36.28315 -35.13335 -33.93718 -32.82164 -32.17665 -30.91196 -30.21676 -27.79485 -27.18904 -26.00767 -24.10190 -22.91898 -22.69104 -22.43416 -21.18142 -19.76888 -19.01325 -18.53997 -17.74349 -17.32835 -16.93924 -16.73429 -16.62106 -16.43334 -15.95304 -15.51160 -15.22005 -15.06187 -14.64388 -14.46230 -14.30084 -14.24700 -14.01332 -13.89360 -13.50512 -13.36158 -13.31327 -13.01521 -12.94743 -12.90240 -12.68516 -12.38965 -12.34460 -12.00824 -11.77713 -11.67391 -11.65355 -11.17300 -11.05588 -10.66434 -9.77197 -9.54987 -9.16463 -8.95147 -8.87344 -6.57302 0.35741 0.45661 0.58162 0.78277 1.24894 1.40987 1.42067 1.48612 1.57921 2.12908 2.50665 2.61476 2.78360 3.36187 3.47101 3.61345 3.78783 3.82878 3.96747 4.17949 4.31916 4.35075 4.42178 4.50752 4.55542 4.58511 4.59671 4.72487 4.80446 4.84260 4.88164 4.94017 4.96842 4.98280 5.06135 5.29626 5.31279 5.33908 5.49277 5.56590 5.64717 5.67959 5.76248 5.85719 5.90926 6.20518 6.32966 6.35012 6.50516 6.71919 6.77025 7.13764 8.22651 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.024935 B = 0.002509 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.646066 B =11158.935490 C =11846.931672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.050 4.050 3 C -0.164 4.164 4 C -0.077 4.077 5 C -0.184 4.184 6 C 0.111 3.889 7 O -0.320 6.320 8 C 0.078 3.922 9 H 0.134 0.866 10 C -0.170 4.170 11 C 0.503 3.497 12 O -0.554 6.554 13 N -0.646 5.646 14 C 0.164 3.836 15 C -0.228 4.228 16 C -0.064 4.064 17 C -0.259 4.259 18 C 0.080 3.920 19 C -0.490 4.490 20 H 0.037 0.963 21 C 0.037 3.963 22 N -0.864 5.864 23 Si 0.983 3.017 24 H -0.249 1.249 25 H -0.280 1.280 26 H -0.248 1.248 27 C -0.222 4.222 28 C -0.217 4.217 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.118 0.882 35 H 0.111 0.889 36 H 0.054 0.946 37 H 0.096 0.904 38 H 0.429 0.571 39 H 0.152 0.848 40 H 0.146 0.854 41 H 0.104 0.896 42 H 0.293 0.707 43 H 0.086 0.914 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.427 14.632 4.866 29.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.051 4.051 3 C -0.182 4.182 4 C -0.095 4.095 5 C -0.203 4.203 6 C 0.066 3.934 7 O -0.234 6.234 8 C 0.018 3.982 9 H 0.151 0.849 10 C -0.227 4.227 11 C 0.290 3.710 12 O -0.430 6.430 13 N -0.294 5.294 14 C 0.071 3.929 15 C -0.249 4.249 16 C -0.083 4.083 17 C -0.279 4.279 18 C 0.077 3.923 19 C -0.521 4.521 20 H 0.055 0.945 21 C -0.175 4.175 22 N -0.491 5.491 23 Si 0.805 3.195 24 H -0.174 1.174 25 H -0.207 1.207 26 H -0.171 1.171 27 C -0.244 4.244 28 C -0.235 4.235 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.166 0.834 33 H 0.168 0.832 34 H 0.136 0.864 35 H 0.129 0.871 36 H 0.073 0.927 37 H 0.114 0.886 38 H 0.269 0.731 39 H 0.170 0.830 40 H 0.163 0.837 41 H 0.122 0.878 42 H 0.104 0.896 43 H 0.104 0.896 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -24.148 14.690 4.672 28.648 hybrid contribution 0.850 -0.496 0.161 0.997 sum -23.298 14.194 4.832 27.706 Atomic orbital electron populations 1.20893 0.88628 1.04181 1.03413 1.20123 0.97698 0.92001 0.95230 1.21329 0.93956 0.98723 1.04176 1.21235 0.94834 0.97097 0.96299 1.20656 1.00575 0.90757 1.08317 1.19346 0.91806 0.85182 0.97017 1.86204 1.36107 1.12455 1.88621 1.22273 0.93710 0.81580 1.00613 0.84876 1.22362 1.03068 1.05494 0.91818 1.21034 0.87651 0.84373 0.77893 1.90811 1.19092 1.83607 1.49450 1.43080 1.18946 1.08418 1.58973 1.17602 0.90716 0.89399 0.95205 1.20698 1.00614 0.99419 1.04164 1.20923 0.92700 0.97228 0.97416 1.21284 0.96434 1.04274 1.05902 1.17768 0.92659 0.91938 0.89940 1.19429 0.92502 0.94031 1.46102 0.94512 1.27011 0.96524 1.03764 0.90241 1.69707 1.12478 1.28408 1.38511 0.85295 0.78806 0.75216 0.80184 1.17409 1.20703 1.17111 1.21142 0.94031 1.02834 1.06359 1.21362 0.91765 1.00534 1.09872 0.90080 0.90340 0.89979 0.83383 0.83230 0.86406 0.87070 0.92711 0.88573 0.73135 0.83006 0.83661 0.87838 0.89627 0.89562 0.83290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 10.01 71.24 0.71 -0.21 16 2 C -0.05 -0.75 5.88 -19.88 -0.12 -0.87 16 3 C -0.16 -2.42 9.70 22.28 0.22 -2.20 16 4 C -0.08 -1.36 10.04 22.26 0.22 -1.13 16 5 C -0.18 -4.45 9.99 22.37 0.22 -4.22 16 6 C 0.11 2.80 6.55 22.51 0.15 2.94 16 7 O -0.32 -9.90 9.35 -73.39 -0.69 -10.58 16 8 C 0.08 1.85 2.66 29.84 0.08 1.93 16 9 H 0.13 2.16 6.08 -2.39 -0.01 2.14 16 10 C -0.17 -2.89 9.16 71.98 0.66 -2.23 16 11 C 0.50 17.37 7.02 87.66 0.62 17.98 16 12 O -0.55 -26.91 13.97 15.92 0.22 -26.68 16 13 N -0.65 -19.32 5.30 -303.65 -1.61 -20.93 16 14 C 0.16 6.61 6.28 38.10 0.24 6.85 16 15 C -0.23 -7.90 9.97 22.58 0.23 -7.67 16 16 C -0.06 -2.44 10.02 22.20 0.22 -2.21 16 17 C -0.26 -12.36 7.07 22.75 0.16 -12.20 16 18 C 0.08 4.43 5.11 -21.31 -0.11 4.32 16 19 C -0.49 -30.54 9.60 23.46 0.23 -30.31 16 20 H 0.04 2.56 8.06 -2.91 -0.02 2.53 16 21 C 0.04 2.11 5.47 85.25 0.47 2.58 16 22 N -0.86 -51.03 13.93 21.82 0.30 -50.72 16 23 Si 0.98 44.43 24.43 68.60 1.68 46.11 16 24 H -0.25 -10.33 6.52 99.48 0.65 -9.68 16 25 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 26 H -0.25 -11.12 6.83 99.48 0.68 -10.44 16 27 C -0.22 -11.59 8.43 22.85 0.19 -11.40 16 28 C -0.22 -3.92 7.93 22.37 0.18 -3.75 16 29 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.08 0.48 8.09 -2.39 -0.02 0.46 16 31 H 0.08 0.46 8.09 -2.39 -0.02 0.44 16 32 H 0.15 1.36 8.06 -2.91 -0.02 1.33 16 33 H 0.15 1.86 8.06 -2.91 -0.02 1.83 16 34 H 0.12 3.00 8.06 -2.91 -0.02 2.98 16 35 H 0.11 1.16 7.76 -2.39 -0.02 1.14 16 36 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.10 1.26 7.19 -2.39 -0.02 1.25 16 38 H 0.43 7.79 8.43 -92.70 -0.78 7.01 16 39 H 0.15 3.71 8.06 -2.91 -0.02 3.69 16 40 H 0.15 4.24 8.06 -2.91 -0.02 4.21 16 41 H 0.10 4.88 4.41 -2.91 -0.01 4.86 16 42 H 0.29 15.44 8.30 -92.71 -0.77 14.67 16 43 H 0.09 5.00 6.25 -2.91 -0.02 4.98 16 44 H 0.15 1.91 5.62 -2.91 -0.02 1.90 16 Total: -1.00 -83.37 363.16 4.64 -78.73 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: 0.17 Total: 25.89 kcal Atomic # 6 Polarization: -46.38 SS G_CDS: 4.56 Total: -41.82 kcal Atomic # 7 Polarization: -70.35 SS G_CDS: -1.30 Total: -71.65 kcal Atomic # 8 Polarization: -36.80 SS G_CDS: -0.46 Total: -37.27 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.68 Total: 46.11 kcal Total: -83.37 4.64 -78.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460156836.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.616 kcal (2) G-P(sol) polarization free energy of solvation -83.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds