Wall clock time and date at job start Tue Mar 31 2020 14:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46969 * 2 1 4 4 C 1.50692 * 109.47606 * 120.00285 * 2 1 3 5 5 C 1.37975 * 120.07453 * 290.95107 * 4 2 1 6 6 C 1.38343 * 120.14966 * 180.02562 * 5 4 2 7 7 C 1.38389 * 120.28928 * 359.97087 * 6 5 4 8 8 C 1.37927 * 120.14976 * 0.02818 * 7 6 5 9 9 C 1.39572 * 120.07716 * 110.96670 * 4 2 1 10 10 C 1.47811 * 120.14305 * 359.96317 * 9 4 2 11 11 O 1.21569 * 120.00058 * 6.21524 * 10 9 4 12 12 N 1.34774 * 120.00232 * 186.21655 * 10 9 4 13 13 C 1.39906 * 120.00433 * 185.43768 * 12 10 9 14 14 C 1.38943 * 120.00326 * 212.67603 * 13 12 10 15 15 C 1.38004 * 119.99480 * 179.73874 * 14 13 12 16 16 C 1.38912 * 120.00346 * 0.50640 * 15 14 13 17 17 O 1.35767 * 119.99546 * 179.74350 * 16 15 14 18 18 C 1.34814 * 117.00391 * 185.92379 * 17 16 15 19 19 H 1.08006 * 119.99702 * 5.24014 * 18 17 16 20 20 C 1.38627 * 120.00635 * 185.23713 * 18 17 16 21 21 N 1.31574 * 119.99974 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00160 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46877 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.46865 * 119.99863 * 22 20 18 25 25 H 1.48498 * 109.46971 * 239.99814 * 22 20 18 26 26 C 1.38908 * 120.00725 * 359.76534 * 16 15 14 27 27 C 1.38006 * 120.00271 * 359.97438 * 26 16 15 28 28 H 1.09005 * 109.47150 * 299.99618 * 1 2 3 29 29 H 1.09001 * 109.47454 * 59.99462 * 1 2 3 30 30 H 1.08997 * 109.47460 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47119 * 240.00647 * 2 1 3 32 32 H 1.09004 * 109.47242 * 60.00607 * 3 2 1 33 33 H 1.08997 * 109.47152 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47472 * 300.00528 * 3 2 1 35 35 H 1.07995 * 119.92900 * 359.97438 * 5 4 2 36 36 H 1.07993 * 119.85558 * 180.02562 * 6 5 4 37 37 H 1.08008 * 119.92258 * 180.02562 * 7 6 5 38 38 H 1.08002 * 120.07074 * 179.71939 * 8 7 6 39 39 H 0.97005 * 119.99959 * 5.43247 * 12 10 9 40 40 H 1.08005 * 120.00375 * 359.97438 * 14 13 12 41 41 H 1.08001 * 119.99415 * 180.22740 * 15 14 13 42 42 H 0.97003 * 120.00395 * 180.02562 * 21 20 18 43 43 H 1.07997 * 120.00470 * 179.97438 * 26 16 15 44 44 H 1.07995 * 119.99797 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2303 5 6 1.8604 -0.1419 2.4757 6 6 2.3215 -0.7925 3.6062 7 6 2.9572 -2.0168 3.4964 8 6 3.1356 -2.5962 2.2575 9 6 2.6731 -1.9448 1.1127 10 6 2.8604 -2.5600 -0.2182 11 8 2.5592 -1.9425 -1.2211 12 7 3.3650 -3.8056 -0.3199 13 6 3.6488 -4.3448 -1.5793 14 6 3.5068 -5.7093 -1.7989 15 6 3.7817 -6.2402 -3.0427 16 6 4.2104 -5.4120 -4.0722 17 8 4.4857 -5.9352 -5.2944 18 6 5.0135 -5.1011 -6.2126 19 1 5.2772 -4.0909 -5.9361 20 6 5.2177 -5.5398 -7.5117 21 7 4.8969 -6.7707 -7.8484 22 14 5.9496 -4.3841 -8.7837 23 1 6.2215 -3.0659 -8.1564 24 1 7.2178 -4.9574 -9.3017 25 1 4.9908 -4.2103 -9.9043 26 6 4.3578 -4.0486 -3.8513 27 6 4.0779 -3.5165 -2.6090 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.6767 1.9564 0.8901 33 1 3.1299 1.4426 -0.0005 34 1 1.6765 1.9565 -0.8899 35 1 1.3655 0.8135 2.5682 36 1 2.1840 -0.3434 4.5786 37 1 3.3145 -2.5198 4.3830 38 1 3.6359 -3.5496 2.1730 39 1 3.5315 -4.3282 0.4802 40 1 3.1777 -6.3540 -0.9973 41 1 3.6677 -7.3004 -3.2144 42 1 5.0401 -7.0779 -8.7573 43 1 4.6915 -3.4047 -4.6515 44 1 4.1930 -2.4566 -2.4372 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001523293209.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:14 Heat of formation + Delta-G solvation = -2.363126 kcal Electronic energy + Delta-G solvation = -26374.128324 eV Core-core repulsion = 22643.502948 eV Total energy + Delta-G solvation = -3730.625376 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.84852 -39.28024 -38.34742 -36.59540 -35.51670 -33.94546 -32.24752 -31.44600 -30.22706 -30.00749 -27.92000 -27.15502 -25.36479 -24.07513 -23.54917 -22.35866 -21.47095 -20.42999 -20.01052 -18.29545 -17.78459 -17.12783 -16.52546 -16.18672 -15.34984 -15.29256 -15.11176 -14.50686 -14.23769 -14.16755 -14.15237 -13.63111 -13.60462 -13.45195 -13.31822 -12.90196 -12.62637 -12.53062 -12.44728 -12.15708 -11.83400 -11.78462 -11.66679 -11.53137 -11.17140 -11.12370 -11.03480 -10.78807 -10.72105 -10.42278 -9.67192 -9.37258 -9.23434 -9.00849 -8.88122 -8.69945 -8.21811 -6.94027 -6.45414 -4.02678 0.63296 1.10760 2.11214 2.20442 2.88541 3.13668 3.15338 3.20820 3.22228 3.67800 3.97470 4.50482 4.51058 4.52594 4.60664 4.73679 5.02184 5.10175 5.14186 5.15690 5.22710 5.23566 5.37734 5.54413 5.58761 5.65122 5.71204 5.77271 5.78697 5.81990 5.97717 6.01171 6.09364 6.13592 6.19946 6.21605 6.24275 6.29832 6.60128 6.67333 6.80307 6.84391 6.98737 7.12464 7.29369 7.42371 7.63977 7.76932 7.99666 8.34834 9.00535 9.69739 10.72564 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.019130 B = 0.002636 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.311823 B =10621.284817 C =11594.880950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.127 4.127 3 C -0.137 4.137 4 C -0.005 4.005 5 C -0.129 4.129 6 C -0.094 4.094 7 C -0.136 4.136 8 C -0.084 4.084 9 C -0.136 4.136 10 C 0.552 3.448 11 O -0.510 6.510 12 N -0.652 5.652 13 C 0.034 3.966 14 C -0.092 4.092 15 C -0.177 4.177 16 C 0.147 3.853 17 O -0.176 6.176 18 C -0.389 4.389 19 H 0.093 0.907 20 C 0.039 3.961 21 N -0.862 5.862 22 Si 0.941 3.059 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.218 4.218 27 C -0.063 4.063 28 H 0.045 0.955 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.159 0.841 32 H 0.046 0.954 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.127 0.873 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.401 0.599 40 H 0.115 0.885 41 H 0.122 0.878 42 H 0.270 0.730 43 H 0.131 0.869 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.672 11.026 21.981 25.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.144 4.144 3 C -0.194 4.194 4 C -0.006 4.006 5 C -0.147 4.147 6 C -0.112 4.112 7 C -0.154 4.154 8 C -0.103 4.103 9 C -0.139 4.139 10 C 0.342 3.658 11 O -0.388 6.388 12 N -0.295 5.295 13 C -0.059 4.059 14 C -0.112 4.112 15 C -0.197 4.197 16 C 0.093 3.907 17 O -0.079 6.079 18 C -0.466 4.466 19 H 0.110 0.890 20 C -0.165 4.165 21 N -0.497 5.497 22 Si 0.765 3.235 23 H -0.190 1.190 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.238 4.238 27 C -0.083 4.083 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.175 0.825 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.145 0.855 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.236 0.764 40 H 0.133 0.867 41 H 0.140 0.860 42 H 0.079 0.921 43 H 0.149 0.851 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.883 11.092 20.967 24.218 hybrid contribution 0.390 0.346 0.044 0.523 sum -4.493 11.438 21.011 24.341 Atomic orbital electron populations 1.21712 0.94557 1.01549 1.01161 1.21512 0.96121 0.96685 1.00085 1.21792 1.00935 0.95427 1.01243 1.20060 0.92925 0.92117 0.95527 1.21052 1.01295 1.00586 0.91766 1.21340 0.96399 0.94880 0.98605 1.21051 1.00778 0.96255 0.97304 1.21305 0.97779 0.99184 0.92048 1.19761 1.04389 0.96872 0.92843 1.18340 0.77031 0.81616 0.88807 1.90366 1.50103 1.60229 1.38150 1.43160 1.62728 1.15610 1.08023 1.17220 1.10263 0.92621 0.85757 1.20344 1.01388 0.92932 0.96577 1.19987 1.08945 0.99402 0.91361 1.19415 0.92742 0.91441 0.87143 1.83985 1.69568 1.37626 1.16734 1.21381 1.39958 0.95953 0.89266 0.88975 1.25291 0.97280 0.96957 0.97013 1.70054 1.44450 1.15574 1.19615 0.85648 0.78580 0.79406 0.79836 1.19018 1.20139 1.20125 1.21092 1.09647 0.95219 0.97838 1.20722 0.96362 0.99116 0.92071 0.93565 0.92329 0.92953 0.82542 0.93465 0.92897 0.92364 0.85530 0.85776 0.85533 0.85612 0.76351 0.86720 0.86010 0.92054 0.85136 0.86060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.44 9.09 37.16 0.34 -1.10 16 2 C -0.13 -1.53 2.84 -91.78 -0.26 -1.79 16 3 C -0.14 -1.41 8.90 37.16 0.33 -1.08 16 4 C -0.01 -0.06 4.82 -104.22 -0.50 -0.56 16 5 C -0.13 -1.19 8.85 -39.64 -0.35 -1.54 16 6 C -0.09 -0.73 10.04 -39.49 -0.40 -1.13 16 7 C -0.14 -1.06 10.03 -39.64 -0.40 -1.46 16 8 C -0.08 -0.78 9.51 -39.18 -0.37 -1.15 16 9 C -0.14 -1.62 5.87 -104.97 -0.62 -2.24 16 10 C 0.55 8.12 7.47 -12.35 -0.09 8.02 16 11 O -0.51 -8.99 10.70 5.30 0.06 -8.93 16 12 N -0.65 -9.04 5.28 -10.69 -0.06 -9.09 16 13 C 0.03 0.59 6.29 -83.65 -0.53 0.07 16 14 C -0.09 -1.59 9.95 -39.41 -0.39 -1.99 16 15 C -0.18 -3.65 9.98 -39.42 -0.39 -4.05 16 16 C 0.15 3.54 6.65 -39.08 -0.26 3.28 16 17 O -0.18 -5.00 9.75 0.04 0.00 -5.00 16 18 C -0.39 -10.90 9.44 30.88 0.29 -10.61 16 19 H 0.09 2.41 5.29 -52.48 -0.28 2.13 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 21 N -0.86 -25.26 13.67 55.48 0.76 -24.50 16 22 Si 0.94 20.65 29.55 -169.99 -5.02 15.62 16 23 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 24 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 25 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 26 C -0.22 -4.88 9.13 -39.42 -0.36 -5.24 16 27 C -0.06 -1.25 8.65 -39.41 -0.34 -1.59 16 28 H 0.05 0.43 7.95 -51.93 -0.41 0.01 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.16 2.37 3.90 -56.32 -0.22 2.15 16 32 H 0.05 0.41 6.94 -51.93 -0.36 0.05 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.13 0.97 7.05 -52.49 -0.37 0.60 16 36 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 37 H 0.13 0.68 8.06 -52.48 -0.42 0.25 16 38 H 0.13 0.87 6.51 -52.49 -0.34 0.53 16 39 H 0.40 4.09 6.94 -40.82 -0.28 3.81 16 40 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 41 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 42 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 43 H 0.13 2.95 5.71 -52.49 -0.30 2.65 16 44 H 0.12 2.36 6.38 -52.49 -0.34 2.02 16 LS Contribution 363.06 15.07 5.47 5.47 Total: -1.00 -32.18 363.06 -8.61 -40.79 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -5.42 Total: 8.83 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: -4.40 Total: -23.19 kcal Atomic # 7 Polarization: -34.29 SS G_CDS: 0.70 Total: -33.59 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: 0.06 Total: -13.93 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.18 -8.61 -40.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001523293209.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.423 kcal (2) G-P(sol) polarization free energy of solvation -32.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds