Wall clock time and date at job start Tue Mar 31 2020 13:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38285 * 119.97439 * 2 1 4 4 C 1.38242 * 120.11423 * 180.27076 * 3 2 1 5 5 C 1.38167 * 120.05478 * 359.44904 * 4 3 2 6 6 C 1.50702 * 120.02842 * 180.25502 * 5 4 3 7 7 C 1.38703 * 119.94189 * 0.52215 * 5 4 3 8 8 O 1.35905 * 120.05838 * 179.76779 * 7 5 4 9 9 C 1.42894 * 117.00490 * 179.97438 * 8 7 5 10 10 C 1.50701 * 109.47426 * 180.02562 * 9 8 7 11 11 O 1.21280 * 119.99646 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00183 * 180.02562 * 10 9 8 13 13 C 1.39932 * 120.00241 * 174.89069 * 12 10 9 14 14 C 1.39291 * 119.95116 * 145.77931 * 13 12 10 15 15 C 1.38488 * 120.43106 * 179.97438 * 14 13 12 16 16 C 1.37686 * 120.31902 * 359.97438 * 15 14 13 17 17 C 1.40738 * 119.88586 * 0.02562 * 16 15 14 18 18 C 1.41413 * 120.20513 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99505 * 205.17744 * 18 17 16 20 20 C 1.39925 * 120.00071 * 25.17743 * 18 17 16 21 21 N 1.30834 * 120.00210 * 16.79451 * 20 18 17 22 22 Si 1.86801 * 119.99781 * 196.79044 * 20 18 17 23 23 H 1.48494 * 109.47147 * 60.00414 * 22 20 18 24 24 H 1.48505 * 109.47100 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47359 * 300.00054 * 22 20 18 26 26 C 1.38244 * 119.94624 * 325.50691 * 13 12 10 27 27 C 1.38128 * 119.97514 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.46879 * 90.00178 * 1 2 3 29 29 H 1.08998 * 109.47381 * 209.99902 * 1 2 3 30 30 H 1.08993 * 109.47262 * 330.00841 * 1 2 3 31 31 H 1.08002 * 119.94123 * 359.97438 * 3 2 1 32 32 H 1.08004 * 119.97349 * 179.72038 * 4 3 2 33 33 H 1.09001 * 109.46601 * 270.26990 * 6 5 4 34 34 H 1.08999 * 109.47405 * 30.27055 * 6 5 4 35 35 H 1.09002 * 109.47150 * 150.27736 * 6 5 4 36 36 H 1.09002 * 109.47190 * 300.00406 * 9 8 7 37 37 H 1.09003 * 109.47130 * 59.99974 * 9 8 7 38 38 H 0.97002 * 120.00082 * 354.88962 * 12 10 9 39 39 H 1.07998 * 119.78039 * 359.97438 * 14 13 12 40 40 H 1.08001 * 119.83860 * 180.02562 * 15 14 13 41 41 H 1.07996 * 120.04898 * 179.97438 * 16 15 14 42 42 H 0.96997 * 120.00034 * 179.97438 * 21 20 18 43 43 H 1.08003 * 120.16112 * 0.02562 * 26 13 12 44 44 H 1.07999 * 120.02336 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1978 1.1979 0.0000 4 6 3.5802 1.2013 -0.0057 5 6 4.2752 0.0071 0.0002 6 6 5.7822 0.0115 -0.0002 7 6 3.5846 -1.1958 0.0008 8 8 4.2657 -2.3718 0.0017 9 6 3.4893 -3.5714 0.0029 10 6 4.4090 -4.7652 0.0045 11 8 5.6111 -4.6045 0.0041 12 7 3.8957 -6.0113 0.0052 13 6 4.7453 -7.1181 -0.1013 14 6 4.4342 -8.3003 0.5664 15 6 5.2677 -9.4019 0.4676 16 6 6.4138 -9.3403 -0.2930 17 6 6.7410 -8.1525 -0.9733 18 6 7.9167 -8.0816 -1.7559 19 1 8.3876 -7.1267 -1.9377 20 6 8.4700 -9.2484 -2.2946 21 7 7.7531 -10.3407 -2.3641 22 14 10.2320 -9.2466 -2.9149 23 1 11.1487 -8.8964 -1.8003 24 1 10.5755 -10.5949 -3.4339 25 1 10.3724 -8.2469 -4.0040 26 6 5.8892 -7.0382 -0.8735 27 6 2.1971 -1.1965 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 1.6564 2.1324 -0.0004 32 1 4.1175 2.1382 -0.0102 33 1 6.1452 0.0123 -1.0280 34 1 6.1431 0.9027 0.5133 35 1 6.1483 -0.8773 0.5137 36 1 2.8605 -3.5964 0.8929 37 1 2.8604 -3.5979 -0.8871 38 1 2.9373 -6.1410 0.0795 39 1 3.5372 -8.3582 1.1650 40 1 5.0171 -10.3139 0.9889 41 1 7.0609 -10.2018 -0.3667 42 1 8.1366 -11.1495 -2.7380 43 1 6.1292 -6.1233 -1.3947 44 1 1.6570 -2.1318 0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001521754445.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:59 Heat of formation + Delta-G solvation = -52.657801 kcal Electronic energy + Delta-G solvation = -25860.929329 eV Core-core repulsion = 22128.123012 eV Total energy + Delta-G solvation = -3732.806317 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.69237 -40.91244 -39.15318 -38.34789 -36.25644 -34.91189 -34.70161 -31.78037 -31.46399 -30.65651 -30.08601 -28.71865 -27.27133 -25.66115 -24.00433 -23.01674 -22.64247 -22.07536 -21.20335 -19.64196 -18.67805 -18.30728 -17.53472 -17.30899 -16.99166 -16.70327 -16.48425 -16.39013 -15.79961 -15.38099 -15.05975 -14.99074 -14.65315 -14.52020 -14.09450 -14.04203 -13.87981 -13.71466 -13.55799 -13.43332 -13.08198 -12.95769 -12.79744 -12.71886 -12.67646 -12.21266 -12.20556 -12.02565 -11.84497 -11.80009 -11.56239 -11.20438 -10.92982 -10.72426 -9.65854 -9.42462 -9.03936 -8.80405 -8.63760 -6.39646 0.34840 0.47017 0.79164 0.97251 1.34338 1.44851 1.47547 1.52159 1.68665 2.19225 2.65074 2.71524 2.75791 3.50042 3.70841 3.79666 3.89812 3.95285 4.04700 4.13309 4.28007 4.35446 4.44859 4.60826 4.62370 4.73650 4.75189 4.79051 4.87679 4.89885 4.98970 5.06663 5.08674 5.17332 5.18529 5.29866 5.36492 5.37851 5.52794 5.66138 5.70654 5.81340 5.88951 6.05187 6.07803 6.31012 6.36137 6.56716 6.65669 6.90748 6.97799 7.21814 8.30768 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017997 B = 0.002456 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.475333 B =11396.972922 C =12587.757382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.059 4.059 3 C -0.158 4.158 4 C -0.082 4.082 5 C -0.145 4.145 6 C -0.105 4.105 7 C 0.106 3.894 8 O -0.319 6.319 9 C 0.054 3.946 10 C 0.501 3.499 11 O -0.554 6.554 12 N -0.649 5.649 13 C 0.158 3.842 14 C -0.246 4.246 15 C -0.091 4.091 16 C -0.197 4.197 17 C 0.088 3.912 18 C -0.504 4.504 19 H 0.061 0.939 20 C 0.039 3.961 21 N -0.820 5.820 22 Si 0.980 3.020 23 H -0.263 1.263 24 H -0.258 1.258 25 H -0.264 1.264 26 C -0.239 4.239 27 C -0.213 4.213 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.148 0.852 32 H 0.150 0.850 33 H 0.063 0.937 34 H 0.084 0.916 35 H 0.045 0.955 36 H 0.130 0.870 37 H 0.124 0.876 38 H 0.426 0.574 39 H 0.137 0.863 40 H 0.126 0.874 41 H 0.105 0.895 42 H 0.290 0.710 43 H 0.080 0.920 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.096 17.727 4.532 24.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.059 4.059 3 C -0.176 4.176 4 C -0.100 4.100 5 C -0.145 4.145 6 C -0.161 4.161 7 C 0.062 3.938 8 O -0.232 6.232 9 C -0.024 4.024 10 C 0.288 3.712 11 O -0.431 6.431 12 N -0.297 5.297 13 C 0.065 3.935 14 C -0.267 4.267 15 C -0.110 4.110 16 C -0.217 4.217 17 C 0.085 3.915 18 C -0.534 4.534 19 H 0.079 0.921 20 C -0.176 4.176 21 N -0.446 5.446 22 Si 0.801 3.199 23 H -0.188 1.188 24 H -0.182 1.182 25 H -0.188 1.188 26 C -0.261 4.261 27 C -0.232 4.232 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.166 0.834 32 H 0.167 0.833 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.064 0.936 36 H 0.147 0.853 37 H 0.141 0.859 38 H 0.265 0.735 39 H 0.155 0.845 40 H 0.144 0.856 41 H 0.123 0.877 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -15.072 17.612 4.430 23.600 hybrid contribution 0.630 -0.441 -0.474 0.904 sum -14.442 17.171 3.956 22.783 Atomic orbital electron populations 1.20863 0.88794 1.03993 1.03317 1.20092 0.97617 0.92105 0.96112 1.21294 0.93885 0.98637 1.03804 1.21147 0.94656 0.96719 0.97454 1.19546 0.96856 0.91097 1.07026 1.20580 0.90879 1.02543 1.02121 1.19169 0.91471 0.84956 0.98246 1.86125 1.35702 1.12337 1.89038 1.22527 0.92301 0.80764 1.06831 1.20946 0.89232 0.84925 0.76077 1.90790 1.17956 1.86080 1.48236 1.43083 1.10938 1.03326 1.72365 1.17460 0.92135 0.87259 0.96630 1.20495 1.04525 0.93178 1.08547 1.20869 0.94273 0.97879 0.97953 1.21329 0.99727 0.99044 1.01580 1.17829 0.91839 0.91616 0.90193 1.19708 1.09248 0.94541 1.29857 0.92123 1.26678 1.03304 0.93925 0.93743 1.69840 1.38121 1.02540 1.34079 0.85293 0.76642 0.78918 0.79073 1.18757 1.18187 1.18819 1.20935 0.98508 0.99400 1.07224 1.21377 0.91705 1.00617 1.09460 0.90128 0.90626 0.90069 0.83424 0.83280 0.91801 0.89695 0.93557 0.85285 0.85850 0.73474 0.84521 0.85633 0.87702 0.89904 0.90150 0.83362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 10.01 71.23 0.71 -0.34 16 2 C -0.06 -0.94 5.88 -19.88 -0.12 -1.05 16 3 C -0.16 -2.44 9.70 22.28 0.22 -2.23 16 4 C -0.08 -1.48 9.70 22.25 0.22 -1.27 16 5 C -0.14 -3.49 5.89 -19.77 -0.12 -3.60 16 6 C -0.10 -2.55 9.79 71.24 0.70 -1.86 16 7 C 0.11 2.71 6.66 22.50 0.15 2.86 16 8 O -0.32 -9.76 8.71 -73.44 -0.64 -10.40 16 9 C 0.05 1.27 5.22 71.24 0.37 1.64 16 10 C 0.50 17.79 7.63 87.66 0.67 18.46 16 11 O -0.55 -26.99 14.25 16.01 0.23 -26.77 16 12 N -0.65 -21.42 5.34 -303.66 -1.62 -23.04 16 13 C 0.16 7.05 6.25 38.10 0.24 7.29 16 14 C -0.25 -10.13 9.97 22.58 0.23 -9.90 16 15 C -0.09 -4.12 10.02 22.20 0.22 -3.90 16 16 C -0.20 -10.66 8.69 22.75 0.20 -10.47 16 17 C 0.09 5.14 5.57 -21.31 -0.12 5.03 16 18 C -0.50 -29.82 9.05 23.46 0.21 -29.60 16 19 H 0.06 3.63 7.90 -2.91 -0.02 3.60 16 20 C 0.04 2.06 5.16 85.25 0.44 2.50 16 21 N -0.82 -44.08 10.94 21.82 0.24 -43.84 16 22 Si 0.98 40.72 29.59 68.60 2.03 42.75 16 23 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 24 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 25 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 26 C -0.24 -13.11 8.39 22.85 0.19 -12.92 16 27 C -0.21 -4.04 8.69 22.37 0.19 -3.84 16 28 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.07 0.58 8.08 -2.39 -0.02 0.57 16 30 H 0.08 0.55 8.08 -2.39 -0.02 0.53 16 31 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 32 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 33 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.08 1.60 8.09 -2.39 -0.02 1.58 16 35 H 0.05 1.38 7.53 -2.39 -0.02 1.36 16 36 H 0.13 2.01 7.66 -2.39 -0.02 2.00 16 37 H 0.12 2.12 7.66 -2.39 -0.02 2.10 16 38 H 0.43 9.22 8.82 -92.71 -0.82 8.40 16 39 H 0.14 4.35 8.06 -2.91 -0.02 4.32 16 40 H 0.13 4.78 8.06 -2.91 -0.02 4.76 16 41 H 0.11 5.87 6.17 -2.91 -0.02 5.86 16 42 H 0.29 13.97 8.30 -92.71 -0.77 13.21 16 43 H 0.08 4.71 6.48 -2.91 -0.02 4.69 16 44 H 0.15 2.01 6.30 -2.91 -0.02 2.00 16 Total: -1.00 -78.35 372.01 5.05 -73.30 By element: Atomic # 1 Polarization: 30.98 SS G_CDS: 0.21 Total: 31.19 kcal Atomic # 6 Polarization: -47.80 SS G_CDS: 4.60 Total: -43.20 kcal Atomic # 7 Polarization: -65.50 SS G_CDS: -1.38 Total: -66.88 kcal Atomic # 8 Polarization: -36.75 SS G_CDS: -0.41 Total: -37.16 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.75 kcal Total: -78.35 5.05 -73.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521754445.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.644 kcal (2) G-P(sol) polarization free energy of solvation -78.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds