Wall clock time and date at job start Tue Mar 31 2020 14:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42895 * 114.00660 * 2 1 4 4 C 1.52997 * 109.47891 * 180.02562 * 3 2 1 5 5 C 1.50707 * 109.47144 * 300.00163 * 3 2 1 6 6 O 1.21286 * 120.00162 * 145.51797 * 5 3 2 7 7 N 1.34779 * 119.99428 * 325.52684 * 5 3 2 8 8 C 1.39944 * 119.99878 * 185.13099 * 7 5 3 9 9 C 1.39293 * 119.94244 * 33.43159 * 8 7 5 10 10 C 1.38490 * 120.42358 * 180.26333 * 9 8 7 11 11 C 1.37690 * 120.32288 * 359.43737 * 10 9 8 12 12 C 1.40737 * 119.88290 * 0.28131 * 11 10 9 13 13 C 1.41402 * 120.20924 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00474 * 208.78791 * 13 12 11 15 15 C 1.39935 * 120.00144 * 28.78787 * 13 12 11 16 16 N 1.30829 * 119.99472 * 10.53928 * 15 13 12 17 17 Si 1.86795 * 120.00217 * 190.54442 * 15 13 12 18 18 H 1.48497 * 109.47443 * 94.99402 * 17 15 13 19 19 H 1.48503 * 109.47167 * 214.99232 * 17 15 13 20 20 H 1.48501 * 109.47160 * 334.99165 * 17 15 13 21 21 C 1.38236 * 119.94685 * 213.13787 * 8 7 5 22 22 C 1.50701 * 109.46980 * 59.99407 * 3 2 1 23 23 C 1.38235 * 120.00237 * 276.60615 * 22 3 2 24 24 C 1.38235 * 119.99612 * 179.80832 * 23 22 3 25 25 C 1.38230 * 120.00393 * 0.39938 * 24 23 22 26 26 C 1.38234 * 120.00185 * 359.85712 * 25 24 23 27 27 C 1.38236 * 119.99639 * 359.95302 * 26 25 24 28 28 H 1.09001 * 109.47402 * 300.00224 * 1 2 3 29 29 H 1.09006 * 109.47125 * 60.00100 * 1 2 3 30 30 H 1.08995 * 109.47715 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47497 * 180.02562 * 4 3 2 32 32 H 1.09001 * 109.46635 * 300.00140 * 4 3 2 33 33 H 1.09003 * 109.46881 * 59.99735 * 4 3 2 34 34 H 0.96993 * 120.00629 * 5.12759 * 7 5 3 35 35 H 1.07996 * 119.78976 * 359.97438 * 9 8 7 36 36 H 1.07999 * 119.84022 * 179.72579 * 10 9 8 37 37 H 1.07995 * 120.05472 * 180.25952 * 11 10 9 38 38 H 0.97007 * 119.99449 * 179.97438 * 16 15 13 39 39 H 1.07996 * 120.16347 * 359.97438 * 21 8 7 40 40 H 1.08001 * 120.00083 * 0.02562 * 23 22 3 41 41 H 1.08005 * 120.00013 * 180.23208 * 24 23 22 42 42 H 1.08006 * 120.00277 * 179.83446 * 25 24 23 43 43 H 1.08001 * 120.00623 * 179.97438 * 26 25 24 44 44 H 1.08006 * 120.00425 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 1.5657 2.0533 -1.2305 6 8 1.3802 3.2508 -1.1784 7 7 1.3739 1.3914 -2.3888 8 6 1.0659 2.0989 -3.5563 9 6 1.5985 3.3697 -3.7601 10 6 1.2959 4.0809 -4.9092 11 6 0.4737 3.5341 -5.8689 12 6 -0.0670 2.2487 -5.6793 13 6 -0.9125 1.6807 -6.6601 14 1 -1.6729 0.9700 -6.3717 15 6 -0.7642 2.0395 -8.0045 16 7 0.2775 2.7336 -8.3851 17 14 -2.0533 1.5274 -9.2556 18 1 -3.0321 2.6293 -9.4372 19 1 -1.3940 1.2322 -10.5532 20 1 -2.7585 0.3136 -8.7713 21 6 0.2384 1.5329 -4.5081 22 6 1.5656 2.0533 1.2304 23 6 0.3471 2.7060 1.2398 24 6 -0.0625 3.3887 2.3699 25 6 0.7500 3.4256 3.4876 26 6 1.9708 2.7774 3.4764 27 6 2.3787 2.0913 2.3477 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.9789 2.1803 -0.0002 32 1 3.8574 0.6435 0.8891 33 1 3.8567 0.6438 -0.8909 34 1 1.4495 0.4247 -2.4133 35 1 2.2478 3.8051 -3.0150 36 1 1.7105 5.0673 -5.0556 37 1 0.2440 4.0908 -6.7653 38 1 0.3805 2.9819 -9.3172 39 1 -0.1709 0.5456 -4.3533 40 1 -0.2864 2.6797 0.3655 41 1 -1.0162 3.8956 2.3786 42 1 0.4311 3.9613 4.3696 43 1 2.6058 2.8065 4.3495 44 1 3.3327 1.5851 2.3387 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001533223104.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:47 Heat of formation + Delta-G solvation = -24.645264 kcal Electronic energy + Delta-G solvation = -27295.799126 eV Core-core repulsion = 23564.207523 eV Total energy + Delta-G solvation = -3731.591602 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.02036 -38.95390 -37.66184 -36.97349 -34.48807 -33.05489 -33.01143 -31.04170 -29.84468 -29.72167 -28.23535 -26.44169 -25.30884 -24.85690 -22.66739 -22.20732 -21.07366 -20.55821 -19.51519 -17.86934 -17.71849 -17.19876 -16.24375 -15.59816 -15.49859 -15.11974 -14.89214 -14.70124 -14.62322 -14.40674 -14.12322 -13.73094 -13.32057 -13.02267 -12.79965 -12.75460 -12.55887 -12.45618 -12.22641 -11.97621 -11.88788 -11.68769 -11.35206 -11.16785 -11.13451 -11.03878 -10.63182 -10.56875 -10.32427 -10.08449 -9.74483 -9.34213 -9.11611 -8.99561 -8.92173 -8.85826 -7.46147 -6.91377 -6.70106 -4.39935 1.18555 1.34894 2.43881 2.79717 3.07572 3.11007 3.14381 3.27072 3.31731 3.63009 3.82459 3.94549 4.38512 4.64625 4.69438 4.90544 4.91607 4.97914 5.04861 5.29694 5.33144 5.34933 5.45743 5.54410 5.56549 5.66272 5.68445 5.84619 5.93720 5.95372 6.25844 6.34718 6.42586 6.47220 6.50583 6.67165 6.79559 6.89067 6.90343 7.01085 7.03545 7.25143 7.56436 7.63991 7.94579 8.02629 8.10889 8.28582 8.52528 8.65889 8.89236 8.94841 10.24024 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.023503 B = 0.002853 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.072948 B = 9812.103721 C = 9939.817279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.364 6.364 3 C 0.143 3.857 4 C -0.138 4.138 5 C 0.487 3.513 6 O -0.508 6.508 7 N -0.657 5.657 8 C 0.147 3.853 9 C -0.220 4.220 10 C -0.099 4.099 11 C -0.159 4.159 12 C 0.121 3.879 13 C -0.465 4.465 14 H 0.076 0.924 15 C 0.074 3.926 16 N -0.803 5.803 17 Si 0.911 3.089 18 H -0.269 1.269 19 H -0.278 1.278 20 H -0.263 1.263 21 C -0.240 4.240 22 C -0.102 4.102 23 C -0.079 4.079 24 C -0.125 4.125 25 C -0.113 4.113 26 C -0.129 4.129 27 C -0.098 4.098 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.405 0.595 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.122 0.878 38 H 0.279 0.721 39 H 0.095 0.905 40 H 0.122 0.878 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.725 -3.548 17.845 18.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.283 6.283 3 C 0.101 3.899 4 C -0.195 4.195 5 C 0.272 3.728 6 O -0.383 6.383 7 N -0.301 5.301 8 C 0.056 3.944 9 C -0.241 4.241 10 C -0.118 4.118 11 C -0.179 4.179 12 C 0.118 3.882 13 C -0.495 4.495 14 H 0.094 0.906 15 C -0.143 4.143 16 N -0.429 5.429 17 Si 0.736 3.264 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.187 1.187 21 C -0.261 4.261 22 C -0.103 4.103 23 C -0.097 4.097 24 C -0.143 4.143 25 C -0.131 4.131 26 C -0.147 4.147 27 C -0.116 4.116 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.112 0.888 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.240 0.760 35 H 0.119 0.881 36 H 0.110 0.890 37 H 0.139 0.861 38 H 0.090 0.910 39 H 0.113 0.887 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.837 -2.774 17.684 18.124 hybrid contribution -0.702 -0.454 -0.733 1.111 sum 2.135 -3.227 16.952 17.388 Atomic orbital electron populations 1.23076 0.80576 1.03461 1.01318 1.88003 1.20424 1.25160 1.94694 1.20595 0.96064 0.83055 0.90213 1.21828 0.89874 1.03717 1.04059 1.20953 0.78448 0.88533 0.84890 1.90748 1.48645 1.14372 1.84545 1.43553 1.68449 1.10612 1.07489 1.17465 0.98165 0.93373 0.85428 1.20334 1.08092 0.96078 0.99642 1.20615 0.99046 0.98004 0.94099 1.21444 1.01452 0.95876 0.99108 1.17382 0.90088 0.90385 0.90320 1.19512 1.15832 1.23096 0.91097 0.90580 1.25867 0.95264 0.93443 0.99685 1.69799 1.24872 1.29866 1.18372 0.86253 0.80956 0.79837 0.79349 1.19468 1.20308 1.18695 1.20744 1.06095 1.00432 0.98852 1.19804 0.95737 0.99813 0.94944 1.21157 0.95640 0.95084 0.97840 1.21135 1.00169 0.99721 0.93293 1.21179 0.94616 0.99111 0.98236 1.21088 0.96793 0.98675 0.98165 1.21065 0.99374 0.98671 0.92495 0.93043 0.93017 0.88821 0.90012 0.90203 0.90679 0.76014 0.88088 0.89000 0.86056 0.91008 0.88665 0.85989 0.85950 0.86146 0.85986 0.85495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.64 101.05 0.97 1.12 16 2 O -0.36 -4.74 9.63 -35.23 -0.34 -5.08 16 3 C 0.14 1.98 1.00 -92.92 -0.09 1.88 16 4 C -0.14 -1.57 7.91 37.16 0.29 -1.28 16 5 C 0.49 8.52 4.55 -10.98 -0.05 8.47 16 6 O -0.51 -10.59 12.48 5.55 0.07 -10.52 16 7 N -0.66 -11.95 4.49 -9.91 -0.04 -12.00 16 8 C 0.15 3.32 6.27 -83.76 -0.52 2.79 16 9 C -0.22 -5.25 8.66 -39.10 -0.34 -5.58 16 10 C -0.10 -2.40 10.02 -39.69 -0.40 -2.80 16 11 C -0.16 -4.18 8.66 -38.84 -0.34 -4.51 16 12 C 0.12 3.21 5.55 -106.85 -0.59 2.62 16 13 C -0.46 -12.23 9.06 -37.74 -0.34 -12.57 16 14 H 0.08 1.92 7.87 -52.48 -0.41 1.51 16 15 C 0.07 1.85 5.26 -17.34 -0.09 1.75 16 16 N -0.80 -20.75 10.83 55.55 0.60 -20.15 16 17 Si 0.91 18.68 29.57 -169.99 -5.03 13.65 16 18 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 19 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 20 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 21 C -0.24 -5.77 9.70 -38.68 -0.38 -6.14 16 22 C -0.10 -1.38 4.26 -104.62 -0.45 -1.82 16 23 C -0.08 -1.11 6.33 -39.58 -0.25 -1.36 16 24 C -0.13 -1.50 10.05 -39.59 -0.40 -1.89 16 25 C -0.11 -1.18 10.05 -39.59 -0.40 -1.57 16 26 C -0.13 -1.31 10.05 -39.58 -0.40 -1.71 16 27 C -0.10 -1.11 9.13 -39.58 -0.36 -1.47 16 28 H 0.05 0.60 5.89 -51.93 -0.31 0.29 16 29 H 0.05 0.70 6.60 -51.93 -0.34 0.35 16 30 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.08 0.72 6.61 -51.93 -0.34 0.38 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.40 6.39 8.06 -40.82 -0.33 6.06 16 35 H 0.10 2.38 6.40 -52.49 -0.34 2.04 16 36 H 0.09 2.03 8.06 -52.49 -0.42 1.60 16 37 H 0.12 3.28 6.21 -52.49 -0.33 2.95 16 38 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 39 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 40 H 0.12 1.90 6.50 -52.49 -0.34 1.56 16 41 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 42 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 43 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 44 H 0.13 1.16 6.02 -52.48 -0.32 0.84 16 LS Contribution 357.63 15.07 5.39 5.39 Total: -1.00 -30.15 357.63 -9.04 -39.19 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -5.57 Total: 13.59 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: -4.12 Total: -24.08 kcal Atomic # 7 Polarization: -32.70 SS G_CDS: 0.56 Total: -32.14 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -0.27 Total: -15.60 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.65 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.15 -9.04 -39.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001533223104.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.545 kcal (2) G-P(sol) polarization free energy of solvation -30.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds