Wall clock time and date at job start Tue Mar 31 2020 13:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35984 * 117.00138 * 2 1 4 4 C 1.38556 * 120.07801 * 359.97438 * 3 2 1 5 5 C 1.38244 * 120.00855 * 180.02562 * 4 3 2 6 6 C 1.50703 * 119.90463 * 179.97438 * 5 4 3 7 7 C 1.38272 * 120.18238 * 0.02562 * 5 4 3 8 8 C 1.38197 * 120.16428 * 359.67851 * 7 5 4 9 9 C 1.38723 * 119.98095 * 0.61754 * 8 7 5 10 10 N 1.40128 * 120.08870 * 179.67708 * 9 8 7 11 11 C 1.34776 * 120.00204 * 334.49266 * 10 9 8 12 12 O 1.21297 * 119.99805 * 3.86237 * 11 10 9 13 13 C 1.50697 * 120.00112 * 183.86944 * 11 10 9 14 14 H 1.08995 * 109.47488 * 59.99997 * 13 11 10 15 15 C 1.50698 * 109.47153 * 299.99401 * 13 11 10 16 16 H 1.08003 * 119.99803 * 334.90758 * 15 13 11 17 17 C 1.37873 * 120.00214 * 154.90881 * 15 13 11 18 18 N 1.31517 * 119.99941 * 4.74250 * 17 15 13 19 19 Si 1.86801 * 120.00382 * 185.01628 * 17 15 13 20 20 H 1.48500 * 109.47226 * 179.72432 * 19 17 15 21 21 H 1.48494 * 109.47297 * 299.72718 * 19 17 15 22 22 H 1.48506 * 109.46911 * 59.72645 * 19 17 15 23 23 C 1.50705 * 109.46909 * 179.97438 * 13 11 10 24 24 C 1.38232 * 120.00207 * 55.27720 * 23 13 11 25 25 C 1.38235 * 119.99540 * 179.78733 * 24 23 13 26 26 C 1.38234 * 120.00516 * 0.44314 * 25 24 23 27 27 C 1.38234 * 119.99845 * 359.81391 * 26 25 24 28 28 C 1.38237 * 119.99438 * 235.55261 * 23 13 11 29 29 H 1.09000 * 109.46866 * 300.00031 * 1 2 3 30 30 H 1.08998 * 109.47405 * 59.99452 * 1 2 3 31 31 H 1.08997 * 109.47208 * 179.97438 * 1 2 3 32 32 H 1.08001 * 119.99441 * 0.02562 * 4 3 2 33 33 H 1.09003 * 109.46996 * 90.00197 * 6 5 4 34 34 H 1.09003 * 109.46828 * 210.00074 * 6 5 4 35 35 H 1.08994 * 109.47498 * 329.99839 * 6 5 4 36 36 H 1.08007 * 119.92132 * 180.02562 * 7 5 4 37 37 H 1.08000 * 120.00741 * 180.30613 * 8 7 5 38 38 H 0.96995 * 120.00242 * 154.48439 * 10 9 8 39 39 H 0.97000 * 119.99942 * 355.25611 * 18 17 15 40 40 H 1.07998 * 120.00228 * 359.97438 * 24 23 13 41 41 H 1.08006 * 119.99694 * 180.27145 * 25 24 23 42 42 H 1.08005 * 120.00369 * 179.82970 * 26 25 24 43 43 H 1.07997 * 120.00632 * 180.02562 * 27 26 25 44 44 H 1.07998 * 120.00629 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2933 2.3747 -0.0005 5 6 1.9224 3.6057 -0.0011 6 6 1.1011 4.8692 -0.0022 7 6 3.3031 3.6807 -0.0016 8 6 4.0614 2.5254 0.0051 9 6 3.4372 1.2865 -0.0006 10 7 4.2039 0.1136 -0.0006 11 6 5.4563 0.1271 -0.4983 12 8 5.9453 1.1688 -0.8817 13 6 6.2491 -1.1520 -0.5787 14 1 5.7223 -1.8668 -1.2107 15 6 6.4130 -1.7290 0.8038 16 1 6.3679 -1.0824 1.6677 17 6 6.6207 -3.0824 0.9657 18 7 6.7689 -3.8556 -0.0877 19 14 6.6840 -3.8190 2.6812 20 1 6.9102 -5.2833 2.5831 21 1 7.7941 -3.1968 3.4465 22 1 5.3978 -3.5624 3.3778 23 6 7.6062 -0.8656 -1.1682 24 6 8.4222 0.0901 -0.5923 25 6 9.6688 0.3495 -1.1305 26 6 10.0956 -0.3401 -2.2499 27 6 9.2773 -1.2920 -2.8290 28 6 8.0325 -1.5546 -2.2882 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 0.2147 2.3196 -0.0005 33 1 0.9027 5.1745 1.0252 34 1 1.6496 5.6585 -0.5164 35 1 0.1572 4.6886 -0.5163 36 1 3.7903 4.6447 -0.0016 37 1 5.1396 2.5870 0.0097 38 1 3.8333 -0.7081 0.3576 39 1 6.6637 -3.4868 -0.9787 40 1 8.0872 0.6318 0.2798 41 1 10.3082 1.0931 -0.6780 42 1 11.0684 -0.1354 -2.6721 43 1 9.6108 -1.8311 -3.7033 44 1 7.3933 -2.2984 -2.7405 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001519673736.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:21 Heat of formation + Delta-G solvation = -44.852097 kcal Electronic energy + Delta-G solvation = -27224.249456 eV Core-core repulsion = 23491.781619 eV Total energy + Delta-G solvation = -3732.467836 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.89014 -40.71774 -39.52270 -38.40808 -35.96009 -35.92257 -32.87648 -32.25896 -31.64828 -31.10441 -29.26519 -28.55012 -26.87032 -25.57201 -23.74208 -23.34536 -22.93389 -22.12297 -21.21572 -19.39944 -18.98474 -18.15962 -17.78458 -17.44598 -16.98200 -16.61403 -16.18269 -15.99267 -15.64902 -15.51868 -15.18768 -15.09857 -14.75966 -14.59055 -14.49170 -14.23217 -14.10250 -13.85776 -13.32482 -13.23200 -13.16894 -12.96479 -12.82719 -12.61580 -12.37449 -12.17594 -12.00012 -11.94304 -11.92550 -11.79783 -11.22653 -11.00132 -10.62079 -10.44393 -9.65990 -9.56061 -9.37292 -8.71878 -8.61765 -6.43163 0.24857 0.40668 0.64147 0.69120 1.54217 1.60428 1.72573 1.80428 2.15083 2.37681 2.54484 2.78350 3.04840 3.19560 3.81293 3.91893 4.01102 4.12271 4.18844 4.22955 4.31569 4.33047 4.35172 4.36771 4.39770 4.57458 4.59465 4.71058 4.77919 4.81774 4.86862 4.88014 4.89491 5.07594 5.17619 5.24507 5.29606 5.33034 5.58210 5.63329 5.67299 5.70976 5.71214 5.88808 5.98541 6.09777 6.28367 6.42121 6.45963 6.54116 7.23993 7.35025 8.72324 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011189 B = 0.004292 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.793119 B = 6521.869054 C = 8107.189385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.341 6.341 3 C 0.090 3.910 4 C -0.186 4.186 5 C -0.072 4.072 6 C -0.106 4.106 7 C -0.142 4.142 8 C -0.121 4.121 9 C 0.090 3.910 10 N -0.653 5.653 11 C 0.530 3.470 12 O -0.560 6.560 13 C 0.048 3.952 14 H 0.047 0.953 15 C -0.595 4.595 16 H 0.048 0.952 17 C -0.007 4.007 18 N -0.916 5.916 19 Si 1.110 2.890 20 H -0.282 1.282 21 H -0.279 1.279 22 H -0.266 1.266 23 C -0.049 4.049 24 C -0.103 4.103 25 C -0.133 4.133 26 C -0.138 4.138 27 C -0.128 4.128 28 C -0.145 4.145 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.114 0.886 32 H 0.161 0.839 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.142 0.858 37 H 0.133 0.867 38 H 0.418 0.582 39 H 0.265 0.735 40 H 0.093 0.907 41 H 0.138 0.862 42 H 0.151 0.849 43 H 0.142 0.858 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.932 11.571 -0.360 15.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.255 6.255 3 C 0.042 3.958 4 C -0.205 4.205 5 C -0.073 4.073 6 C -0.163 4.163 7 C -0.161 4.161 8 C -0.141 4.141 9 C -0.005 4.005 10 N -0.296 5.296 11 C 0.321 3.679 12 O -0.439 6.439 13 C 0.027 3.973 14 H 0.065 0.935 15 C -0.632 4.632 16 H 0.066 0.934 17 C -0.209 4.209 18 N -0.551 5.551 19 Si 0.932 3.068 20 H -0.208 1.208 21 H -0.205 1.205 22 H -0.191 1.191 23 C -0.050 4.050 24 C -0.121 4.121 25 C -0.151 4.151 26 C -0.156 4.156 27 C -0.145 4.145 28 C -0.163 4.163 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.132 0.868 32 H 0.179 0.821 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.160 0.840 37 H 0.151 0.849 38 H 0.254 0.746 39 H 0.076 0.924 40 H 0.111 0.889 41 H 0.156 0.844 42 H 0.168 0.832 43 H 0.159 0.841 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -10.239 10.629 0.159 14.759 hybrid contribution -0.452 0.660 -0.709 1.069 sum -10.692 11.289 -0.550 15.558 Atomic orbital electron populations 1.23350 0.76017 1.05482 1.02506 1.86045 1.23907 1.26401 1.89134 1.18827 0.89769 0.86154 1.01001 1.21207 1.00871 0.90367 1.08082 1.20087 0.93589 0.95945 0.97638 1.20814 0.99227 0.92768 1.03447 1.21117 0.93763 0.97852 1.03320 1.21518 1.01709 0.90782 1.00138 1.17662 0.88193 0.87443 1.07228 1.43307 1.14297 1.11803 1.60152 1.21289 0.81023 0.91494 0.74097 1.90477 1.69966 1.33845 1.49633 1.18049 0.90081 0.90699 0.98510 0.93529 1.21634 1.56538 0.95267 0.89758 0.93405 1.27057 0.91841 0.94231 1.07798 1.70879 1.44550 1.40006 0.99625 0.83009 0.77860 0.75545 0.70402 1.20778 1.20501 1.19073 1.20076 0.97117 0.94553 0.93280 1.20777 0.94633 0.97473 0.99244 1.21345 0.95604 1.00768 0.97366 1.21314 1.00663 0.97077 0.96563 1.21307 0.93710 0.98800 1.00725 1.21086 0.98099 1.00470 0.96660 0.91118 0.91434 0.86757 0.82118 0.89804 0.90583 0.90079 0.83991 0.84906 0.74577 0.92351 0.88871 0.84379 0.83152 0.84062 0.87736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.81 113.37 1.11 1.48 16 2 O -0.34 -10.14 9.92 -93.37 -0.93 -11.07 16 3 C 0.09 2.85 6.70 22.60 0.15 3.00 16 4 C -0.19 -4.56 8.69 22.35 0.19 -4.36 16 5 C -0.07 -1.69 5.88 -19.85 -0.12 -1.80 16 6 C -0.11 -1.54 10.01 71.24 0.71 -0.83 16 7 C -0.14 -4.06 9.69 22.27 0.22 -3.85 16 8 C -0.12 -4.51 8.79 22.38 0.20 -4.31 16 9 C 0.09 3.46 6.47 38.18 0.25 3.71 16 10 N -0.65 -28.09 5.20 -303.14 -1.58 -29.66 16 11 C 0.53 25.55 6.83 87.66 0.60 26.15 16 12 O -0.56 -28.02 11.66 -3.08 -0.04 -28.06 16 13 C 0.05 2.44 1.96 -13.03 -0.03 2.41 16 14 H 0.05 2.50 6.64 -2.39 -0.02 2.49 16 15 C -0.59 -31.76 7.79 25.60 0.20 -31.56 16 16 H 0.05 2.60 7.81 -2.91 -0.02 2.58 16 17 C -0.01 -0.39 5.45 84.65 0.46 0.07 16 18 N -0.92 -52.31 13.63 21.45 0.29 -52.01 16 19 Si 1.11 48.20 29.91 68.60 2.05 50.25 16 20 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 21 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 22 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 23 C -0.05 -2.43 4.39 -19.86 -0.09 -2.52 16 24 C -0.10 -4.82 8.03 22.27 0.18 -4.64 16 25 C -0.13 -5.14 10.05 22.27 0.22 -4.92 16 26 C -0.14 -4.84 10.05 22.27 0.22 -4.61 16 27 C -0.13 -4.82 10.05 22.27 0.22 -4.60 16 28 C -0.14 -6.57 9.05 22.27 0.20 -6.37 16 29 H 0.07 1.01 7.66 -2.39 -0.02 0.99 16 30 H 0.07 1.00 7.66 -2.39 -0.02 0.98 16 31 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.16 2.73 6.30 -2.91 -0.02 2.71 16 33 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.08 0.99 8.08 -2.39 -0.02 0.97 16 35 H 0.08 0.91 8.08 -2.39 -0.02 0.89 16 36 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 37 H 0.13 5.65 5.52 -2.91 -0.02 5.63 16 38 H 0.42 17.65 8.18 -92.71 -0.76 16.89 16 39 H 0.27 15.18 5.64 -92.71 -0.52 14.66 16 40 H 0.09 4.56 7.65 -2.91 -0.02 4.54 16 41 H 0.14 4.39 8.06 -2.91 -0.02 4.37 16 42 H 0.15 3.95 8.06 -2.91 -0.02 3.93 16 43 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16 44 H 0.10 4.71 7.54 -2.91 -0.02 4.69 16 Total: -1.00 -69.33 366.62 5.23 -64.10 By element: Atomic # 1 Polarization: 43.50 SS G_CDS: 0.51 Total: 44.02 kcal Atomic # 6 Polarization: -42.47 SS G_CDS: 4.91 Total: -37.56 kcal Atomic # 7 Polarization: -80.39 SS G_CDS: -1.28 Total: -81.68 kcal Atomic # 8 Polarization: -38.16 SS G_CDS: -0.96 Total: -39.13 kcal Atomic # 14 Polarization: 48.20 SS G_CDS: 2.05 Total: 50.25 kcal Total: -69.33 5.23 -64.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519673736.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.249 kcal (2) G-P(sol) polarization free energy of solvation -69.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds