Wall clock time and date at job start Tue Mar 31 2020 13:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35984 * 117.00138 * 2 1 4 4 C 1.38556 * 120.07801 * 359.97438 * 3 2 1 5 5 C 1.38244 * 120.00855 * 180.02562 * 4 3 2 6 6 C 1.50703 * 119.90463 * 179.97438 * 5 4 3 7 7 C 1.38272 * 120.18238 * 0.02562 * 5 4 3 8 8 C 1.38197 * 120.16428 * 359.67851 * 7 5 4 9 9 C 1.38723 * 119.98095 * 0.61754 * 8 7 5 10 10 N 1.40128 * 120.08870 * 179.67708 * 9 8 7 11 11 C 1.34776 * 120.00204 * 334.49266 * 10 9 8 12 12 O 1.21297 * 119.99805 * 3.86237 * 11 10 9 13 13 C 1.50697 * 120.00112 * 183.86944 * 11 10 9 14 14 H 1.08995 * 109.47488 * 59.99997 * 13 11 10 15 15 C 1.50698 * 109.47153 * 299.99401 * 13 11 10 16 16 H 1.08003 * 119.99803 * 334.90758 * 15 13 11 17 17 C 1.37873 * 120.00214 * 154.90881 * 15 13 11 18 18 N 1.31517 * 119.99941 * 4.74250 * 17 15 13 19 19 Si 1.86801 * 120.00382 * 185.01628 * 17 15 13 20 20 H 1.48500 * 109.47226 * 179.72432 * 19 17 15 21 21 H 1.48494 * 109.47297 * 299.72718 * 19 17 15 22 22 H 1.48506 * 109.46911 * 59.72645 * 19 17 15 23 23 C 1.50705 * 109.46909 * 179.97438 * 13 11 10 24 24 C 1.38232 * 120.00207 * 55.27720 * 23 13 11 25 25 C 1.38235 * 119.99540 * 179.78733 * 24 23 13 26 26 C 1.38234 * 120.00516 * 0.44314 * 25 24 23 27 27 C 1.38234 * 119.99845 * 359.81391 * 26 25 24 28 28 C 1.38237 * 119.99438 * 235.55261 * 23 13 11 29 29 H 1.09000 * 109.46866 * 300.00031 * 1 2 3 30 30 H 1.08998 * 109.47405 * 59.99452 * 1 2 3 31 31 H 1.08997 * 109.47208 * 179.97438 * 1 2 3 32 32 H 1.08001 * 119.99441 * 0.02562 * 4 3 2 33 33 H 1.09003 * 109.46996 * 90.00197 * 6 5 4 34 34 H 1.09003 * 109.46828 * 210.00074 * 6 5 4 35 35 H 1.08994 * 109.47498 * 329.99839 * 6 5 4 36 36 H 1.08007 * 119.92132 * 180.02562 * 7 5 4 37 37 H 1.08000 * 120.00741 * 180.30613 * 8 7 5 38 38 H 0.96995 * 120.00242 * 154.48439 * 10 9 8 39 39 H 0.97000 * 119.99942 * 355.25611 * 18 17 15 40 40 H 1.07998 * 120.00228 * 359.97438 * 24 23 13 41 41 H 1.08006 * 119.99694 * 180.27145 * 25 24 23 42 42 H 1.08005 * 120.00369 * 179.82970 * 26 25 24 43 43 H 1.07997 * 120.00632 * 180.02562 * 27 26 25 44 44 H 1.07998 * 120.00629 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2933 2.3747 -0.0005 5 6 1.9224 3.6057 -0.0011 6 6 1.1011 4.8692 -0.0022 7 6 3.3031 3.6807 -0.0016 8 6 4.0614 2.5254 0.0051 9 6 3.4372 1.2865 -0.0006 10 7 4.2039 0.1136 -0.0006 11 6 5.4563 0.1271 -0.4983 12 8 5.9453 1.1688 -0.8817 13 6 6.2491 -1.1520 -0.5787 14 1 5.7223 -1.8668 -1.2107 15 6 6.4130 -1.7290 0.8038 16 1 6.3679 -1.0824 1.6677 17 6 6.6207 -3.0824 0.9657 18 7 6.7689 -3.8556 -0.0877 19 14 6.6840 -3.8190 2.6812 20 1 6.9102 -5.2833 2.5831 21 1 7.7941 -3.1968 3.4465 22 1 5.3978 -3.5624 3.3778 23 6 7.6062 -0.8656 -1.1682 24 6 8.4222 0.0901 -0.5923 25 6 9.6688 0.3495 -1.1305 26 6 10.0956 -0.3401 -2.2499 27 6 9.2773 -1.2920 -2.8290 28 6 8.0325 -1.5546 -2.2882 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 0.2147 2.3196 -0.0005 33 1 0.9027 5.1745 1.0252 34 1 1.6496 5.6585 -0.5164 35 1 0.1572 4.6886 -0.5163 36 1 3.7903 4.6447 -0.0016 37 1 5.1396 2.5870 0.0097 38 1 3.8333 -0.7081 0.3576 39 1 6.6637 -3.4868 -0.9787 40 1 8.0872 0.6318 0.2798 41 1 10.3082 1.0931 -0.6780 42 1 11.0684 -0.1354 -2.6721 43 1 9.6108 -1.8311 -3.7033 44 1 7.3933 -2.2984 -2.7405 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001519673736.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:22 Heat of formation + Delta-G solvation = -28.992988 kcal Electronic energy + Delta-G solvation = -27223.561753 eV Core-core repulsion = 23491.781619 eV Total energy + Delta-G solvation = -3731.780134 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.51320 -39.24433 -37.99572 -37.22966 -34.47511 -34.06425 -31.34843 -30.77961 -30.02738 -29.95549 -27.90138 -27.39597 -25.64783 -23.69691 -22.45974 -21.77415 -21.58969 -20.70704 -19.54531 -17.89290 -17.35484 -16.96969 -16.17309 -15.88246 -15.79262 -15.41738 -14.62603 -14.47493 -13.99829 -13.91930 -13.84921 -13.79837 -13.61378 -13.51129 -12.99956 -12.64741 -12.44123 -12.30137 -12.23654 -12.07603 -11.94249 -11.61117 -11.36869 -11.20248 -10.96563 -10.90875 -10.80812 -10.35457 -10.23490 -10.15067 -9.85506 -9.09306 -8.79514 -8.63288 -8.35512 -8.02016 -7.67503 -7.36908 -6.59683 -4.37010 1.48561 1.59650 2.27912 2.31930 3.30491 3.32588 3.34945 3.41112 3.54595 3.76380 4.03055 4.37903 4.73570 4.81252 5.00723 5.06397 5.11192 5.14530 5.16505 5.36475 5.44088 5.53901 5.60394 5.65851 5.69075 5.71153 5.81695 5.89845 5.95202 6.05626 6.18805 6.32587 6.39535 6.43366 6.47372 6.58903 6.74849 6.85671 6.89960 6.95884 7.13468 7.28727 7.33425 7.54555 7.59453 7.75317 7.90718 8.10230 8.16039 8.56196 8.92682 9.34923 10.78349 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011189 B = 0.004292 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.793119 B = 6521.869054 C = 8107.189385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.316 6.316 3 C 0.089 3.911 4 C -0.190 4.190 5 C -0.085 4.085 6 C -0.108 4.108 7 C -0.135 4.135 8 C -0.104 4.104 9 C 0.135 3.865 10 N -0.658 5.658 11 C 0.534 3.466 12 O -0.543 6.543 13 C 0.047 3.953 14 H 0.067 0.933 15 C -0.597 4.597 16 H 0.059 0.941 17 C 0.034 3.966 18 N -0.890 5.890 19 Si 1.069 2.931 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.285 1.285 23 C -0.023 4.023 24 C -0.078 4.078 25 C -0.133 4.133 26 C -0.146 4.146 27 C -0.129 4.129 28 C -0.122 4.122 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.098 0.902 32 H 0.126 0.874 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.122 0.878 37 H 0.162 0.838 38 H 0.420 0.580 39 H 0.273 0.727 40 H 0.111 0.889 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.851 9.894 -0.420 13.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.229 6.229 3 C 0.042 3.958 4 C -0.209 4.209 5 C -0.086 4.086 6 C -0.164 4.164 7 C -0.153 4.153 8 C -0.124 4.124 9 C 0.039 3.961 10 N -0.301 5.301 11 C 0.325 3.675 12 O -0.421 6.421 13 C 0.026 3.974 14 H 0.085 0.915 15 C -0.634 4.634 16 H 0.077 0.923 17 C -0.174 4.174 18 N -0.524 5.524 19 Si 0.896 3.104 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.211 1.211 23 C -0.024 4.024 24 C -0.097 4.097 25 C -0.151 4.151 26 C -0.164 4.164 27 C -0.147 4.147 28 C -0.140 4.140 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.116 0.884 32 H 0.144 0.856 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.140 0.860 37 H 0.179 0.821 38 H 0.257 0.743 39 H 0.085 0.915 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.126 0.874 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.113 8.919 0.099 12.752 hybrid contribution -0.683 1.061 -0.638 1.414 sum -9.796 9.980 -0.539 13.995 Atomic orbital electron populations 1.22989 0.78690 1.03729 1.00947 1.86068 1.21088 1.26498 1.89294 1.18714 0.90530 0.84795 1.01724 1.20785 0.99250 0.91325 1.09544 1.19580 0.93990 0.94245 1.00810 1.20714 0.99015 0.94769 1.01931 1.20869 0.92763 0.98230 1.03486 1.21656 1.02647 0.89496 0.98597 1.17375 0.86869 0.88122 1.03782 1.43503 1.14900 1.11029 1.60670 1.21546 0.80198 0.92190 0.73569 1.90498 1.69321 1.33708 1.48570 1.18142 0.89247 0.90485 0.99547 0.91547 1.21555 1.57255 0.95286 0.89285 0.92251 1.25875 0.92488 0.93600 1.05432 1.70801 1.42351 1.39702 0.99514 0.83527 0.76830 0.76435 0.73604 1.20560 1.21215 1.21079 1.20039 0.97289 0.93169 0.91938 1.20763 0.93004 0.96922 0.98964 1.20965 0.96568 1.00409 0.97164 1.20826 0.99290 0.98632 0.97649 1.20889 0.94917 0.98795 1.00087 1.20936 0.96556 1.00149 0.96384 0.92917 0.92971 0.88352 0.85643 0.91497 0.91657 0.92044 0.86031 0.82075 0.74272 0.91456 0.87084 0.87421 0.87523 0.87368 0.87155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.32 -4.74 9.92 -19.69 -0.20 -4.94 16 3 C 0.09 1.43 6.70 -39.07 -0.26 1.17 16 4 C -0.19 -2.55 8.69 -39.46 -0.34 -2.89 16 5 C -0.09 -1.11 5.88 -104.61 -0.62 -1.73 16 6 C -0.11 -1.01 10.01 36.01 0.36 -0.65 16 7 C -0.13 -1.97 9.69 -39.58 -0.38 -2.35 16 8 C -0.10 -1.84 8.79 -39.42 -0.35 -2.19 16 9 C 0.14 2.48 6.47 -83.49 -0.54 1.94 16 10 N -0.66 -13.15 5.20 -9.75 -0.05 -13.20 16 11 C 0.53 11.90 6.83 -10.99 -0.08 11.83 16 12 O -0.54 -12.62 11.66 5.54 0.06 -12.56 16 13 C 0.05 1.11 1.96 -94.08 -0.18 0.93 16 14 H 0.07 1.63 6.64 -51.93 -0.34 1.28 16 15 C -0.60 -15.08 7.79 -34.44 -0.27 -15.35 16 16 H 0.06 1.52 7.81 -52.48 -0.41 1.11 16 17 C 0.03 0.87 5.45 -17.82 -0.10 0.78 16 18 N -0.89 -24.46 13.63 55.43 0.76 -23.70 16 19 Si 1.07 23.45 29.91 -169.99 -5.08 18.36 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 23 C -0.02 -0.54 4.39 -104.62 -0.46 -1.00 16 24 C -0.08 -1.76 8.03 -39.58 -0.32 -2.08 16 25 C -0.13 -2.63 10.05 -39.58 -0.40 -3.03 16 26 C -0.15 -2.72 10.05 -39.58 -0.40 -3.12 16 27 C -0.13 -2.51 10.05 -39.58 -0.40 -2.91 16 28 C -0.12 -2.68 9.05 -39.58 -0.36 -3.03 16 29 H 0.05 0.45 7.66 -51.93 -0.40 0.06 16 30 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 31 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.13 1.33 6.30 -52.49 -0.33 1.00 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 35 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 36 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 37 H 0.16 3.15 5.52 -52.49 -0.29 2.86 16 38 H 0.42 8.20 8.18 -40.82 -0.33 7.86 16 39 H 0.27 7.40 5.64 -40.82 -0.23 7.17 16 40 H 0.11 2.54 7.65 -52.49 -0.40 2.14 16 41 H 0.11 1.82 8.06 -52.48 -0.42 1.39 16 42 H 0.11 1.65 8.06 -52.48 -0.42 1.22 16 43 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 44 H 0.11 2.34 7.54 -52.49 -0.40 1.94 16 LS Contribution 366.62 15.07 5.52 5.52 Total: -1.00 -29.91 366.62 -8.78 -38.69 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: -5.70 Total: 14.20 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: -4.09 Total: -22.38 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.70 Total: -36.90 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.13 Total: -17.50 kcal Atomic # 14 Polarization: 23.45 SS G_CDS: -5.08 Total: 18.36 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.91 -8.78 -38.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519673736.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.694 kcal (2) G-P(sol) polarization free energy of solvation -29.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds