Wall clock time and date at job start Tue Mar 31 2020 13:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35976 * 116.99682 * 2 1 4 4 C 1.38548 * 120.08288 * 359.72713 * 3 2 1 5 5 C 1.38248 * 120.01475 * 179.78733 * 4 3 2 6 6 C 1.50693 * 119.91254 * 180.25171 * 5 4 3 7 7 C 1.38278 * 120.17710 * 0.46703 * 5 4 3 8 8 C 1.38195 * 120.16623 * 359.78564 * 7 5 4 9 9 C 1.38726 * 119.98481 * 359.97438 * 8 7 5 10 10 N 1.40114 * 120.09385 * 180.02562 * 9 8 7 11 11 C 1.34777 * 119.99878 * 325.38487 * 10 9 8 12 12 O 1.21298 * 120.00050 * 4.43030 * 11 10 9 13 13 C 1.50701 * 120.00057 * 184.42884 * 11 10 9 14 14 H 1.08999 * 109.47503 * 299.99667 * 13 11 10 15 15 C 1.50705 * 109.47149 * 60.00030 * 13 11 10 16 16 H 1.07997 * 119.99547 * 35.01043 * 15 13 11 17 17 C 1.37878 * 119.99772 * 215.00512 * 15 13 11 18 18 N 1.31513 * 120.00091 * 5.01835 * 17 15 13 19 19 Si 1.86802 * 119.99771 * 185.01379 * 17 15 13 20 20 H 1.48499 * 109.46996 * 90.00066 * 19 17 15 21 21 H 1.48495 * 109.46965 * 210.00179 * 19 17 15 22 22 H 1.48497 * 109.47087 * 330.00196 * 19 17 15 23 23 C 1.50700 * 109.47188 * 179.97438 * 13 11 10 24 24 C 1.38234 * 120.00249 * 294.57404 * 23 13 11 25 25 C 1.38242 * 119.99989 * 179.78594 * 24 23 13 26 26 C 1.38233 * 119.99664 * 0.43848 * 25 24 23 27 27 C 1.38229 * 120.00574 * 359.81159 * 26 25 24 28 28 C 1.38236 * 120.00127 * 114.83984 * 23 13 11 29 29 H 1.08996 * 109.47318 * 299.99725 * 1 2 3 30 30 H 1.09004 * 109.47043 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47404 * 60.00206 * 1 2 3 32 32 H 1.08005 * 119.99364 * 359.97438 * 4 3 2 33 33 H 1.09006 * 109.47272 * 270.21192 * 6 5 4 34 34 H 1.09004 * 109.47348 * 30.21190 * 6 5 4 35 35 H 1.08996 * 109.47298 * 150.21043 * 6 5 4 36 36 H 1.08001 * 119.92060 * 179.76938 * 7 5 4 37 37 H 1.07998 * 120.00941 * 179.97438 * 8 7 5 38 38 H 0.97005 * 120.00691 * 145.37999 * 10 9 8 39 39 H 0.96998 * 119.99898 * 180.02562 * 18 17 15 40 40 H 1.07997 * 120.00116 * 359.97438 * 24 23 13 41 41 H 1.07999 * 119.99575 * 180.27079 * 25 24 23 42 42 H 1.08000 * 119.99500 * 179.83143 * 26 25 24 43 43 H 1.07995 * 120.00499 * 179.97438 * 27 26 25 44 44 H 1.08004 * 119.99786 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 1.2933 2.3746 -0.0057 5 6 1.9223 3.6057 -0.0013 6 6 1.1010 4.8692 -0.0017 7 6 3.3030 3.6808 -0.0009 8 6 4.0613 2.5255 -0.0004 9 6 3.4372 1.2865 0.0001 10 7 4.2038 0.1137 0.0011 11 6 5.3768 0.0748 -0.6615 12 8 5.8078 1.0774 -1.1911 13 6 6.1530 -1.2143 -0.7445 14 1 6.4072 -1.5508 0.2606 15 6 5.3137 -2.2629 -1.4282 16 1 4.6428 -1.9815 -2.2263 17 6 5.4027 -3.5813 -1.0347 18 7 6.1441 -3.9100 0.0006 19 14 4.4698 -4.9006 -1.9721 20 1 5.3242 -5.4283 -3.0660 21 1 4.1117 -6.0056 -1.0469 22 1 3.2321 -4.3168 -2.5484 23 6 7.4168 -0.9898 -1.5342 24 6 7.3450 -0.6672 -2.8764 25 6 8.5042 -0.4569 -3.5997 26 6 9.7353 -0.5781 -2.9828 27 6 9.8073 -0.9058 -1.6418 28 6 8.6480 -1.1118 -0.9176 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 -0.8900 32 1 0.2147 2.3194 -0.0106 33 1 0.9034 5.1737 -1.0296 34 1 0.1566 4.6889 0.5118 35 1 1.6490 5.6589 0.5121 36 1 3.7901 4.6447 -0.0011 37 1 5.1396 2.5871 -0.0005 38 1 3.8905 -0.6703 0.4787 39 1 6.2070 -4.8376 0.2771 40 1 6.3833 -0.5764 -3.3594 41 1 8.4480 -0.2005 -4.6473 42 1 10.6410 -0.4165 -3.5485 43 1 10.7691 -1.0009 -1.1600 44 1 8.7041 -1.3677 0.1302 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001519673735.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:19 Heat of formation + Delta-G solvation = -29.169834 kcal Electronic energy + Delta-G solvation = -27221.206734 eV Core-core repulsion = 23489.418931 eV Total energy + Delta-G solvation = -3731.787802 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.37164 -39.05201 -37.88070 -37.16192 -34.33859 -33.69400 -31.33492 -30.90167 -29.95599 -29.90019 -27.83284 -27.39937 -25.69608 -23.86530 -22.34335 -21.68054 -21.53174 -20.59813 -19.25986 -17.72927 -16.95288 -16.76289 -16.20524 -15.83600 -15.65486 -15.33698 -14.53050 -14.37814 -14.17465 -14.04971 -13.82328 -13.70949 -13.57977 -13.27778 -12.92776 -12.50439 -12.33168 -12.30012 -12.10282 -11.90126 -11.68510 -11.55363 -11.31948 -11.10431 -11.04808 -10.98164 -10.78424 -10.38324 -10.28422 -10.00969 -9.65214 -9.44756 -8.80678 -8.63105 -8.29216 -7.96202 -7.64869 -7.32763 -6.28681 -4.33869 1.54008 1.65945 2.35467 2.38156 3.21272 3.28005 3.30538 3.41242 3.53794 3.87188 4.13944 4.29919 4.80109 4.87155 5.05193 5.09535 5.12878 5.19738 5.22061 5.43615 5.52892 5.58160 5.68910 5.71002 5.74706 5.78468 5.87765 5.93532 6.06002 6.19699 6.30250 6.39904 6.47462 6.53555 6.57324 6.78829 6.84136 6.95030 6.97268 7.14654 7.22972 7.35472 7.42334 7.62384 7.66371 7.74810 7.92666 8.04405 8.25756 8.70129 9.11113 9.32024 10.79982 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010905 B = 0.004582 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.061119 B = 6109.513374 C = 8068.906347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.310 6.310 3 C 0.097 3.903 4 C -0.194 4.194 5 C -0.082 4.082 6 C -0.108 4.108 7 C -0.138 4.138 8 C -0.090 4.090 9 C 0.134 3.866 10 N -0.661 5.661 11 C 0.528 3.472 12 O -0.550 6.550 13 C 0.051 3.949 14 H 0.095 0.905 15 C -0.513 4.513 16 H 0.063 0.937 17 C 0.076 3.924 18 N -0.880 5.880 19 Si 0.899 3.101 20 H -0.277 1.277 21 H -0.284 1.284 22 H -0.271 1.271 23 C -0.013 4.013 24 C -0.084 4.084 25 C -0.134 4.134 26 C -0.148 4.148 27 C -0.132 4.132 28 C -0.119 4.119 29 H 0.051 0.949 30 H 0.098 0.902 31 H 0.051 0.949 32 H 0.125 0.875 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.121 0.879 37 H 0.147 0.853 38 H 0.419 0.581 39 H 0.267 0.733 40 H 0.111 0.889 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.107 0.893 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.584 9.852 1.775 12.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.223 6.223 3 C 0.050 3.950 4 C -0.213 4.213 5 C -0.083 4.083 6 C -0.164 4.164 7 C -0.157 4.157 8 C -0.110 4.110 9 C 0.038 3.962 10 N -0.305 5.305 11 C 0.320 3.680 12 O -0.428 6.428 13 C 0.030 3.970 14 H 0.113 0.887 15 C -0.551 4.551 16 H 0.081 0.919 17 C -0.129 4.129 18 N -0.516 5.516 19 Si 0.726 3.274 20 H -0.203 1.203 21 H -0.210 1.210 22 H -0.196 1.196 23 C -0.014 4.014 24 C -0.102 4.102 25 C -0.152 4.152 26 C -0.166 4.166 27 C -0.150 4.150 28 C -0.137 4.137 29 H 0.070 0.930 30 H 0.116 0.884 31 H 0.070 0.930 32 H 0.143 0.857 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.139 0.861 37 H 0.165 0.835 38 H 0.255 0.745 39 H 0.077 0.923 40 H 0.129 0.871 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.125 0.875 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.090 10.118 1.503 12.446 hybrid contribution -0.900 -1.210 -0.372 1.553 sum -7.991 8.908 1.131 12.020 Atomic orbital electron populations 1.22991 0.78908 1.03721 1.00810 1.86138 1.20854 1.26284 1.88997 1.18834 0.90800 0.84773 1.00644 1.20808 0.99286 0.91383 1.09817 1.19559 0.93933 0.94229 1.00537 1.20714 0.98998 0.94759 1.01971 1.20807 0.92803 0.98102 1.03997 1.21224 1.01512 0.89771 0.98495 1.17296 0.86867 0.88179 1.03847 1.43504 1.21375 1.13136 1.52532 1.21920 0.79857 0.91448 0.74793 1.90565 1.68701 1.36963 1.46571 1.18135 0.89940 0.89096 0.99837 0.88687 1.20666 1.23787 0.90970 1.19674 0.91898 1.24936 0.94807 0.98741 0.94370 1.69868 1.38710 1.18799 1.24198 0.86471 0.80183 0.80961 0.79827 1.20326 1.21000 1.19565 1.20015 0.94710 0.92584 0.94091 1.20834 0.97377 0.97805 0.94199 1.20959 0.92987 1.02272 0.98991 1.20806 0.96868 1.03780 0.95127 1.20902 0.97592 1.01949 0.94541 1.21001 0.92184 1.00928 0.99609 0.93032 0.88387 0.93001 0.85696 0.91507 0.92037 0.91667 0.86079 0.83522 0.74462 0.92268 0.87115 0.87565 0.87681 0.87502 0.86901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.33 16 2 O -0.31 -4.97 10.05 -19.67 -0.20 -5.17 16 3 C 0.10 1.60 6.70 -39.07 -0.26 1.34 16 4 C -0.19 -2.68 8.69 -39.46 -0.34 -3.02 16 5 C -0.08 -1.08 5.88 -104.61 -0.62 -1.69 16 6 C -0.11 -1.03 10.01 36.00 0.36 -0.67 16 7 C -0.14 -2.02 9.69 -39.58 -0.38 -2.40 16 8 C -0.09 -1.58 8.70 -39.42 -0.34 -1.92 16 9 C 0.13 2.50 6.32 -83.49 -0.53 1.97 16 10 N -0.66 -13.39 5.07 -9.75 -0.05 -13.44 16 11 C 0.53 11.92 6.89 -10.98 -0.08 11.85 16 12 O -0.55 -13.09 12.81 5.54 0.07 -13.02 16 13 C 0.05 1.21 2.45 -94.07 -0.23 0.98 16 14 H 0.10 2.38 6.99 -51.93 -0.36 2.02 16 15 C -0.51 -12.99 7.55 -34.44 -0.26 -13.25 16 16 H 0.06 1.64 7.82 -52.49 -0.41 1.23 16 17 C 0.08 1.95 5.45 -17.82 -0.10 1.85 16 18 N -0.88 -23.16 12.77 55.43 0.71 -22.45 16 19 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 23 C -0.01 -0.30 4.31 -104.62 -0.45 -0.75 16 24 C -0.08 -1.89 8.28 -39.58 -0.33 -2.22 16 25 C -0.13 -2.64 10.05 -39.58 -0.40 -3.04 16 26 C -0.15 -2.73 10.05 -39.59 -0.40 -3.13 16 27 C -0.13 -2.52 10.05 -39.59 -0.40 -2.92 16 28 C -0.12 -2.58 9.67 -39.58 -0.38 -2.96 16 29 H 0.05 0.47 7.68 -51.93 -0.40 0.07 16 30 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.05 0.51 7.65 -51.93 -0.40 0.11 16 32 H 0.13 1.39 6.30 -52.48 -0.33 1.06 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 35 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 36 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 37 H 0.15 2.79 6.19 -52.49 -0.33 2.46 16 38 H 0.42 8.28 8.52 -40.82 -0.35 7.93 16 39 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 40 H 0.11 2.55 7.91 -52.49 -0.42 2.13 16 41 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 42 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 43 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 44 H 0.11 2.35 7.95 -52.48 -0.42 1.93 16 LS Contribution 372.09 15.07 5.61 5.61 Total: -1.00 -29.33 372.09 -8.94 -38.27 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -5.92 Total: 13.64 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: -4.14 Total: -18.66 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: 0.66 Total: -35.89 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.13 Total: -18.19 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.33 -8.94 -38.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519673735.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.099 kcal (2) G-P(sol) polarization free energy of solvation -29.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds