Wall clock time and date at job start Tue Mar 31 2020 13:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35976 * 116.99682 * 2 1 4 4 C 1.38548 * 120.08288 * 359.72713 * 3 2 1 5 5 C 1.38248 * 120.01475 * 179.78733 * 4 3 2 6 6 C 1.50693 * 119.91254 * 180.25171 * 5 4 3 7 7 C 1.38278 * 120.17710 * 0.46703 * 5 4 3 8 8 C 1.38195 * 120.16623 * 359.78564 * 7 5 4 9 9 C 1.38726 * 119.98481 * 359.97438 * 8 7 5 10 10 N 1.40114 * 120.09385 * 180.02562 * 9 8 7 11 11 C 1.34777 * 119.99878 * 325.38487 * 10 9 8 12 12 O 1.21298 * 120.00050 * 4.43030 * 11 10 9 13 13 C 1.50701 * 120.00057 * 184.42884 * 11 10 9 14 14 H 1.08999 * 109.47503 * 299.99667 * 13 11 10 15 15 C 1.50705 * 109.47149 * 60.00030 * 13 11 10 16 16 H 1.07997 * 119.99547 * 35.01043 * 15 13 11 17 17 C 1.37878 * 119.99772 * 215.00512 * 15 13 11 18 18 N 1.31513 * 120.00091 * 5.01835 * 17 15 13 19 19 Si 1.86802 * 119.99771 * 185.01379 * 17 15 13 20 20 H 1.48499 * 109.46996 * 90.00066 * 19 17 15 21 21 H 1.48495 * 109.46965 * 210.00179 * 19 17 15 22 22 H 1.48497 * 109.47087 * 330.00196 * 19 17 15 23 23 C 1.50700 * 109.47188 * 179.97438 * 13 11 10 24 24 C 1.38234 * 120.00249 * 294.57404 * 23 13 11 25 25 C 1.38242 * 119.99989 * 179.78594 * 24 23 13 26 26 C 1.38233 * 119.99664 * 0.43848 * 25 24 23 27 27 C 1.38229 * 120.00574 * 359.81159 * 26 25 24 28 28 C 1.38236 * 120.00127 * 114.83984 * 23 13 11 29 29 H 1.08996 * 109.47318 * 299.99725 * 1 2 3 30 30 H 1.09004 * 109.47043 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47404 * 60.00206 * 1 2 3 32 32 H 1.08005 * 119.99364 * 359.97438 * 4 3 2 33 33 H 1.09006 * 109.47272 * 270.21192 * 6 5 4 34 34 H 1.09004 * 109.47348 * 30.21190 * 6 5 4 35 35 H 1.08996 * 109.47298 * 150.21043 * 6 5 4 36 36 H 1.08001 * 119.92060 * 179.76938 * 7 5 4 37 37 H 1.07998 * 120.00941 * 179.97438 * 8 7 5 38 38 H 0.97005 * 120.00691 * 145.37999 * 10 9 8 39 39 H 0.96998 * 119.99898 * 180.02562 * 18 17 15 40 40 H 1.07997 * 120.00116 * 359.97438 * 24 23 13 41 41 H 1.07999 * 119.99575 * 180.27079 * 25 24 23 42 42 H 1.08000 * 119.99500 * 179.83143 * 26 25 24 43 43 H 1.07995 * 120.00499 * 179.97438 * 27 26 25 44 44 H 1.08004 * 119.99786 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 1.2933 2.3746 -0.0057 5 6 1.9223 3.6057 -0.0013 6 6 1.1010 4.8692 -0.0017 7 6 3.3030 3.6808 -0.0009 8 6 4.0613 2.5255 -0.0004 9 6 3.4372 1.2865 0.0001 10 7 4.2038 0.1137 0.0011 11 6 5.3768 0.0748 -0.6615 12 8 5.8078 1.0774 -1.1911 13 6 6.1530 -1.2143 -0.7445 14 1 6.4072 -1.5508 0.2606 15 6 5.3137 -2.2629 -1.4282 16 1 4.6428 -1.9815 -2.2263 17 6 5.4027 -3.5813 -1.0347 18 7 6.1441 -3.9100 0.0006 19 14 4.4698 -4.9006 -1.9721 20 1 5.3242 -5.4283 -3.0660 21 1 4.1117 -6.0056 -1.0469 22 1 3.2321 -4.3168 -2.5484 23 6 7.4168 -0.9898 -1.5342 24 6 7.3450 -0.6672 -2.8764 25 6 8.5042 -0.4569 -3.5997 26 6 9.7353 -0.5781 -2.9828 27 6 9.8073 -0.9058 -1.6418 28 6 8.6480 -1.1118 -0.9176 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 -0.8900 32 1 0.2147 2.3194 -0.0106 33 1 0.9034 5.1737 -1.0296 34 1 0.1566 4.6889 0.5118 35 1 1.6490 5.6589 0.5121 36 1 3.7901 4.6447 -0.0011 37 1 5.1396 2.5871 -0.0005 38 1 3.8905 -0.6703 0.4787 39 1 6.2070 -4.8376 0.2771 40 1 6.3833 -0.5764 -3.3594 41 1 8.4480 -0.2005 -4.6473 42 1 10.6410 -0.4165 -3.5485 43 1 10.7691 -1.0009 -1.1600 44 1 8.7041 -1.3677 0.1302 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001519673735.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:18 Heat of formation + Delta-G solvation = -44.518316 kcal Electronic energy + Delta-G solvation = -27221.872294 eV Core-core repulsion = 23489.418931 eV Total energy + Delta-G solvation = -3732.453363 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.74042 -40.57596 -39.41241 -38.37599 -35.82293 -35.56859 -33.02589 -32.23938 -31.56022 -31.07408 -29.29210 -28.54729 -26.95478 -25.65810 -23.63644 -23.25395 -22.87636 -22.01992 -20.92035 -19.08907 -18.71743 -18.11059 -17.82347 -17.36806 -16.89319 -16.61953 -16.25962 -15.91766 -15.81667 -15.41291 -15.10776 -15.05436 -14.64156 -14.56241 -14.41308 -14.08246 -14.00405 -13.48487 -13.34548 -13.21508 -13.07233 -12.92999 -12.86845 -12.78324 -12.38457 -12.21667 -12.07292 -11.98365 -11.86645 -11.67533 -11.32470 -11.03569 -10.73348 -10.41706 -9.58542 -9.52201 -9.30577 -8.66380 -8.25052 -6.35695 0.29627 0.44944 0.72996 0.77124 1.39596 1.41329 1.50530 1.83186 2.27593 2.39616 2.46114 2.83431 3.04340 3.23903 3.86051 3.95845 4.14013 4.21133 4.27820 4.28923 4.36796 4.38945 4.40878 4.43597 4.50088 4.65804 4.72137 4.77919 4.84818 4.89016 4.90943 4.94061 5.07791 5.12368 5.23865 5.33607 5.35963 5.41736 5.60835 5.65145 5.67985 5.76486 5.80646 5.89999 5.92919 6.19496 6.37248 6.47698 6.60189 6.70784 7.30256 7.40674 8.83344 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010905 B = 0.004582 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.061119 B = 6109.513374 C = 8068.906347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.338 6.338 3 C 0.093 3.907 4 C -0.190 4.190 5 C -0.069 4.069 6 C -0.106 4.106 7 C -0.144 4.144 8 C -0.105 4.105 9 C 0.089 3.911 10 N -0.657 5.657 11 C 0.527 3.473 12 O -0.570 6.570 13 C 0.054 3.946 14 H 0.072 0.928 15 C -0.516 4.516 16 H 0.047 0.953 17 C 0.038 3.962 18 N -0.905 5.905 19 Si 0.954 3.046 20 H -0.279 1.279 21 H -0.276 1.276 22 H -0.270 1.270 23 C -0.040 4.040 24 C -0.109 4.109 25 C -0.134 4.134 26 C -0.141 4.141 27 C -0.128 4.128 28 C -0.142 4.142 29 H 0.073 0.927 30 H 0.111 0.889 31 H 0.065 0.935 32 H 0.159 0.841 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.144 0.856 37 H 0.122 0.878 38 H 0.416 0.584 39 H 0.269 0.731 40 H 0.091 0.909 41 H 0.136 0.864 42 H 0.149 0.851 43 H 0.142 0.858 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.637 11.242 0.948 14.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.252 6.252 3 C 0.045 3.955 4 C -0.209 4.209 5 C -0.070 4.070 6 C -0.163 4.163 7 C -0.162 4.162 8 C -0.125 4.125 9 C -0.006 4.006 10 N -0.300 5.300 11 C 0.318 3.682 12 O -0.449 6.449 13 C 0.033 3.967 14 H 0.090 0.910 15 C -0.554 4.554 16 H 0.065 0.935 17 C -0.165 4.165 18 N -0.542 5.542 19 Si 0.779 3.221 20 H -0.205 1.205 21 H -0.201 1.201 22 H -0.194 1.194 23 C -0.041 4.041 24 C -0.128 4.128 25 C -0.152 4.152 26 C -0.158 4.158 27 C -0.145 4.145 28 C -0.160 4.160 29 H 0.091 0.909 30 H 0.129 0.871 31 H 0.083 0.917 32 H 0.177 0.823 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.162 0.838 37 H 0.140 0.860 38 H 0.252 0.748 39 H 0.078 0.922 40 H 0.110 0.890 41 H 0.154 0.846 42 H 0.167 0.833 43 H 0.160 0.840 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.181 11.526 0.689 14.151 hybrid contribution -0.636 -1.522 -0.100 1.653 sum -8.817 10.004 0.589 13.348 Atomic orbital electron populations 1.23332 0.76299 1.05290 1.02455 1.86102 1.23669 1.26504 1.88968 1.18966 0.90162 0.86019 1.00318 1.21212 1.00829 0.90476 1.08411 1.20074 0.93638 0.95837 0.97412 1.20813 0.99319 0.92830 1.03294 1.21087 0.93710 0.97847 1.03567 1.21148 1.00708 0.90867 0.99786 1.17606 0.88093 0.87602 1.07290 1.43310 1.20870 1.13904 1.51888 1.21682 0.80610 0.90820 0.75128 1.90527 1.69465 1.37243 1.47709 1.18001 0.90709 0.89403 0.98556 0.90979 1.20672 1.23756 0.91776 1.19183 0.93476 1.25548 0.95623 1.00243 0.95044 1.69961 1.39885 1.19110 1.25219 0.85617 0.78990 0.78829 0.78671 1.20477 1.20059 1.19425 1.20063 0.94962 0.94393 0.94700 1.20827 0.97898 0.99811 0.94247 1.21323 0.92513 1.01030 1.00323 1.21290 0.97881 1.01669 0.94989 1.21313 0.97990 1.00216 0.95013 1.21150 0.92833 1.02136 0.99905 0.90861 0.87094 0.91672 0.82333 0.90192 0.90001 0.90257 0.83786 0.86022 0.74819 0.92170 0.89039 0.84639 0.83342 0.84022 0.87370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.81 113.37 1.11 1.52 16 2 O -0.34 -10.92 10.05 -93.29 -0.94 -11.86 16 3 C 0.09 3.08 6.70 22.60 0.15 3.23 16 4 C -0.19 -4.85 8.69 22.35 0.19 -4.66 16 5 C -0.07 -1.65 5.88 -19.85 -0.12 -1.77 16 6 C -0.11 -1.58 10.01 71.23 0.71 -0.86 16 7 C -0.14 -4.09 9.69 22.27 0.22 -3.87 16 8 C -0.10 -3.87 8.70 22.38 0.19 -3.68 16 9 C 0.09 3.48 6.32 38.19 0.24 3.72 16 10 N -0.66 -28.74 5.07 -303.13 -1.54 -30.28 16 11 C 0.53 25.70 6.89 87.66 0.60 26.30 16 12 O -0.57 -29.14 12.81 -3.09 -0.04 -29.18 16 13 C 0.05 2.79 2.45 -13.03 -0.03 2.76 16 14 H 0.07 3.94 6.99 -2.39 -0.02 3.92 16 15 C -0.52 -27.63 7.55 25.60 0.19 -27.44 16 16 H 0.05 2.61 7.82 -2.91 -0.02 2.59 16 17 C 0.04 1.98 5.45 84.66 0.46 2.44 16 18 N -0.90 -49.44 12.77 21.45 0.27 -49.16 16 19 Si 0.95 42.48 29.54 68.60 2.03 44.50 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 21 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 22 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 23 C -0.04 -1.97 4.31 -19.87 -0.09 -2.06 16 24 C -0.11 -5.11 8.28 22.27 0.18 -4.93 16 25 C -0.13 -5.15 10.05 22.27 0.22 -4.93 16 26 C -0.14 -4.84 10.05 22.27 0.22 -4.61 16 27 C -0.13 -4.70 10.05 22.27 0.22 -4.48 16 28 C -0.14 -6.34 9.67 22.27 0.22 -6.12 16 29 H 0.07 1.14 7.68 -2.39 -0.02 1.13 16 30 H 0.11 1.91 8.14 -2.38 -0.02 1.89 16 31 H 0.06 1.13 7.65 -2.39 -0.02 1.11 16 32 H 0.16 2.90 6.30 -2.91 -0.02 2.88 16 33 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 34 H 0.08 0.94 8.09 -2.39 -0.02 0.92 16 35 H 0.08 1.00 8.08 -2.39 -0.02 0.98 16 36 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 37 H 0.12 5.03 6.19 -2.91 -0.02 5.01 16 38 H 0.42 17.96 8.52 -92.70 -0.79 17.17 16 39 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 40 H 0.09 4.49 7.91 -2.91 -0.02 4.46 16 41 H 0.14 4.31 8.06 -2.91 -0.02 4.28 16 42 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 43 H 0.14 4.16 8.06 -2.91 -0.02 4.14 16 44 H 0.11 4.77 7.95 -2.91 -0.02 4.74 16 Total: -1.00 -67.71 372.09 4.93 -62.78 By element: Atomic # 1 Polarization: 42.39 SS G_CDS: 0.23 Total: 42.62 kcal Atomic # 6 Polarization: -34.35 SS G_CDS: 4.92 Total: -29.43 kcal Atomic # 7 Polarization: -78.17 SS G_CDS: -1.26 Total: -79.44 kcal Atomic # 8 Polarization: -40.06 SS G_CDS: -0.98 Total: -41.03 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal Total: -67.71 4.93 -62.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519673735.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.257 kcal (2) G-P(sol) polarization free energy of solvation -67.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds