Wall clock time and date at job start Tue Mar 31 2020 14:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 113.99834 * 2 1 4 4 C 1.53003 * 109.47270 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47568 * 59.99789 * 3 2 1 6 6 O 1.21279 * 120.00303 * 212.93991 * 5 3 2 7 7 N 1.34776 * 119.99670 * 32.94176 * 5 3 2 8 8 C 1.39935 * 119.99825 * 184.70310 * 7 5 3 9 9 C 1.39299 * 119.95105 * 144.52193 * 8 7 5 10 10 C 1.38485 * 120.43337 * 179.97438 * 9 8 7 11 11 C 1.37681 * 120.31674 * 0.02562 * 10 9 8 12 12 C 1.40737 * 119.89087 * 0.02562 * 11 10 9 13 13 C 1.41416 * 120.21279 * 179.97438 * 12 11 10 14 14 H 1.07995 * 119.99801 * 147.11117 * 13 12 11 15 15 C 1.39930 * 119.99686 * 327.11367 * 13 12 11 16 16 N 1.30825 * 120.00037 * 0.10940 * 15 13 12 17 17 Si 1.86799 * 119.99742 * 180.10985 * 15 13 12 18 18 H 1.48500 * 109.47201 * 59.99633 * 17 15 13 19 19 H 1.48501 * 109.47271 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47315 * 300.00074 * 17 15 13 21 21 C 1.38241 * 119.94962 * 324.24422 * 8 7 5 22 22 C 1.50707 * 109.47251 * 299.99793 * 3 2 1 23 23 C 1.38234 * 119.99628 * 263.38902 * 22 3 2 24 24 C 1.38241 * 119.99362 * 180.02562 * 23 22 3 25 25 C 1.38230 * 120.00289 * 359.95934 * 24 23 22 26 26 C 1.38239 * 119.99844 * 0.27573 * 25 24 23 27 27 C 1.38227 * 119.99684 * 83.40767 * 22 3 2 28 28 H 1.08999 * 109.47090 * 60.00161 * 1 2 3 29 29 H 1.08997 * 109.46672 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47259 * 300.00125 * 1 2 3 31 31 H 1.09001 * 109.47577 * 180.02562 * 4 3 2 32 32 H 1.09007 * 109.46876 * 299.99523 * 4 3 2 33 33 H 1.09001 * 109.47482 * 59.99298 * 4 3 2 34 34 H 0.96998 * 120.00404 * 4.70108 * 7 5 3 35 35 H 1.07996 * 119.77639 * 359.97438 * 9 8 7 36 36 H 1.07992 * 119.83698 * 180.02562 * 10 9 8 37 37 H 1.08004 * 120.05245 * 179.97438 * 11 10 9 38 38 H 0.97010 * 119.99759 * 180.02562 * 16 15 13 39 39 H 1.08001 * 120.15688 * 359.97438 * 21 8 7 40 40 H 1.07999 * 120.00753 * 359.97438 * 23 22 3 41 41 H 1.08001 * 119.99694 * 179.97438 * 24 23 22 42 42 H 1.08003 * 119.99946 * 179.97438 * 25 24 23 43 43 H 1.08001 * 120.00047 * 179.72602 * 26 25 24 44 44 H 1.07997 * 120.00579 * 0.02562 * 27 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 1.5655 2.0534 1.2304 6 8 1.4070 3.2549 1.1855 7 7 1.3441 1.3870 2.3807 8 6 0.8373 2.0645 3.4953 9 6 -0.0484 1.4211 4.3568 10 6 -0.5557 2.0819 5.4631 11 6 -0.1900 3.3835 5.7233 12 6 0.7031 4.0468 4.8612 13 6 1.0829 5.3839 5.1217 14 1 2.0732 5.7250 4.8585 15 6 0.1755 6.2649 5.7205 16 7 -1.0234 5.8510 6.0414 17 14 0.6761 8.0319 6.0618 18 1 1.0356 8.6999 4.7852 19 1 -0.4563 8.7536 6.6959 20 1 1.8470 8.0471 6.9751 21 6 1.2207 3.3693 3.7431 22 6 1.5656 2.0533 -1.2305 23 6 2.3764 2.0868 -2.3496 24 6 1.9687 2.7733 -3.4781 25 6 0.7500 3.4255 -3.4878 26 6 -0.0586 3.3960 -2.3670 27 6 0.3472 2.7061 -1.2399 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.9788 2.1805 -0.0002 32 1 3.8575 0.6437 0.8892 33 1 3.8568 0.6439 -0.8908 34 1 1.5360 0.4378 2.4361 35 1 -0.3413 0.4003 4.1606 36 1 -1.2414 1.5738 6.1248 37 1 -0.5885 3.8949 6.5870 38 1 -1.6525 6.4619 6.4562 39 1 1.9112 3.8674 3.0785 40 1 3.3286 1.5774 -2.3420 41 1 2.6023 2.7998 -4.3523 42 1 0.4317 3.9621 -4.3694 43 1 -1.0089 3.9093 -2.3730 44 1 -0.2860 2.6806 -0.3654 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001533223105.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:50 Heat of formation + Delta-G solvation = -39.941795 kcal Electronic energy + Delta-G solvation = -27576.073047 eV Core-core repulsion = 23843.818138 eV Total energy + Delta-G solvation = -3732.254910 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.24462 -40.25238 -38.99608 -38.38795 -36.24210 -34.79440 -34.03001 -31.94746 -31.75621 -30.76244 -29.85157 -27.39091 -27.27801 -26.01299 -23.86120 -23.32534 -22.82253 -22.05892 -20.85398 -19.63347 -18.97301 -18.32445 -17.51752 -17.06011 -16.90522 -16.57448 -16.45964 -16.06261 -15.80086 -15.53117 -15.28167 -14.94056 -14.80813 -14.62472 -14.26437 -13.88829 -13.73822 -13.66991 -13.47188 -13.37768 -13.02982 -12.92611 -12.83998 -12.78167 -12.58578 -12.24698 -12.16202 -12.02045 -11.90410 -11.65497 -11.35217 -11.11813 -10.81681 -10.39522 -9.84773 -9.80898 -9.35772 -8.76645 -8.53557 -6.43487 0.27899 0.45089 0.80125 0.95991 1.33881 1.44633 1.46511 1.61248 2.02224 2.20850 2.52981 2.75528 2.89637 3.35239 3.54183 3.68284 3.86270 4.06084 4.09900 4.22143 4.35484 4.39812 4.44068 4.51561 4.56604 4.58017 4.66404 4.70435 4.76300 4.96373 5.00395 5.06055 5.08486 5.10098 5.10872 5.17010 5.32306 5.48650 5.53597 5.55815 5.66088 5.79267 5.85299 6.03603 6.04509 6.11521 6.32582 6.54207 6.67785 6.92854 6.97849 7.18687 8.38879 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014016 B = 0.003718 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.212903 B = 7528.369979 C = 8611.051338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.358 6.358 3 C 0.154 3.846 4 C -0.138 4.138 5 C 0.484 3.516 6 O -0.546 6.546 7 N -0.649 5.649 8 C 0.147 3.853 9 C -0.238 4.238 10 C -0.096 4.096 11 C -0.185 4.185 12 C 0.084 3.916 13 C -0.502 4.502 14 H 0.064 0.936 15 C 0.030 3.970 16 N -0.839 5.839 17 Si 0.985 3.015 18 H -0.269 1.269 19 H -0.262 1.262 20 H -0.256 1.256 21 C -0.225 4.225 22 C -0.121 4.121 23 C -0.101 4.101 24 C -0.125 4.125 25 C -0.112 4.112 26 C -0.140 4.140 27 C -0.106 4.106 28 H 0.048 0.952 29 H 0.122 0.878 30 H 0.031 0.969 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.420 0.580 35 H 0.131 0.869 36 H 0.124 0.876 37 H 0.112 0.888 38 H 0.285 0.715 39 H 0.090 0.910 40 H 0.154 0.846 41 H 0.158 0.842 42 H 0.150 0.850 43 H 0.128 0.872 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.430 -10.857 -16.244 20.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.276 6.276 3 C 0.111 3.889 4 C -0.195 4.195 5 C 0.270 3.730 6 O -0.423 6.423 7 N -0.295 5.295 8 C 0.054 3.946 9 C -0.259 4.259 10 C -0.115 4.115 11 C -0.205 4.205 12 C 0.081 3.919 13 C -0.533 4.533 14 H 0.082 0.918 15 C -0.182 4.182 16 N -0.466 5.466 17 Si 0.806 3.194 18 H -0.194 1.194 19 H -0.186 1.186 20 H -0.180 1.180 21 C -0.246 4.246 22 C -0.122 4.122 23 C -0.118 4.118 24 C -0.142 4.142 25 C -0.130 4.130 26 C -0.158 4.158 27 C -0.124 4.124 28 H 0.066 0.934 29 H 0.140 0.860 30 H 0.050 0.950 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.130 0.870 34 H 0.258 0.742 35 H 0.149 0.851 36 H 0.142 0.858 37 H 0.130 0.870 38 H 0.096 0.904 39 H 0.108 0.892 40 H 0.172 0.828 41 H 0.176 0.824 42 H 0.168 0.832 43 H 0.146 0.854 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.211 -10.123 -16.210 19.570 hybrid contribution -0.455 0.946 0.691 1.257 sum 3.756 -9.177 -15.519 18.416 Atomic orbital electron populations 1.23148 0.80167 1.04795 1.00304 1.87993 1.20831 1.24308 1.94479 1.20526 0.97520 0.82911 0.87958 1.21924 0.87628 1.04058 1.05895 1.21882 0.77093 0.88271 0.85714 1.90780 1.50294 1.16170 1.85020 1.43391 1.63213 1.13348 1.09590 1.17567 0.96340 0.92427 0.88233 1.20533 1.04553 1.01105 0.99746 1.20887 0.99035 0.94377 0.97185 1.21532 1.03650 0.94178 1.01185 1.17875 0.91348 0.93075 0.89604 1.19707 1.00419 0.95867 1.37333 0.91770 1.26692 0.94050 1.05232 0.92200 1.69820 1.05792 1.38511 1.32517 0.85211 0.79180 0.75805 0.79191 1.19383 1.18638 1.18018 1.21128 1.08280 0.96070 0.99154 1.19887 0.95907 1.00649 0.95716 1.21396 0.99862 0.98698 0.91870 1.21547 0.96730 0.97080 0.98871 1.21552 0.94483 0.98652 0.98266 1.21345 1.01209 0.99648 0.93603 1.21050 0.96377 0.97271 0.97711 0.93369 0.85992 0.95026 0.90572 0.90139 0.87024 0.74204 0.85100 0.85767 0.87032 0.90414 0.89230 0.82839 0.82418 0.83223 0.85377 0.89280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.28 9.72 113.37 1.10 1.38 16 2 O -0.36 -8.72 9.68 -148.98 -1.44 -10.17 16 3 C 0.15 4.23 0.99 -12.28 -0.01 4.22 16 4 C -0.14 -2.92 7.92 71.98 0.57 -2.35 16 5 C 0.48 17.96 4.66 87.66 0.41 18.37 16 6 O -0.55 -25.87 12.38 -3.02 -0.04 -25.91 16 7 N -0.65 -23.53 4.31 -303.65 -1.31 -24.84 16 8 C 0.15 6.72 6.28 38.10 0.24 6.96 16 9 C -0.24 -10.10 9.97 22.58 0.23 -9.87 16 10 C -0.10 -4.42 10.02 22.20 0.22 -4.20 16 11 C -0.19 -10.11 8.66 22.75 0.20 -9.91 16 12 C 0.08 4.87 5.55 -21.31 -0.12 4.75 16 13 C -0.50 -29.61 9.05 23.46 0.21 -29.40 16 14 H 0.06 3.73 7.84 -2.91 -0.02 3.70 16 15 C 0.03 1.65 5.39 85.25 0.46 2.11 16 16 N -0.84 -46.37 10.62 21.82 0.23 -46.14 16 17 Si 0.99 41.45 29.56 68.60 2.03 43.48 16 18 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 19 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 20 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 21 C -0.22 -12.28 8.43 22.85 0.19 -12.09 16 22 C -0.12 -3.35 4.25 -19.87 -0.08 -3.44 16 23 C -0.10 -2.14 9.13 22.27 0.20 -1.93 16 24 C -0.12 -2.28 10.05 22.27 0.22 -2.06 16 25 C -0.11 -2.26 10.05 22.27 0.22 -2.04 16 26 C -0.14 -3.66 10.05 22.27 0.22 -3.43 16 27 C -0.11 -3.30 6.36 22.27 0.14 -3.16 16 28 H 0.05 1.16 5.89 -2.39 -0.01 1.15 16 29 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.03 0.87 6.54 -2.39 -0.02 0.85 16 31 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 33 H 0.11 1.64 6.60 -2.39 -0.02 1.62 16 34 H 0.42 12.10 8.27 -92.71 -0.77 11.33 16 35 H 0.13 4.46 8.06 -2.91 -0.02 4.43 16 36 H 0.12 4.85 8.06 -2.91 -0.02 4.83 16 37 H 0.11 6.35 6.14 -2.91 -0.02 6.33 16 38 H 0.29 14.29 8.30 -92.70 -0.77 13.52 16 39 H 0.09 5.19 6.26 -2.91 -0.02 5.17 16 40 H 0.15 2.33 6.02 -2.91 -0.02 2.31 16 41 H 0.16 1.76 8.06 -2.91 -0.02 1.73 16 42 H 0.15 2.09 8.06 -2.91 -0.02 2.06 16 43 H 0.13 3.01 8.06 -2.91 -0.02 2.99 16 44 H 0.09 3.27 6.54 -2.91 -0.02 3.25 16 Total: -1.00 -73.17 357.52 4.37 -68.80 By element: Atomic # 1 Polarization: 40.61 SS G_CDS: 0.27 Total: 40.88 kcal Atomic # 6 Polarization: -50.73 SS G_CDS: 4.63 Total: -46.10 kcal Atomic # 7 Polarization: -69.90 SS G_CDS: -1.08 Total: -70.97 kcal Atomic # 8 Polarization: -34.60 SS G_CDS: -1.48 Total: -36.08 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -73.17 4.37 -68.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001533223105.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.855 kcal (2) G-P(sol) polarization free energy of solvation -73.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds