Wall clock time and date at job start Tue Mar 31 2020 13:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38285 * 119.97439 * 2 1 4 4 C 1.38242 * 120.11423 * 180.27076 * 3 2 1 5 5 C 1.38167 * 120.05478 * 359.44904 * 4 3 2 6 6 C 1.50702 * 120.02842 * 180.25502 * 5 4 3 7 7 C 1.38703 * 119.94189 * 0.52215 * 5 4 3 8 8 O 1.35905 * 120.05838 * 179.76779 * 7 5 4 9 9 C 1.42894 * 117.00490 * 179.97438 * 8 7 5 10 10 C 1.50701 * 109.47426 * 180.02562 * 9 8 7 11 11 O 1.21280 * 119.99646 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00183 * 180.02562 * 10 9 8 13 13 C 1.39932 * 120.00241 * 174.89069 * 12 10 9 14 14 C 1.39291 * 119.95116 * 145.77931 * 13 12 10 15 15 C 1.38488 * 120.43106 * 179.97438 * 14 13 12 16 16 C 1.37686 * 120.31902 * 359.97438 * 15 14 13 17 17 C 1.40738 * 119.88586 * 0.02562 * 16 15 14 18 18 C 1.41413 * 120.20513 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99505 * 205.17744 * 18 17 16 20 20 C 1.39925 * 120.00071 * 25.17743 * 18 17 16 21 21 N 1.30834 * 120.00210 * 16.79451 * 20 18 17 22 22 Si 1.86801 * 119.99781 * 196.79044 * 20 18 17 23 23 H 1.48494 * 109.47147 * 60.00414 * 22 20 18 24 24 H 1.48505 * 109.47100 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47359 * 300.00054 * 22 20 18 26 26 C 1.38244 * 119.94624 * 325.50691 * 13 12 10 27 27 C 1.38128 * 119.97514 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.46879 * 90.00178 * 1 2 3 29 29 H 1.08998 * 109.47381 * 209.99902 * 1 2 3 30 30 H 1.08993 * 109.47262 * 330.00841 * 1 2 3 31 31 H 1.08002 * 119.94123 * 359.97438 * 3 2 1 32 32 H 1.08004 * 119.97349 * 179.72038 * 4 3 2 33 33 H 1.09001 * 109.46601 * 270.26990 * 6 5 4 34 34 H 1.08999 * 109.47405 * 30.27055 * 6 5 4 35 35 H 1.09002 * 109.47150 * 150.27736 * 6 5 4 36 36 H 1.09002 * 109.47190 * 300.00406 * 9 8 7 37 37 H 1.09003 * 109.47130 * 59.99974 * 9 8 7 38 38 H 0.97002 * 120.00082 * 354.88962 * 12 10 9 39 39 H 1.07998 * 119.78039 * 359.97438 * 14 13 12 40 40 H 1.08001 * 119.83860 * 180.02562 * 15 14 13 41 41 H 1.07996 * 120.04898 * 179.97438 * 16 15 14 42 42 H 0.96997 * 120.00034 * 179.97438 * 21 20 18 43 43 H 1.08003 * 120.16112 * 0.02562 * 26 13 12 44 44 H 1.07999 * 120.02336 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1978 1.1979 0.0000 4 6 3.5802 1.2013 -0.0057 5 6 4.2752 0.0071 0.0002 6 6 5.7822 0.0115 -0.0002 7 6 3.5846 -1.1958 0.0008 8 8 4.2657 -2.3718 0.0017 9 6 3.4893 -3.5714 0.0029 10 6 4.4090 -4.7652 0.0045 11 8 5.6111 -4.6045 0.0041 12 7 3.8957 -6.0113 0.0052 13 6 4.7453 -7.1181 -0.1013 14 6 4.4342 -8.3003 0.5664 15 6 5.2677 -9.4019 0.4676 16 6 6.4138 -9.3403 -0.2930 17 6 6.7410 -8.1525 -0.9733 18 6 7.9167 -8.0816 -1.7559 19 1 8.3876 -7.1267 -1.9377 20 6 8.4700 -9.2484 -2.2946 21 7 7.7531 -10.3407 -2.3641 22 14 10.2320 -9.2466 -2.9149 23 1 11.1487 -8.8964 -1.8003 24 1 10.5755 -10.5949 -3.4339 25 1 10.3724 -8.2469 -4.0040 26 6 5.8892 -7.0382 -0.8735 27 6 2.1971 -1.1965 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 1.6564 2.1324 -0.0004 32 1 4.1175 2.1382 -0.0102 33 1 6.1452 0.0123 -1.0280 34 1 6.1431 0.9027 0.5133 35 1 6.1483 -0.8773 0.5137 36 1 2.8605 -3.5964 0.8929 37 1 2.8604 -3.5979 -0.8871 38 1 2.9373 -6.1410 0.0795 39 1 3.5372 -8.3582 1.1650 40 1 5.0171 -10.3139 0.9889 41 1 7.0609 -10.2018 -0.3667 42 1 8.1366 -11.1495 -2.7380 43 1 6.1292 -6.1233 -1.3947 44 1 1.6570 -2.1318 0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001521754445.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:00 Heat of formation + Delta-G solvation = -34.675720 kcal Electronic energy + Delta-G solvation = -25860.149567 eV Core-core repulsion = 22128.123012 eV Total energy + Delta-G solvation = -3732.026556 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.62503 -39.59070 -37.81422 -36.94777 -34.49946 -33.96528 -33.08422 -30.49006 -29.84129 -29.39067 -29.35117 -27.28084 -25.31157 -24.92049 -22.89385 -21.53698 -21.22421 -20.85862 -19.65093 -17.98851 -17.63798 -16.91371 -16.41428 -15.89297 -15.75085 -15.49120 -15.05124 -14.66074 -14.43992 -14.34054 -14.00671 -13.80842 -13.36276 -13.12134 -13.03625 -12.95683 -12.84153 -12.61789 -12.18327 -12.01200 -11.87783 -11.66966 -11.46012 -11.25083 -11.11052 -11.07511 -11.02044 -10.91520 -10.49450 -10.17860 -9.69867 -9.45379 -9.08639 -9.01460 -8.90697 -8.20841 -7.47130 -6.96439 -6.72474 -4.34664 1.10480 1.25955 2.46720 2.66555 2.83233 3.09031 3.13022 3.19042 3.31502 3.52176 3.82171 3.96813 4.46271 4.58343 4.63231 4.73214 4.80081 4.91562 4.95638 4.96955 5.07455 5.30250 5.35360 5.42234 5.50765 5.54496 5.70175 5.70211 5.80162 6.11665 6.17664 6.21603 6.32840 6.36190 6.39142 6.60723 6.68026 6.96359 7.01461 7.05412 7.21849 7.25423 7.52830 7.68847 7.93550 8.07670 8.11415 8.22451 8.56472 8.68079 8.92581 8.96713 10.20971 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017997 B = 0.002456 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.475333 B =11396.972922 C =12587.757382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.055 4.055 3 C -0.158 4.158 4 C -0.081 4.081 5 C -0.117 4.117 6 C -0.108 4.108 7 C 0.134 3.866 8 O -0.283 6.283 9 C 0.043 3.957 10 C 0.505 3.495 11 O -0.492 6.492 12 N -0.664 5.664 13 C 0.151 3.849 14 C -0.261 4.261 15 C -0.092 4.092 16 C -0.171 4.171 17 C 0.120 3.880 18 C -0.458 4.458 19 H 0.079 0.921 20 C 0.076 3.924 21 N -0.795 5.795 22 Si 0.909 3.091 23 H -0.263 1.263 24 H -0.279 1.279 25 H -0.265 1.265 26 C -0.210 4.210 27 C -0.209 4.209 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.121 0.879 32 H 0.128 0.872 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.399 0.601 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.120 0.880 42 H 0.281 0.719 43 H 0.106 0.894 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.945 16.809 3.739 21.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.055 4.055 3 C -0.176 4.176 4 C -0.099 4.099 5 C -0.118 4.118 6 C -0.165 4.165 7 C 0.088 3.912 8 O -0.195 6.195 9 C -0.036 4.036 10 C 0.289 3.711 11 O -0.364 6.364 12 N -0.310 5.310 13 C 0.060 3.940 14 C -0.282 4.282 15 C -0.111 4.111 16 C -0.190 4.190 17 C 0.117 3.883 18 C -0.487 4.487 19 H 0.097 0.903 20 C -0.142 4.142 21 N -0.420 5.420 22 Si 0.734 3.266 23 H -0.188 1.188 24 H -0.204 1.204 25 H -0.190 1.190 26 C -0.232 4.232 27 C -0.228 4.228 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.139 0.861 32 H 0.146 0.854 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.233 0.767 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.137 0.863 42 H 0.091 0.909 43 H 0.124 0.876 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.839 16.689 3.627 20.781 hybrid contribution -0.163 -0.269 -0.306 0.439 sum -12.002 16.421 3.321 20.609 Atomic orbital electron populations 1.20802 0.91069 1.02818 1.02444 1.19664 0.95929 0.92497 0.97446 1.20895 0.94083 0.97410 1.05202 1.20864 0.93957 0.96760 0.98281 1.19303 0.96831 0.90140 1.05507 1.20644 0.90238 1.03016 1.02598 1.18886 0.90292 0.85662 0.96310 1.86181 1.33937 1.11157 1.88184 1.22491 0.93921 0.83627 1.03535 1.19932 0.89267 0.83662 0.78206 1.90804 1.14805 1.85157 1.45649 1.43243 1.10086 1.04559 1.73092 1.17383 0.92841 0.85356 0.98400 1.20021 1.03769 0.94544 1.09872 1.20466 0.95502 0.96012 0.99135 1.21360 0.98059 0.99865 0.99743 1.17484 0.91132 0.90344 0.89345 1.19563 1.07608 0.94173 1.27361 0.90336 1.25906 0.99302 0.94858 0.94109 1.69816 1.36480 1.01965 1.33782 0.86349 0.82370 0.78097 0.79810 1.18761 1.20360 1.18982 1.20979 0.96449 1.00552 1.05185 1.21114 0.92706 0.99028 1.09918 0.91002 0.91519 0.91413 0.86059 0.85398 0.91248 0.91839 0.90567 0.89249 0.89042 0.76706 0.89232 0.88958 0.86256 0.90855 0.87630 0.85430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.01 36.00 0.36 -0.39 16 2 C -0.06 -0.52 5.88 -104.65 -0.62 -1.14 16 3 C -0.16 -1.44 9.70 -39.56 -0.38 -1.83 16 4 C -0.08 -0.80 9.70 -39.61 -0.38 -1.18 16 5 C -0.12 -1.42 5.89 -104.47 -0.62 -2.03 16 6 C -0.11 -1.25 9.79 36.01 0.35 -0.90 16 7 C 0.13 1.74 6.66 -39.22 -0.26 1.48 16 8 O -0.28 -4.27 8.71 -39.35 -0.34 -4.61 16 9 C 0.04 0.55 5.22 36.01 0.19 0.74 16 10 C 0.51 8.98 7.63 -10.99 -0.08 8.89 16 11 O -0.49 -11.34 14.25 -14.35 -0.20 -11.54 16 12 N -0.66 -11.45 5.34 -9.91 -0.05 -11.51 16 13 C 0.15 3.40 6.25 -83.77 -0.52 2.87 16 14 C -0.26 -5.67 9.97 -39.10 -0.39 -6.06 16 15 C -0.09 -2.14 10.02 -39.69 -0.40 -2.54 16 16 C -0.17 -4.48 8.69 -38.84 -0.34 -4.82 16 17 C 0.12 3.31 5.57 -106.85 -0.59 2.72 16 18 C -0.46 -12.63 9.05 -37.74 -0.34 -12.97 16 19 H 0.08 2.14 7.90 -52.48 -0.41 1.73 16 20 C 0.08 1.94 5.16 -17.35 -0.09 1.85 16 21 N -0.80 -20.71 10.94 55.55 0.61 -20.10 16 22 Si 0.91 19.21 29.59 -169.99 -5.03 14.18 16 23 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 24 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 25 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 26 C -0.21 -5.47 8.39 -38.68 -0.32 -5.80 16 27 C -0.21 -2.23 8.69 -39.43 -0.34 -2.57 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 30 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 31 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 32 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 35 H 0.08 1.03 7.53 -51.93 -0.39 0.64 16 36 H 0.09 0.85 7.66 -51.93 -0.40 0.46 16 37 H 0.09 0.92 7.66 -51.93 -0.40 0.52 16 38 H 0.40 5.02 8.82 -40.82 -0.36 4.66 16 39 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 40 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 41 H 0.12 3.21 6.17 -52.49 -0.32 2.88 16 42 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 43 H 0.11 2.84 6.48 -52.48 -0.34 2.50 16 44 H 0.13 1.10 6.30 -52.49 -0.33 0.77 16 LS Contribution 372.01 15.07 5.61 5.61 Total: -1.00 -32.56 372.01 -10.09 -42.64 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -5.89 Total: 9.00 kcal Atomic # 6 Polarization: -18.88 SS G_CDS: -4.78 Total: -23.67 kcal Atomic # 7 Polarization: -32.16 SS G_CDS: 0.55 Total: -31.61 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: -0.55 Total: -16.16 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.56 -10.09 -42.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521754445.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.967 kcal (2) G-P(sol) polarization free energy of solvation -32.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds