Wall clock time and date at job start Tue Mar 31 2020 14:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 113.99834 * 2 1 4 4 C 1.53003 * 109.47270 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47568 * 59.99789 * 3 2 1 6 6 O 1.21279 * 120.00303 * 212.93991 * 5 3 2 7 7 N 1.34776 * 119.99670 * 32.94176 * 5 3 2 8 8 C 1.39935 * 119.99825 * 184.70310 * 7 5 3 9 9 C 1.39299 * 119.95105 * 144.52193 * 8 7 5 10 10 C 1.38485 * 120.43337 * 179.97438 * 9 8 7 11 11 C 1.37681 * 120.31674 * 0.02562 * 10 9 8 12 12 C 1.40737 * 119.89087 * 0.02562 * 11 10 9 13 13 C 1.41416 * 120.21279 * 179.97438 * 12 11 10 14 14 H 1.07995 * 119.99801 * 147.11117 * 13 12 11 15 15 C 1.39930 * 119.99686 * 327.11367 * 13 12 11 16 16 N 1.30825 * 120.00037 * 0.10940 * 15 13 12 17 17 Si 1.86799 * 119.99742 * 180.10985 * 15 13 12 18 18 H 1.48500 * 109.47201 * 59.99633 * 17 15 13 19 19 H 1.48501 * 109.47271 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47315 * 300.00074 * 17 15 13 21 21 C 1.38241 * 119.94962 * 324.24422 * 8 7 5 22 22 C 1.50707 * 109.47251 * 299.99793 * 3 2 1 23 23 C 1.38234 * 119.99628 * 263.38902 * 22 3 2 24 24 C 1.38241 * 119.99362 * 180.02562 * 23 22 3 25 25 C 1.38230 * 120.00289 * 359.95934 * 24 23 22 26 26 C 1.38239 * 119.99844 * 0.27573 * 25 24 23 27 27 C 1.38227 * 119.99684 * 83.40767 * 22 3 2 28 28 H 1.08999 * 109.47090 * 60.00161 * 1 2 3 29 29 H 1.08997 * 109.46672 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47259 * 300.00125 * 1 2 3 31 31 H 1.09001 * 109.47577 * 180.02562 * 4 3 2 32 32 H 1.09007 * 109.46876 * 299.99523 * 4 3 2 33 33 H 1.09001 * 109.47482 * 59.99298 * 4 3 2 34 34 H 0.96998 * 120.00404 * 4.70108 * 7 5 3 35 35 H 1.07996 * 119.77639 * 359.97438 * 9 8 7 36 36 H 1.07992 * 119.83698 * 180.02562 * 10 9 8 37 37 H 1.08004 * 120.05245 * 179.97438 * 11 10 9 38 38 H 0.97010 * 119.99759 * 180.02562 * 16 15 13 39 39 H 1.08001 * 120.15688 * 359.97438 * 21 8 7 40 40 H 1.07999 * 120.00753 * 359.97438 * 23 22 3 41 41 H 1.08001 * 119.99694 * 179.97438 * 24 23 22 42 42 H 1.08003 * 119.99946 * 179.97438 * 25 24 23 43 43 H 1.08001 * 120.00047 * 179.72602 * 26 25 24 44 44 H 1.07997 * 120.00579 * 0.02562 * 27 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 1.5655 2.0534 1.2304 6 8 1.4070 3.2549 1.1855 7 7 1.3441 1.3870 2.3807 8 6 0.8373 2.0645 3.4953 9 6 -0.0484 1.4211 4.3568 10 6 -0.5557 2.0819 5.4631 11 6 -0.1900 3.3835 5.7233 12 6 0.7031 4.0468 4.8612 13 6 1.0829 5.3839 5.1217 14 1 2.0732 5.7250 4.8585 15 6 0.1755 6.2649 5.7205 16 7 -1.0234 5.8510 6.0414 17 14 0.6761 8.0319 6.0618 18 1 1.0356 8.6999 4.7852 19 1 -0.4563 8.7536 6.6959 20 1 1.8470 8.0471 6.9751 21 6 1.2207 3.3693 3.7431 22 6 1.5656 2.0533 -1.2305 23 6 2.3764 2.0868 -2.3496 24 6 1.9687 2.7733 -3.4781 25 6 0.7500 3.4255 -3.4878 26 6 -0.0586 3.3960 -2.3670 27 6 0.3472 2.7061 -1.2399 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.9788 2.1805 -0.0002 32 1 3.8575 0.6437 0.8892 33 1 3.8568 0.6439 -0.8908 34 1 1.5360 0.4378 2.4361 35 1 -0.3413 0.4003 4.1606 36 1 -1.2414 1.5738 6.1248 37 1 -0.5885 3.8949 6.5870 38 1 -1.6525 6.4619 6.4562 39 1 1.9112 3.8674 3.0785 40 1 3.3286 1.5774 -2.3420 41 1 2.6023 2.7998 -4.3523 42 1 0.4317 3.9621 -4.3694 43 1 -1.0089 3.9093 -2.3730 44 1 -0.2860 2.6806 -0.3654 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001533223105.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:51 Heat of formation + Delta-G solvation = -22.085856 kcal Electronic energy + Delta-G solvation = -27575.298756 eV Core-core repulsion = 23843.818138 eV Total energy + Delta-G solvation = -3731.480618 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.96914 -38.90920 -37.62053 -36.91979 -34.46884 -32.99420 -32.95158 -30.98451 -29.80229 -29.67795 -28.16422 -26.40798 -25.28995 -24.83900 -22.61786 -22.16796 -21.02311 -20.50845 -19.44500 -17.97609 -17.58473 -17.13497 -16.14980 -15.56785 -15.39963 -15.24249 -14.78232 -14.63714 -14.57890 -14.32997 -14.07578 -13.69679 -13.26860 -13.07886 -12.78267 -12.71529 -12.51721 -12.36100 -12.15679 -11.92205 -11.83165 -11.69781 -11.20707 -11.16509 -11.08232 -10.97374 -10.65068 -10.46690 -10.29203 -10.03542 -9.81334 -9.29099 -9.05158 -8.92598 -8.85125 -8.75810 -7.38861 -6.90541 -6.58246 -4.35943 1.24404 1.40883 2.51874 2.84759 3.11256 3.14430 3.17670 3.27175 3.35255 3.66704 3.87605 4.01438 4.43158 4.67811 4.75970 4.96081 4.96993 5.02113 5.10778 5.33492 5.37360 5.39873 5.49380 5.59304 5.60318 5.68619 5.70790 5.90446 5.96267 6.01343 6.22722 6.36177 6.40404 6.49027 6.52953 6.72930 6.80669 6.95082 7.02571 7.04844 7.10273 7.31597 7.55508 7.72751 7.96568 8.10993 8.15810 8.27107 8.62633 8.71437 8.97381 8.99152 10.32906 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014016 B = 0.003718 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.212903 B = 7528.369979 C = 8611.051338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.365 6.365 3 C 0.144 3.856 4 C -0.138 4.138 5 C 0.484 3.516 6 O -0.499 6.499 7 N -0.659 5.659 8 C 0.139 3.861 9 C -0.251 4.251 10 C -0.098 4.098 11 C -0.161 4.161 12 C 0.114 3.886 13 C -0.459 4.459 14 H 0.074 0.926 15 C 0.071 3.929 16 N -0.811 5.811 17 Si 0.914 3.086 18 H -0.266 1.266 19 H -0.279 1.279 20 H -0.265 1.265 21 C -0.201 4.201 22 C -0.102 4.102 23 C -0.099 4.099 24 C -0.129 4.129 25 C -0.113 4.113 26 C -0.124 4.124 27 C -0.079 4.079 28 H 0.050 0.950 29 H 0.091 0.909 30 H 0.053 0.947 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.402 0.598 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.128 0.872 38 H 0.278 0.722 39 H 0.111 0.889 40 H 0.127 0.873 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.664 -9.230 -14.198 17.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.283 6.283 3 C 0.101 3.899 4 C -0.195 4.195 5 C 0.269 3.731 6 O -0.373 6.373 7 N -0.303 5.303 8 C 0.048 3.952 9 C -0.272 4.272 10 C -0.117 4.117 11 C -0.181 4.181 12 C 0.111 3.889 13 C -0.490 4.490 14 H 0.093 0.907 15 C -0.144 4.144 16 N -0.438 5.438 17 Si 0.739 3.261 18 H -0.191 1.191 19 H -0.204 1.204 20 H -0.190 1.190 21 C -0.222 4.222 22 C -0.102 4.102 23 C -0.117 4.117 24 C -0.147 4.147 25 C -0.131 4.131 26 C -0.142 4.142 27 C -0.097 4.097 28 H 0.069 0.931 29 H 0.110 0.890 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.237 0.763 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.145 0.855 38 H 0.089 0.911 39 H 0.129 0.871 40 H 0.145 0.855 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.439 -8.434 -14.156 16.833 hybrid contribution -0.175 0.579 0.173 0.629 sum 3.264 -7.855 -13.983 16.367 Atomic orbital electron populations 1.23061 0.80606 1.03264 1.01436 1.87984 1.20428 1.25208 1.94726 1.20581 0.96004 0.83033 0.90285 1.21834 0.89942 1.03781 1.03912 1.20972 0.78750 0.88598 0.84800 1.90799 1.48570 1.13712 1.84227 1.43468 1.63571 1.12706 1.10595 1.17490 0.97141 0.93319 0.87257 1.20114 1.06360 0.99546 1.01176 1.20528 0.99280 0.95463 0.96468 1.21586 1.02586 0.92657 1.01222 1.17552 0.90220 0.92470 0.88627 1.19484 1.00017 0.94667 1.34792 0.90750 1.25844 0.94384 1.01073 0.93051 1.69754 1.05002 1.36855 1.32187 0.86273 0.78876 0.81504 0.79440 1.19093 1.20400 1.19008 1.21195 1.07391 0.94288 0.99312 1.19779 0.95711 0.99874 0.94881 1.21047 0.99352 0.98764 0.92488 1.21081 0.96770 0.98705 0.98176 1.21178 0.94658 0.99096 0.98209 1.21145 1.00266 0.99498 0.93272 1.21163 0.95653 0.95030 0.97900 0.93096 0.89012 0.92889 0.89915 0.90824 0.90246 0.76267 0.89263 0.88964 0.85470 0.91129 0.87087 0.85522 0.86007 0.86146 0.85916 0.86000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.72 101.05 0.98 1.14 16 2 O -0.36 -4.79 9.68 -35.23 -0.34 -5.13 16 3 C 0.14 2.04 0.99 -92.92 -0.09 1.95 16 4 C -0.14 -1.60 7.92 37.16 0.29 -1.30 16 5 C 0.48 8.80 4.66 -10.99 -0.05 8.75 16 6 O -0.50 -11.17 12.38 5.56 0.07 -11.10 16 7 N -0.66 -11.95 4.31 -9.91 -0.04 -11.99 16 8 C 0.14 3.14 6.28 -83.76 -0.53 2.61 16 9 C -0.25 -5.46 9.97 -39.10 -0.39 -5.85 16 10 C -0.10 -2.28 10.02 -39.69 -0.40 -2.68 16 11 C -0.16 -4.22 8.66 -38.84 -0.34 -4.56 16 12 C 0.11 3.14 5.55 -106.85 -0.59 2.55 16 13 C -0.46 -12.70 9.05 -37.74 -0.34 -13.05 16 14 H 0.07 2.00 7.84 -52.49 -0.41 1.59 16 15 C 0.07 1.87 5.39 -17.35 -0.09 1.77 16 16 N -0.81 -21.60 10.62 55.55 0.59 -21.01 16 17 Si 0.91 19.62 29.56 -169.99 -5.02 14.59 16 18 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 19 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 20 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 21 C -0.20 -5.19 8.43 -38.68 -0.33 -5.51 16 22 C -0.10 -1.45 4.25 -104.62 -0.44 -1.89 16 23 C -0.10 -1.18 9.13 -39.58 -0.36 -1.54 16 24 C -0.13 -1.40 10.05 -39.58 -0.40 -1.80 16 25 C -0.11 -1.27 10.05 -39.58 -0.40 -1.67 16 26 C -0.12 -1.61 10.05 -39.58 -0.40 -2.01 16 27 C -0.08 -1.20 6.36 -39.59 -0.25 -1.45 16 28 H 0.05 0.62 5.89 -51.93 -0.31 0.31 16 29 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.05 0.74 6.54 -51.93 -0.34 0.40 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 33 H 0.08 0.73 6.60 -51.93 -0.34 0.39 16 34 H 0.40 6.09 8.27 -40.82 -0.34 5.76 16 35 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 36 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 37 H 0.13 3.45 6.14 -52.48 -0.32 3.13 16 38 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 39 H 0.11 2.97 6.26 -52.49 -0.33 2.65 16 40 H 0.13 1.22 6.02 -52.49 -0.32 0.90 16 41 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 42 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 43 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 44 H 0.12 2.06 6.54 -52.49 -0.34 1.71 16 LS Contribution 357.52 15.07 5.39 5.39 Total: -1.00 -31.07 357.52 -9.05 -40.12 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -5.56 Total: 13.69 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: -4.12 Total: -24.55 kcal Atomic # 7 Polarization: -33.55 SS G_CDS: 0.55 Total: -33.00 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.27 Total: -16.24 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.59 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.07 -9.05 -40.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001533223105.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.033 kcal (2) G-P(sol) polarization free energy of solvation -31.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds