Wall clock time and date at job start Tue Mar 31 2020 14:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42895 * 114.00660 * 2 1 4 4 C 1.52997 * 109.47891 * 180.02562 * 3 2 1 5 5 C 1.50707 * 109.47144 * 300.00163 * 3 2 1 6 6 O 1.21286 * 120.00162 * 145.51797 * 5 3 2 7 7 N 1.34779 * 119.99428 * 325.52684 * 5 3 2 8 8 C 1.39944 * 119.99878 * 185.13099 * 7 5 3 9 9 C 1.39293 * 119.94244 * 33.43159 * 8 7 5 10 10 C 1.38490 * 120.42358 * 180.26333 * 9 8 7 11 11 C 1.37690 * 120.32288 * 359.43737 * 10 9 8 12 12 C 1.40737 * 119.88290 * 0.28131 * 11 10 9 13 13 C 1.41402 * 120.20924 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00474 * 208.78791 * 13 12 11 15 15 C 1.39935 * 120.00144 * 28.78787 * 13 12 11 16 16 N 1.30829 * 119.99472 * 10.53928 * 15 13 12 17 17 Si 1.86795 * 120.00217 * 190.54442 * 15 13 12 18 18 H 1.48497 * 109.47443 * 94.99402 * 17 15 13 19 19 H 1.48503 * 109.47167 * 214.99232 * 17 15 13 20 20 H 1.48501 * 109.47160 * 334.99165 * 17 15 13 21 21 C 1.38236 * 119.94685 * 213.13787 * 8 7 5 22 22 C 1.50701 * 109.46980 * 59.99407 * 3 2 1 23 23 C 1.38235 * 120.00237 * 276.60615 * 22 3 2 24 24 C 1.38235 * 119.99612 * 179.80832 * 23 22 3 25 25 C 1.38230 * 120.00393 * 0.39938 * 24 23 22 26 26 C 1.38234 * 120.00185 * 359.85712 * 25 24 23 27 27 C 1.38236 * 119.99639 * 359.95302 * 26 25 24 28 28 H 1.09001 * 109.47402 * 300.00224 * 1 2 3 29 29 H 1.09006 * 109.47125 * 60.00100 * 1 2 3 30 30 H 1.08995 * 109.47715 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47497 * 180.02562 * 4 3 2 32 32 H 1.09001 * 109.46635 * 300.00140 * 4 3 2 33 33 H 1.09003 * 109.46881 * 59.99735 * 4 3 2 34 34 H 0.96993 * 120.00629 * 5.12759 * 7 5 3 35 35 H 1.07996 * 119.78976 * 359.97438 * 9 8 7 36 36 H 1.07999 * 119.84022 * 179.72579 * 10 9 8 37 37 H 1.07995 * 120.05472 * 180.25952 * 11 10 9 38 38 H 0.97007 * 119.99449 * 179.97438 * 16 15 13 39 39 H 1.07996 * 120.16347 * 359.97438 * 21 8 7 40 40 H 1.08001 * 120.00083 * 0.02562 * 23 22 3 41 41 H 1.08005 * 120.00013 * 180.23208 * 24 23 22 42 42 H 1.08006 * 120.00277 * 179.83446 * 25 24 23 43 43 H 1.08001 * 120.00623 * 179.97438 * 26 25 24 44 44 H 1.08006 * 120.00425 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 1.5657 2.0533 -1.2305 6 8 1.3802 3.2508 -1.1784 7 7 1.3739 1.3914 -2.3888 8 6 1.0659 2.0989 -3.5563 9 6 1.5985 3.3697 -3.7601 10 6 1.2959 4.0809 -4.9092 11 6 0.4737 3.5341 -5.8689 12 6 -0.0670 2.2487 -5.6793 13 6 -0.9125 1.6807 -6.6601 14 1 -1.6729 0.9700 -6.3717 15 6 -0.7642 2.0395 -8.0045 16 7 0.2775 2.7336 -8.3851 17 14 -2.0533 1.5274 -9.2556 18 1 -3.0321 2.6293 -9.4372 19 1 -1.3940 1.2322 -10.5532 20 1 -2.7585 0.3136 -8.7713 21 6 0.2384 1.5329 -4.5081 22 6 1.5656 2.0533 1.2304 23 6 0.3471 2.7060 1.2398 24 6 -0.0625 3.3887 2.3699 25 6 0.7500 3.4256 3.4876 26 6 1.9708 2.7774 3.4764 27 6 2.3787 2.0913 2.3477 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.9789 2.1803 -0.0002 32 1 3.8574 0.6435 0.8891 33 1 3.8567 0.6438 -0.8909 34 1 1.4495 0.4247 -2.4133 35 1 2.2478 3.8051 -3.0150 36 1 1.7105 5.0673 -5.0556 37 1 0.2440 4.0908 -6.7653 38 1 0.3805 2.9819 -9.3172 39 1 -0.1709 0.5456 -4.3533 40 1 -0.2864 2.6797 0.3655 41 1 -1.0162 3.8956 2.3786 42 1 0.4311 3.9613 4.3696 43 1 2.6058 2.8065 4.3495 44 1 3.3327 1.5851 2.3387 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001533223104.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:46 Heat of formation + Delta-G solvation = -41.019883 kcal Electronic energy + Delta-G solvation = -27296.509183 eV Core-core repulsion = 23564.207523 eV Total energy + Delta-G solvation = -3732.301659 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.25049 -40.25140 -39.00968 -38.40277 -36.20964 -34.84312 -34.02883 -31.93233 -31.78392 -30.76286 -29.89579 -27.41489 -27.22336 -26.01646 -23.83364 -23.29858 -22.89256 -22.06358 -20.89458 -19.50613 -19.06141 -18.30474 -17.54802 -17.17986 -16.78565 -16.55137 -16.45463 -16.07634 -15.85518 -15.52528 -15.27148 -14.97533 -14.77405 -14.59863 -14.11807 -14.08410 -13.71037 -13.65069 -13.46485 -13.39355 -13.09735 -12.87446 -12.83922 -12.77849 -12.55140 -12.35149 -12.13953 -11.94499 -11.91413 -11.57343 -11.34846 -11.15666 -10.84697 -10.45370 -9.83259 -9.79301 -9.42190 -8.76996 -8.59264 -6.40517 0.29127 0.46925 0.76339 0.93474 1.39376 1.46650 1.53087 1.63616 2.00769 2.22167 2.53035 2.76133 2.90981 3.35027 3.50552 3.70268 3.86336 4.07705 4.11217 4.23927 4.33034 4.37781 4.38036 4.52931 4.57416 4.60184 4.67238 4.70948 4.75459 4.95943 4.97773 5.00173 5.05818 5.07988 5.11037 5.13872 5.31684 5.50340 5.55440 5.57537 5.69387 5.72430 5.82954 6.05117 6.06177 6.07091 6.25508 6.54607 6.65826 6.91707 6.93965 7.13586 8.36992 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.023503 B = 0.002853 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.072948 B = 9812.103721 C = 9939.817279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.361 6.361 3 C 0.152 3.848 4 C -0.138 4.138 5 C 0.488 3.512 6 O -0.543 6.543 7 N -0.652 5.652 8 C 0.159 3.841 9 C -0.232 4.232 10 C -0.100 4.100 11 C -0.186 4.186 12 C 0.095 3.905 13 C -0.496 4.496 14 H 0.078 0.922 15 C 0.032 3.968 16 N -0.832 5.832 17 Si 0.986 3.014 18 H -0.264 1.264 19 H -0.268 1.268 20 H -0.257 1.257 21 C -0.251 4.251 22 C -0.121 4.121 23 C -0.104 4.104 24 C -0.138 4.138 25 C -0.112 4.112 26 C -0.125 4.125 27 C -0.101 4.101 28 H 0.052 0.948 29 H 0.030 0.970 30 H 0.119 0.881 31 H 0.079 0.921 32 H 0.110 0.890 33 H 0.076 0.924 34 H 0.417 0.583 35 H 0.103 0.897 36 H 0.110 0.890 37 H 0.107 0.893 38 H 0.287 0.713 39 H 0.108 0.892 40 H 0.093 0.907 41 H 0.131 0.869 42 H 0.150 0.850 43 H 0.156 0.844 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.299 -4.681 19.892 20.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.280 6.280 3 C 0.109 3.891 4 C -0.195 4.195 5 C 0.275 3.725 6 O -0.420 6.420 7 N -0.297 5.297 8 C 0.066 3.934 9 C -0.253 4.253 10 C -0.119 4.119 11 C -0.206 4.206 12 C 0.093 3.907 13 C -0.526 4.526 14 H 0.096 0.904 15 C -0.182 4.182 16 N -0.458 5.458 17 Si 0.807 3.193 18 H -0.189 1.189 19 H -0.193 1.193 20 H -0.181 1.181 21 C -0.272 4.272 22 C -0.122 4.122 23 C -0.122 4.122 24 C -0.156 4.156 25 C -0.129 4.129 26 C -0.143 4.143 27 C -0.119 4.119 28 H 0.071 0.929 29 H 0.049 0.951 30 H 0.137 0.863 31 H 0.098 0.902 32 H 0.128 0.872 33 H 0.095 0.905 34 H 0.255 0.745 35 H 0.121 0.879 36 H 0.128 0.872 37 H 0.125 0.875 38 H 0.098 0.902 39 H 0.126 0.874 40 H 0.111 0.889 41 H 0.149 0.851 42 H 0.168 0.832 43 H 0.174 0.826 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.428 -3.930 19.763 20.440 hybrid contribution -0.854 -0.067 -1.230 1.499 sum 2.574 -3.997 18.534 19.134 Atomic orbital electron populations 1.23155 0.80139 1.04810 1.00370 1.88007 1.20861 1.24634 1.94491 1.20569 0.97455 0.82867 0.88192 1.21918 0.87754 1.04172 1.05682 1.21792 0.76844 0.88338 0.85493 1.90722 1.49829 1.16248 1.85171 1.43513 1.68451 1.11125 1.06636 1.17490 0.96536 0.93062 0.86326 1.20455 1.08574 0.96753 0.99500 1.20828 0.98404 0.98816 0.93835 1.21370 1.03429 0.96340 0.99443 1.17749 0.90678 0.90850 0.91471 1.19789 1.16526 1.24117 0.92196 0.90410 1.26762 0.97114 0.93029 1.01249 1.69867 1.26323 1.30327 1.19329 0.85123 0.77961 0.79568 0.76626 1.18920 1.19275 1.18084 1.20893 1.06551 1.01041 0.98739 1.19869 0.96106 1.00664 0.95574 1.21067 0.96200 0.97139 0.97828 1.21349 1.01125 0.99710 0.93427 1.21557 0.94385 0.98596 0.98391 1.21532 0.96855 0.97159 0.98758 1.21383 0.99850 0.98670 0.91967 0.92903 0.95129 0.86251 0.90172 0.87164 0.90541 0.74544 0.87882 0.87228 0.87539 0.90237 0.87361 0.88891 0.85084 0.83245 0.82608 0.83094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.26 9.64 113.37 1.09 1.36 16 2 O -0.36 -8.92 9.63 -148.98 -1.43 -10.35 16 3 C 0.15 4.04 1.00 -12.28 -0.01 4.02 16 4 C -0.14 -2.86 7.91 71.98 0.57 -2.29 16 5 C 0.49 17.24 4.55 87.66 0.40 17.64 16 6 O -0.54 -23.22 12.48 -3.05 -0.04 -23.26 16 7 N -0.65 -23.96 4.49 -303.64 -1.36 -25.33 16 8 C 0.16 7.33 6.27 38.10 0.24 7.57 16 9 C -0.23 -11.31 8.66 22.58 0.20 -11.11 16 10 C -0.10 -5.03 10.02 22.20 0.22 -4.81 16 11 C -0.19 -10.18 8.66 22.75 0.20 -9.98 16 12 C 0.10 5.24 5.55 -21.31 -0.12 5.12 16 13 C -0.50 -26.82 9.06 23.46 0.21 -26.61 16 14 H 0.08 4.02 7.87 -2.91 -0.02 4.00 16 15 C 0.03 1.63 5.26 85.25 0.45 2.08 16 16 N -0.83 -43.95 10.83 21.82 0.24 -43.71 16 17 Si 0.99 38.36 29.57 68.60 2.03 40.39 16 18 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 19 H -0.27 -9.93 7.11 99.48 0.71 -9.22 16 20 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 21 C -0.25 -12.40 9.70 22.85 0.22 -12.17 16 22 C -0.12 -3.14 4.26 -19.86 -0.08 -3.23 16 23 C -0.10 -2.95 6.33 22.27 0.14 -2.81 16 24 C -0.14 -3.20 10.05 22.27 0.22 -2.98 16 25 C -0.11 -2.01 10.05 22.27 0.22 -1.78 16 26 C -0.13 -2.09 10.05 22.27 0.22 -1.86 16 27 C -0.10 -1.99 9.13 22.27 0.20 -1.79 16 28 H 0.05 1.23 5.89 -2.39 -0.01 1.21 16 29 H 0.03 0.84 6.60 -2.38 -0.02 0.82 16 30 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.11 1.60 6.61 -2.39 -0.02 1.58 16 33 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.42 13.10 8.06 -92.71 -0.75 12.35 16 35 H 0.10 4.95 6.40 -2.91 -0.02 4.94 16 36 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16 37 H 0.11 6.05 6.21 -2.91 -0.02 6.03 16 38 H 0.29 13.71 8.30 -92.70 -0.77 12.94 16 39 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 40 H 0.09 3.09 6.50 -2.91 -0.02 3.07 16 41 H 0.13 2.64 8.06 -2.91 -0.02 2.61 16 42 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 43 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 44 H 0.15 2.15 6.02 -2.91 -0.02 2.13 16 Total: -1.00 -67.62 357.63 4.31 -63.31 By element: Atomic # 1 Polarization: 42.31 SS G_CDS: 0.29 Total: 42.59 kcal Atomic # 6 Polarization: -48.23 SS G_CDS: 4.60 Total: -43.64 kcal Atomic # 7 Polarization: -67.91 SS G_CDS: -1.13 Total: -69.04 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -1.47 Total: -33.62 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 2.03 Total: 40.39 kcal Total: -67.62 4.31 -63.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001533223104.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.287 kcal (2) G-P(sol) polarization free energy of solvation -67.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds