Wall clock time and date at job start Tue Mar 31 2020 14:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47041 * 2 1 4 4 C 1.50695 * 109.47586 * 120.00398 * 2 1 3 5 5 C 1.38385 * 119.92655 * 299.97859 * 4 2 1 6 6 C 1.38340 * 120.29544 * 180.02562 * 5 4 2 7 7 C 1.37976 * 120.14659 * 359.71493 * 6 5 4 8 8 C 1.39571 * 119.85104 * 0.58275 * 7 6 5 9 9 C 1.47814 * 120.14937 * 179.69364 * 8 7 6 10 10 O 1.21565 * 120.00254 * 179.72059 * 9 8 7 11 11 N 1.34773 * 119.99804 * 359.72813 * 9 8 7 12 12 C 1.39908 * 120.00211 * 175.47745 * 11 9 8 13 13 C 1.38949 * 120.00232 * 35.13646 * 12 11 9 14 14 C 1.37989 * 119.99918 * 180.02562 * 13 12 11 15 15 C 1.38914 * 120.00138 * 0.02562 * 14 13 12 16 16 O 1.35780 * 119.99574 * 179.97438 * 15 14 13 17 17 C 1.34816 * 116.99898 * 5.35522 * 16 15 14 18 18 H 1.07999 * 120.00124 * 354.96016 * 17 16 15 19 19 C 1.38637 * 119.99794 * 174.96375 * 17 16 15 20 20 N 1.31570 * 120.00073 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99706 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47006 * 59.99943 * 21 19 17 23 23 H 1.48494 * 109.46687 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46788 * 299.99592 * 21 19 17 25 25 C 1.38916 * 120.00935 * 0.24709 * 15 14 13 26 26 C 1.37997 * 119.99753 * 359.45586 * 25 15 14 27 27 C 1.37929 * 119.92671 * 119.99746 * 4 2 1 28 28 H 1.09001 * 109.46882 * 299.99317 * 1 2 3 29 29 H 1.08998 * 109.47759 * 59.99690 * 1 2 3 30 30 H 1.09000 * 109.47246 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46882 * 240.00683 * 2 1 3 32 32 H 1.09005 * 109.47748 * 300.00669 * 3 2 1 33 33 H 1.09004 * 109.47448 * 60.00500 * 3 2 1 34 34 H 1.09004 * 109.47677 * 180.02562 * 3 2 1 35 35 H 1.07995 * 119.85060 * 0.02562 * 5 4 2 36 36 H 1.07999 * 119.92733 * 180.02562 * 6 5 4 37 37 H 1.08005 * 120.07803 * 180.28024 * 7 6 5 38 38 H 0.97006 * 120.00098 * 355.48013 * 11 9 8 39 39 H 1.08003 * 119.99850 * 359.97438 * 13 12 11 40 40 H 1.07994 * 120.00333 * 180.02562 * 14 13 12 41 41 H 0.96996 * 119.99873 * 180.02562 * 20 19 17 42 42 H 1.07996 * 119.99686 * 179.72906 * 25 15 14 43 43 H 1.08004 * 119.99651 * 180.27016 * 26 25 15 44 44 H 1.08007 * 120.07792 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2303 5 6 1.6976 -0.2362 2.4865 6 6 2.1551 -0.8821 3.6211 7 6 2.9442 -2.0082 3.5068 8 6 3.2908 -2.4882 2.2428 9 6 4.1414 -3.6900 2.1127 10 8 4.4375 -4.1087 1.0105 11 7 4.5887 -4.3216 3.2160 12 6 5.3141 -5.5118 3.0951 13 6 6.1812 -5.6913 2.0243 14 6 6.8962 -6.8655 1.9048 15 6 6.7488 -7.8682 2.8548 16 8 7.4520 -9.0237 2.7369 17 6 8.3565 -9.0906 1.7395 18 1 8.4381 -8.2810 1.0293 19 6 9.1819 -10.1986 1.6254 20 7 9.0828 -11.1847 2.4908 21 14 10.4348 -10.2916 0.2429 22 1 11.3789 -9.1507 0.3530 23 1 11.1875 -11.5677 0.3422 24 1 9.7341 -10.2300 -1.0650 25 6 5.8777 -7.6913 3.9224 26 6 5.1672 -6.5147 4.0454 27 6 2.8253 -1.8317 1.1019 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.6765 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.0764 0.6421 2.5815 36 1 1.8898 -0.5071 4.5985 37 1 3.2970 -2.5142 4.3933 38 1 4.4077 -3.9511 4.0941 39 1 6.2948 -4.9122 1.2850 40 1 7.5704 -7.0049 1.0728 41 1 9.6606 -11.9597 2.4112 42 1 5.7600 -8.4727 4.6585 43 1 4.4932 -6.3754 4.8778 44 1 3.0865 -2.2005 0.1209 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001529648686.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:17 Heat of formation + Delta-G solvation = -37.724329 kcal Electronic energy + Delta-G solvation = -25586.050327 eV Core-core repulsion = 21853.891574 eV Total energy + Delta-G solvation = -3732.158753 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.77807 -40.69027 -39.87189 -38.14892 -36.34329 -35.44378 -34.19248 -32.20810 -31.86619 -31.02821 -29.36773 -27.96608 -27.32619 -25.36674 -24.12914 -23.82316 -22.85275 -22.08344 -20.66884 -19.92166 -19.26494 -18.47333 -18.03155 -17.15436 -16.56063 -16.33219 -16.25177 -16.08420 -15.74977 -15.51679 -15.34664 -14.99611 -14.74527 -14.61987 -14.51408 -14.44952 -14.15452 -13.60762 -13.38922 -13.30986 -13.20584 -12.97987 -12.88453 -12.71116 -12.60095 -12.45906 -12.15832 -12.03602 -11.76633 -11.57233 -11.45602 -11.20463 -10.87876 -10.56467 -9.96009 -9.87294 -9.72888 -8.65234 -8.48229 -6.15082 -0.21649 0.38964 0.49962 0.58087 1.33930 1.43725 1.49699 1.80158 2.03016 2.17184 2.76459 2.87565 3.12884 3.48627 3.57394 3.65548 3.89005 4.06047 4.09039 4.09359 4.18153 4.31684 4.33886 4.45077 4.46850 4.53709 4.62288 4.69995 4.83107 4.83351 4.97880 5.00623 5.03380 5.05876 5.09237 5.19572 5.29571 5.30945 5.31999 5.40439 5.43330 5.46895 5.54952 5.64004 5.67155 5.94250 6.00356 6.12142 6.46035 6.96044 7.12449 7.74584 8.74069 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.024237 B = 0.002140 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.984534 B =13080.571081 C =13929.453497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.061 4.061 3 C -0.141 4.141 4 C -0.087 4.087 5 C -0.085 4.085 6 C -0.118 4.118 7 C -0.088 4.088 8 C -0.147 4.147 9 C 0.548 3.452 10 O -0.570 6.570 11 N -0.642 5.642 12 C 0.058 3.942 13 C -0.076 4.076 14 C -0.229 4.229 15 C 0.108 3.892 16 O -0.225 6.225 17 C -0.415 4.415 18 H 0.096 0.904 19 C -0.020 4.020 20 N -0.916 5.916 21 Si 1.016 2.984 22 H -0.258 1.258 23 H -0.268 1.268 24 H -0.261 1.261 25 C -0.179 4.179 26 C -0.074 4.074 27 C -0.080 4.080 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.046 0.954 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.046 0.954 35 H 0.154 0.846 36 H 0.164 0.836 37 H 0.151 0.849 38 H 0.424 0.576 39 H 0.123 0.877 40 H 0.117 0.883 41 H 0.274 0.726 42 H 0.132 0.868 43 H 0.169 0.831 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.530 27.393 2.625 32.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.079 4.079 3 C -0.198 4.198 4 C -0.088 4.088 5 C -0.103 4.103 6 C -0.136 4.136 7 C -0.107 4.107 8 C -0.150 4.150 9 C 0.338 3.662 10 O -0.450 6.450 11 N -0.288 5.288 12 C -0.036 4.036 13 C -0.096 4.096 14 C -0.249 4.249 15 C 0.057 3.943 16 O -0.131 6.131 17 C -0.491 4.491 18 H 0.114 0.886 19 C -0.218 4.218 20 N -0.554 5.554 21 Si 0.835 3.165 22 H -0.183 1.183 23 H -0.192 1.192 24 H -0.185 1.185 25 C -0.198 4.198 26 C -0.094 4.094 27 C -0.099 4.099 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.171 0.829 36 H 0.181 0.819 37 H 0.169 0.831 38 H 0.264 0.736 39 H 0.141 0.859 40 H 0.135 0.865 41 H 0.083 0.917 42 H 0.150 0.850 43 H 0.187 0.813 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -17.268 26.716 2.043 31.876 hybrid contribution 0.916 -0.640 -0.579 1.258 sum -16.352 26.076 1.464 30.814 Atomic orbital electron populations 1.21847 0.93048 1.01840 1.03112 1.20195 0.96924 0.96577 0.94253 1.21847 1.00732 0.94144 1.03109 1.20022 0.97320 0.94835 0.96574 1.21564 0.97838 0.99760 0.91126 1.21497 0.97003 0.94723 1.00382 1.21609 0.96831 0.96680 0.95548 1.19748 1.02642 0.96502 0.96102 1.18944 0.79503 0.83935 0.83802 1.90761 1.59188 1.67288 1.27726 1.42980 1.53068 1.22550 1.10242 1.17399 0.98149 0.88803 0.99241 1.20928 0.93918 0.96752 0.98046 1.21090 1.06156 0.95687 1.02000 1.19950 0.93042 0.86474 0.94794 1.83937 1.47689 1.31223 1.50278 1.21723 1.14104 1.06849 1.06465 0.88622 1.26531 0.99820 0.94015 1.01416 1.70165 1.39654 1.08266 1.37302 0.84690 0.76779 0.78669 0.76350 1.18278 1.19197 1.18528 1.20338 1.00967 0.99964 0.98568 1.20794 0.98975 0.90007 0.99625 1.21195 0.96036 0.94841 0.97805 0.91114 0.91283 0.93504 0.91390 0.91295 0.91114 0.93467 0.82886 0.81858 0.83105 0.73561 0.85902 0.86511 0.91728 0.85031 0.81330 0.86908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.01 71.98 0.65 -0.75 16 2 C -0.06 -0.78 3.09 -11.54 -0.04 -0.81 16 3 C -0.14 -1.38 9.00 71.98 0.65 -0.74 16 4 C -0.09 -1.39 4.78 -19.90 -0.10 -1.48 16 5 C -0.08 -0.94 8.71 22.33 0.19 -0.74 16 6 C -0.12 -1.19 10.03 22.23 0.22 -0.97 16 7 C -0.09 -1.25 9.54 22.53 0.21 -1.03 16 8 C -0.15 -3.29 5.87 -20.09 -0.12 -3.41 16 9 C 0.55 16.37 7.61 86.78 0.66 17.03 16 10 O -0.57 -22.41 13.78 -3.92 -0.05 -22.47 16 11 N -0.64 -16.82 5.28 -306.00 -1.62 -18.43 16 12 C 0.06 2.00 6.30 38.19 0.24 2.24 16 13 C -0.08 -3.21 8.69 22.38 0.19 -3.02 16 14 C -0.23 -11.05 9.16 22.37 0.20 -10.85 16 15 C 0.11 5.55 6.65 22.59 0.15 5.70 16 16 O -0.22 -13.75 9.76 -22.93 -0.22 -13.98 16 17 C -0.42 -24.93 9.48 67.92 0.64 -24.28 16 18 H 0.10 5.39 5.20 -2.91 -0.02 5.38 16 19 C -0.02 -1.15 5.49 84.83 0.47 -0.69 16 20 N -0.92 -56.66 13.67 21.61 0.30 -56.36 16 21 Si 1.02 44.17 29.55 68.60 2.03 46.20 16 22 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 23 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 24 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 25 C -0.18 -7.45 9.99 22.38 0.22 -7.23 16 26 C -0.07 -2.42 9.96 22.38 0.22 -2.20 16 27 C -0.08 -1.78 9.21 22.53 0.21 -1.57 16 28 H 0.07 0.50 7.38 -2.39 -0.02 0.49 16 29 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.07 1.02 7.87 -2.39 -0.02 1.00 16 32 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 33 H 0.07 0.50 7.38 -2.38 -0.02 0.48 16 34 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.15 0.83 7.08 -2.91 -0.02 0.81 16 36 H 0.16 0.56 8.06 -2.91 -0.02 0.54 16 37 H 0.15 1.26 6.42 -2.91 -0.02 1.24 16 38 H 0.42 7.08 6.87 -92.70 -0.64 6.45 16 39 H 0.12 5.22 6.22 -2.91 -0.02 5.21 16 40 H 0.12 5.79 5.63 -2.91 -0.02 5.78 16 41 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 42 H 0.13 5.17 8.06 -2.91 -0.02 5.15 16 43 H 0.17 3.73 8.06 -2.91 -0.02 3.71 16 44 H 0.11 2.93 7.53 -2.91 -0.02 2.91 16 Total: -1.00 -79.88 368.57 5.72 -74.16 By element: Atomic # 1 Polarization: 25.28 SS G_CDS: 0.40 Total: 25.68 kcal Atomic # 6 Polarization: -39.69 SS G_CDS: 4.90 Total: -34.80 kcal Atomic # 7 Polarization: -73.47 SS G_CDS: -1.32 Total: -74.79 kcal Atomic # 8 Polarization: -36.17 SS G_CDS: -0.28 Total: -36.44 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -79.88 5.72 -74.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001529648686.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.431 kcal (2) G-P(sol) polarization free energy of solvation -79.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds