Wall clock time and date at job start Tue Mar 31 2020 14:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46969 * 2 1 4 4 C 1.50692 * 109.47606 * 120.00285 * 2 1 3 5 5 C 1.37975 * 120.07453 * 290.95107 * 4 2 1 6 6 C 1.38343 * 120.14966 * 180.02562 * 5 4 2 7 7 C 1.38389 * 120.28928 * 359.97087 * 6 5 4 8 8 C 1.37927 * 120.14976 * 0.02818 * 7 6 5 9 9 C 1.39572 * 120.07716 * 110.96670 * 4 2 1 10 10 C 1.47811 * 120.14305 * 359.96317 * 9 4 2 11 11 O 1.21569 * 120.00058 * 6.21524 * 10 9 4 12 12 N 1.34774 * 120.00232 * 186.21655 * 10 9 4 13 13 C 1.39906 * 120.00433 * 185.43768 * 12 10 9 14 14 C 1.38943 * 120.00326 * 212.67603 * 13 12 10 15 15 C 1.38004 * 119.99480 * 179.73874 * 14 13 12 16 16 C 1.38912 * 120.00346 * 0.50640 * 15 14 13 17 17 O 1.35767 * 119.99546 * 179.74350 * 16 15 14 18 18 C 1.34814 * 117.00391 * 185.92379 * 17 16 15 19 19 H 1.08006 * 119.99702 * 5.24014 * 18 17 16 20 20 C 1.38627 * 120.00635 * 185.23713 * 18 17 16 21 21 N 1.31574 * 119.99974 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00160 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46877 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.46865 * 119.99863 * 22 20 18 25 25 H 1.48498 * 109.46971 * 239.99814 * 22 20 18 26 26 C 1.38908 * 120.00725 * 359.76534 * 16 15 14 27 27 C 1.38006 * 120.00271 * 359.97438 * 26 16 15 28 28 H 1.09005 * 109.47150 * 299.99618 * 1 2 3 29 29 H 1.09001 * 109.47454 * 59.99462 * 1 2 3 30 30 H 1.08997 * 109.47460 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47119 * 240.00647 * 2 1 3 32 32 H 1.09004 * 109.47242 * 60.00607 * 3 2 1 33 33 H 1.08997 * 109.47152 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47472 * 300.00528 * 3 2 1 35 35 H 1.07995 * 119.92900 * 359.97438 * 5 4 2 36 36 H 1.07993 * 119.85558 * 180.02562 * 6 5 4 37 37 H 1.08008 * 119.92258 * 180.02562 * 7 6 5 38 38 H 1.08002 * 120.07074 * 179.71939 * 8 7 6 39 39 H 0.97005 * 119.99959 * 5.43247 * 12 10 9 40 40 H 1.08005 * 120.00375 * 359.97438 * 14 13 12 41 41 H 1.08001 * 119.99415 * 180.22740 * 15 14 13 42 42 H 0.97003 * 120.00395 * 180.02562 * 21 20 18 43 43 H 1.07997 * 120.00470 * 179.97438 * 26 16 15 44 44 H 1.07995 * 119.99797 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2303 5 6 1.8604 -0.1419 2.4757 6 6 2.3215 -0.7925 3.6062 7 6 2.9572 -2.0168 3.4964 8 6 3.1356 -2.5962 2.2575 9 6 2.6731 -1.9448 1.1127 10 6 2.8604 -2.5600 -0.2182 11 8 2.5592 -1.9425 -1.2211 12 7 3.3650 -3.8056 -0.3199 13 6 3.6488 -4.3448 -1.5793 14 6 3.5068 -5.7093 -1.7989 15 6 3.7817 -6.2402 -3.0427 16 6 4.2104 -5.4120 -4.0722 17 8 4.4857 -5.9352 -5.2944 18 6 5.0135 -5.1011 -6.2126 19 1 5.2772 -4.0909 -5.9361 20 6 5.2177 -5.5398 -7.5117 21 7 4.8969 -6.7707 -7.8484 22 14 5.9496 -4.3841 -8.7837 23 1 6.2215 -3.0659 -8.1564 24 1 7.2178 -4.9574 -9.3017 25 1 4.9908 -4.2103 -9.9043 26 6 4.3578 -4.0486 -3.8513 27 6 4.0779 -3.5165 -2.6090 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.6767 1.9564 0.8901 33 1 3.1299 1.4426 -0.0005 34 1 1.6765 1.9565 -0.8899 35 1 1.3655 0.8135 2.5682 36 1 2.1840 -0.3434 4.5786 37 1 3.3145 -2.5198 4.3830 38 1 3.6359 -3.5496 2.1730 39 1 3.5315 -4.3282 0.4802 40 1 3.1777 -6.3540 -0.9973 41 1 3.6677 -7.3004 -3.2144 42 1 5.0401 -7.0779 -8.7573 43 1 4.6915 -3.4047 -4.6515 44 1 4.1930 -2.4566 -2.4372 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001523293209.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:13 Heat of formation + Delta-G solvation = -21.028835 kcal Electronic energy + Delta-G solvation = -26374.937730 eV Core-core repulsion = 22643.502948 eV Total energy + Delta-G solvation = -3731.434782 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.94426 -40.72593 -39.62516 -38.12335 -36.48799 -35.25413 -34.19412 -32.34933 -31.87066 -30.73144 -29.45270 -27.99894 -27.31811 -25.15610 -24.29969 -23.90597 -22.89934 -21.52998 -21.01538 -19.98411 -19.23279 -18.54640 -17.99478 -17.02183 -16.60041 -16.31002 -16.26281 -16.13143 -15.68776 -15.50163 -15.34313 -14.94020 -14.90644 -14.66015 -14.38561 -14.25969 -14.05490 -13.59864 -13.40435 -13.31358 -13.22845 -13.09502 -12.91571 -12.72415 -12.49846 -12.46303 -12.15399 -12.11234 -12.03939 -11.55882 -11.36888 -11.12046 -10.59674 -10.08077 -9.95001 -9.81831 -9.65954 -8.61072 -8.48153 -6.14467 -0.18766 0.43608 0.51088 0.59990 1.34608 1.41744 1.52534 1.84304 2.04340 2.17329 2.78337 2.90634 3.15104 3.49222 3.62304 3.76036 3.84220 4.07401 4.10185 4.14014 4.29987 4.34738 4.45986 4.46527 4.49204 4.52750 4.64406 4.73699 4.77150 4.88312 4.93145 4.95942 5.06238 5.07836 5.12872 5.20671 5.25782 5.34242 5.37334 5.42057 5.44482 5.54014 5.56559 5.68423 5.88050 5.99995 6.01122 6.16601 6.47763 6.96891 7.20868 7.76131 8.75021 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.019130 B = 0.002636 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.311823 B =10621.284817 C =11594.880950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.131 4.131 3 C -0.132 4.132 4 C -0.022 4.022 5 C -0.135 4.135 6 C -0.084 4.084 7 C -0.134 4.134 8 C -0.083 4.083 9 C -0.161 4.161 10 C 0.550 3.450 11 O -0.545 6.545 12 N -0.643 5.643 13 C 0.063 3.937 14 C -0.078 4.078 15 C -0.178 4.178 16 C 0.107 3.893 17 O -0.227 6.227 18 C -0.412 4.412 19 H 0.097 0.903 20 C -0.021 4.021 21 N -0.918 5.918 22 Si 1.016 2.984 23 H -0.255 1.255 24 H -0.265 1.265 25 H -0.268 1.268 26 C -0.226 4.226 27 C -0.074 4.074 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.036 0.964 31 H 0.125 0.875 32 H 0.068 0.932 33 H 0.042 0.958 34 H 0.056 0.944 35 H 0.142 0.858 36 H 0.156 0.844 37 H 0.159 0.841 38 H 0.148 0.852 39 H 0.423 0.577 40 H 0.167 0.833 41 H 0.130 0.870 42 H 0.273 0.727 43 H 0.117 0.883 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.977 12.368 26.419 29.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.149 4.149 3 C -0.189 4.189 4 C -0.023 4.023 5 C -0.153 4.153 6 C -0.102 4.102 7 C -0.151 4.151 8 C -0.101 4.101 9 C -0.164 4.164 10 C 0.342 3.658 11 O -0.426 6.426 12 N -0.289 5.289 13 C -0.030 4.030 14 C -0.098 4.098 15 C -0.198 4.198 16 C 0.057 3.943 17 O -0.133 6.133 18 C -0.488 4.488 19 H 0.114 0.886 20 C -0.218 4.218 21 N -0.556 5.556 22 Si 0.835 3.165 23 H -0.179 1.179 24 H -0.190 1.190 25 H -0.193 1.193 26 C -0.246 4.246 27 C -0.094 4.094 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.142 0.858 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.160 0.840 36 H 0.174 0.826 37 H 0.176 0.824 38 H 0.166 0.834 39 H 0.262 0.738 40 H 0.184 0.816 41 H 0.148 0.852 42 H 0.082 0.918 43 H 0.135 0.865 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.197 12.447 25.502 28.849 hybrid contribution 0.352 0.052 -0.865 0.935 sum -4.844 12.499 24.637 28.048 Atomic orbital electron populations 1.21670 0.93968 1.00811 1.02074 1.21365 0.96703 0.97380 0.99430 1.21749 1.00277 0.94666 1.02234 1.20121 0.93733 0.92345 0.96114 1.21253 1.01517 1.01314 0.91217 1.21779 0.94461 0.94564 0.99430 1.21469 0.99761 0.96191 0.97717 1.21586 0.97042 0.99856 0.91627 1.19636 1.07057 0.97772 0.91950 1.18948 0.75866 0.81180 0.89809 1.90412 1.51301 1.61019 1.39831 1.43088 1.62685 1.15874 1.07272 1.17358 1.06408 0.92651 0.86609 1.20770 0.99332 0.93249 0.96413 1.20320 1.08014 0.99696 0.91743 1.19929 0.94754 0.92706 0.86940 1.83944 1.72282 1.38726 1.18350 1.21789 1.40687 0.96311 0.90004 0.88572 1.26522 0.97605 0.98783 0.98909 1.70181 1.47155 1.17859 1.20396 0.84568 0.77958 0.77312 0.76624 1.17896 1.19000 1.19309 1.21074 1.10130 0.94718 0.98663 1.20791 0.97051 0.99611 0.91988 0.91530 0.92493 0.94459 0.85845 0.91324 0.93834 0.92496 0.84011 0.82620 0.82365 0.83429 0.73753 0.81602 0.85215 0.91766 0.86545 0.85931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 9.09 71.98 0.65 -2.05 16 2 C -0.13 -3.12 2.84 -11.54 -0.03 -3.16 16 3 C -0.13 -2.61 8.90 71.98 0.64 -1.97 16 4 C -0.02 -0.47 4.82 -19.61 -0.09 -0.56 16 5 C -0.14 -2.04 8.85 22.23 0.20 -1.84 16 6 C -0.08 -0.91 10.04 22.33 0.22 -0.69 16 7 C -0.13 -1.42 10.03 22.23 0.22 -1.20 16 8 C -0.08 -1.20 9.51 22.53 0.21 -0.99 16 9 C -0.16 -3.53 5.87 -20.09 -0.12 -3.65 16 10 C 0.55 15.58 7.47 86.78 0.65 16.23 16 11 O -0.54 -19.56 10.70 -3.93 -0.04 -19.60 16 12 N -0.64 -16.26 5.28 -306.00 -1.61 -17.87 16 13 C 0.06 2.13 6.29 38.19 0.24 2.37 16 14 C -0.08 -2.50 9.95 22.38 0.22 -2.28 16 15 C -0.18 -7.35 9.98 22.38 0.22 -7.12 16 16 C 0.11 5.43 6.65 22.59 0.15 5.58 16 17 O -0.23 -13.75 9.75 -22.77 -0.22 -13.97 16 18 C -0.41 -24.50 9.44 67.91 0.64 -23.86 16 19 H 0.10 5.37 5.29 -2.91 -0.02 5.36 16 20 C -0.02 -1.18 5.49 84.82 0.47 -0.72 16 21 N -0.92 -56.68 13.67 21.61 0.30 -56.39 16 22 Si 1.02 43.94 29.55 68.60 2.03 45.97 16 23 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 24 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 25 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 26 C -0.23 -10.64 9.13 22.38 0.20 -10.43 16 27 C -0.07 -3.00 8.65 22.38 0.19 -2.81 16 28 H 0.07 1.10 7.95 -2.38 -0.02 1.08 16 29 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.12 3.89 3.90 -71.96 -0.28 3.61 16 32 H 0.07 1.03 6.94 -2.38 -0.02 1.02 16 33 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.14 1.63 7.05 -2.91 -0.02 1.61 16 36 H 0.16 0.72 8.06 -2.91 -0.02 0.70 16 37 H 0.16 0.72 8.06 -2.91 -0.02 0.69 16 38 H 0.15 1.36 6.51 -2.91 -0.02 1.34 16 39 H 0.42 6.96 6.94 -92.70 -0.64 6.31 16 40 H 0.17 3.68 8.06 -2.91 -0.02 3.66 16 41 H 0.13 5.08 8.06 -2.91 -0.02 5.06 16 42 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 43 H 0.12 5.67 5.71 -2.91 -0.02 5.66 16 44 H 0.12 4.91 6.38 -2.91 -0.02 4.89 16 Total: -1.00 -77.17 363.06 5.47 -71.70 By element: Atomic # 1 Polarization: 29.18 SS G_CDS: 0.13 Total: 29.31 kcal Atomic # 6 Polarization: -44.04 SS G_CDS: 4.90 Total: -39.15 kcal Atomic # 7 Polarization: -72.94 SS G_CDS: -1.32 Total: -74.26 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: -0.26 Total: -33.57 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -77.17 5.47 -71.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001523293209.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.668 kcal (2) G-P(sol) polarization free energy of solvation -77.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds