Wall clock time and date at job start Tue Mar 31 2020 13:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38270 * 119.94205 * 2 1 4 4 C 1.38149 * 120.05231 * 179.72462 * 3 2 1 5 5 C 1.38729 * 119.94471 * 0.28111 * 4 3 2 6 6 O 1.35896 * 120.05642 * 179.97438 * 5 4 3 7 7 C 1.42903 * 117.00170 * 354.72360 * 6 5 4 8 8 H 1.09003 * 109.46748 * 324.43127 * 7 6 5 9 9 C 1.52997 * 109.47067 * 84.43156 * 7 6 5 10 10 C 1.50695 * 109.47057 * 204.43679 * 7 6 5 11 11 O 1.21279 * 120.00409 * 359.97438 * 10 7 6 12 12 N 1.34775 * 119.99798 * 179.97438 * 10 7 6 13 13 C 1.39937 * 120.00000 * 184.70610 * 12 10 7 14 14 C 1.39289 * 119.94741 * 323.68286 * 13 12 10 15 15 C 1.38490 * 120.42362 * 179.76070 * 14 13 12 16 16 C 1.37679 * 120.32579 * 0.51331 * 15 14 13 17 17 C 1.40743 * 119.88403 * 359.74439 * 16 15 14 18 18 C 1.41406 * 120.20982 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00428 * 208.16060 * 18 17 16 20 20 C 1.39935 * 120.00072 * 28.16095 * 18 17 16 21 21 N 1.30832 * 119.99781 * 10.34842 * 20 18 17 22 22 Si 1.86800 * 120.00209 * 190.34265 * 20 18 17 23 23 H 1.48498 * 109.46815 * 0.02562 * 22 20 18 24 24 H 1.48491 * 109.46996 * 120.00179 * 22 20 18 25 25 H 1.48504 * 109.46945 * 240.00033 * 22 20 18 26 26 C 1.38250 * 119.94471 * 143.95364 * 13 12 10 27 27 C 1.38734 * 119.88851 * 359.97438 * 5 4 3 28 28 C 1.38142 * 119.94462 * 0.02562 * 27 5 4 29 29 H 1.09000 * 109.47613 * 89.99908 * 1 2 3 30 30 H 1.08998 * 109.47332 * 210.00292 * 1 2 3 31 31 H 1.09003 * 109.46958 * 329.99822 * 1 2 3 32 32 H 1.07999 * 119.97218 * 0.02562 * 3 2 1 33 33 H 1.08001 * 120.02360 * 180.29267 * 4 3 2 34 34 H 1.09008 * 109.46986 * 180.02562 * 9 7 6 35 35 H 1.09005 * 109.47427 * 300.00101 * 9 7 6 36 36 H 1.08992 * 109.47754 * 60.00577 * 9 7 6 37 37 H 0.97002 * 120.00422 * 4.70470 * 12 10 7 38 38 H 1.07996 * 119.78857 * 0.02562 * 14 13 12 39 39 H 1.08008 * 119.83355 * 180.25459 * 15 14 13 40 40 H 1.08003 * 120.05872 * 179.76209 * 16 15 14 41 41 H 0.97001 * 119.99647 * 180.02562 * 21 20 18 42 42 H 1.07999 * 120.16201 * 359.96356 * 26 13 12 43 43 H 1.08002 * 120.02933 * 179.97438 * 27 5 4 44 44 H 1.08008 * 119.97172 * 180.02562 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1981 0.0000 4 6 3.5786 1.2008 0.0057 5 6 4.2734 0.0001 0.0056 6 8 5.6324 0.0000 0.0107 7 6 6.2816 1.2681 -0.1010 8 1 5.7042 1.9149 -0.7616 9 6 6.3832 1.9127 1.2828 10 6 7.6643 1.0762 -0.6687 11 8 8.0555 -0.0368 -0.9494 12 7 8.4662 2.1416 -0.8643 13 6 9.7110 1.9764 -1.4820 14 6 10.4629 0.8301 -1.2353 15 6 11.6938 0.6542 -1.8451 16 6 12.1927 1.6161 -2.6944 17 6 11.4466 2.7820 -2.9490 18 6 11.9521 3.7742 -3.8205 19 1 11.6637 4.8066 -3.6887 20 6 12.8263 3.4185 -4.8537 21 7 13.0181 2.1571 -5.1429 22 14 13.7191 4.7446 -5.8200 23 1 13.3326 6.0808 -5.3001 24 1 15.1854 4.5619 -5.6728 25 1 13.3494 4.6452 -7.2548 26 6 10.1949 2.9537 -2.3317 27 6 3.5786 -1.2007 0.0003 28 6 2.1972 -1.1980 -0.0055 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6557 2.1326 0.0004 33 1 4.1172 2.1369 0.0105 34 1 6.8781 2.8803 1.1975 35 1 5.3831 2.0516 1.6934 36 1 6.9606 1.2661 1.9434 37 1 8.1806 3.0230 -0.5771 38 1 10.0817 0.0718 -0.5676 39 1 12.2671 -0.2402 -1.6502 40 1 13.1549 1.4762 -3.1647 41 1 13.6244 1.9105 -5.8589 42 1 9.6143 3.8445 -2.5206 43 1 4.1172 -2.1369 -0.0003 44 1 1.6558 -2.1326 -0.0092 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001533223487.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:05 Heat of formation + Delta-G solvation = -29.877839 kcal Electronic energy + Delta-G solvation = -25878.386736 eV Core-core repulsion = 22146.568232 eV Total energy + Delta-G solvation = -3731.818504 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.75679 -39.58334 -37.94739 -36.99706 -34.50371 -33.33099 -32.57000 -31.65819 -30.95138 -29.84364 -28.12755 -26.71778 -25.28370 -24.62209 -23.20358 -21.84360 -21.13555 -20.83113 -19.62753 -18.50977 -17.78114 -17.14046 -15.84031 -15.78834 -15.61516 -15.47693 -15.02591 -14.78995 -14.52462 -14.25690 -14.11095 -13.84561 -13.71448 -13.27639 -13.07838 -12.93508 -12.67459 -12.53457 -12.28575 -12.19123 -11.85312 -11.73807 -11.66894 -11.20830 -11.17686 -11.06312 -10.94872 -10.93156 -10.48106 -10.20384 -9.60820 -9.39471 -9.26983 -9.20688 -8.93750 -8.21546 -7.46653 -6.98639 -6.68222 -4.39518 1.12556 1.21271 2.46040 2.68293 2.79025 3.07661 3.12047 3.12931 3.27798 3.54108 3.71097 3.94399 4.46715 4.56973 4.64008 4.65424 4.68295 4.75332 4.84087 5.00917 5.11904 5.18640 5.33601 5.37245 5.42446 5.49780 5.64937 5.66174 5.81872 5.83443 6.08986 6.15726 6.26558 6.38749 6.50938 6.56626 6.68827 6.90363 6.96197 7.02944 7.24180 7.26012 7.55868 7.62184 7.95445 8.02074 8.10187 8.26746 8.51530 8.65282 8.88749 8.94497 10.24107 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.023910 B = 0.002177 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.769271 B =12857.908830 C =13236.138242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.131 4.131 3 C -0.080 4.080 4 C -0.209 4.209 5 C 0.130 3.870 6 O -0.283 6.283 7 C 0.068 3.932 8 H 0.099 0.901 9 C -0.177 4.177 10 C 0.510 3.490 11 O -0.498 6.498 12 N -0.661 5.661 13 C 0.145 3.855 14 C -0.220 4.220 15 C -0.100 4.100 16 C -0.159 4.159 17 C 0.119 3.881 18 C -0.464 4.464 19 H 0.077 0.923 20 C 0.072 3.928 21 N -0.802 5.802 22 Si 0.911 3.089 23 H -0.262 1.262 24 H -0.273 1.273 25 H -0.275 1.275 26 C -0.237 4.237 27 C -0.146 4.146 28 C -0.080 4.080 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.124 0.876 33 H 0.130 0.870 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.400 0.600 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.123 0.877 41 H 0.279 0.721 42 H 0.096 0.904 43 H 0.132 0.868 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.205 0.213 10.268 21.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.131 4.131 3 C -0.098 4.098 4 C -0.228 4.228 5 C 0.084 3.916 6 O -0.195 6.195 7 C 0.008 3.992 8 H 0.116 0.884 9 C -0.234 4.234 10 C 0.294 3.706 11 O -0.371 6.371 12 N -0.306 5.306 13 C 0.054 3.946 14 C -0.241 4.241 15 C -0.119 4.119 16 C -0.179 4.179 17 C 0.116 3.884 18 C -0.494 4.494 19 H 0.095 0.905 20 C -0.144 4.144 21 N -0.428 5.428 22 Si 0.736 3.264 23 H -0.185 1.185 24 H -0.198 1.198 25 H -0.200 1.200 26 C -0.259 4.259 27 C -0.165 4.165 28 C -0.098 4.098 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.141 0.859 33 H 0.148 0.852 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.234 0.766 38 H 0.123 0.877 39 H 0.111 0.889 40 H 0.141 0.859 41 H 0.090 0.910 42 H 0.114 0.886 43 H 0.150 0.850 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -18.698 -0.927 9.908 21.181 hybrid contribution 0.200 1.210 -0.501 1.325 sum -18.498 0.283 9.408 20.755 Atomic orbital electron populations 1.20706 0.91154 1.02511 1.02113 1.19827 0.96176 0.93098 1.04011 1.20810 0.93195 0.97678 0.98109 1.21314 0.95418 0.97190 1.08867 1.19100 0.82332 0.94314 0.95848 1.86225 1.15922 1.30028 1.87355 1.22226 0.92887 0.85358 0.98751 0.88381 1.22360 1.03996 1.01584 0.95497 1.19977 0.85690 0.85552 0.79394 1.90755 1.74164 1.23804 1.48367 1.43279 1.17537 1.09954 1.59855 1.17419 0.83449 0.97421 0.96269 1.20471 0.96657 0.99093 1.07866 1.20648 0.95276 0.98072 0.97875 1.21492 1.01020 0.95551 0.99791 1.17402 0.88988 0.92547 0.89504 1.19529 1.23763 0.95238 1.10892 0.90520 1.25889 0.95273 0.96095 0.97145 1.69808 1.29702 1.17327 1.25943 0.86214 0.79437 0.81498 0.79242 1.18544 1.19811 1.20047 1.20758 0.98712 1.00649 1.05791 1.20477 0.93727 0.96551 1.05698 1.20844 0.92888 0.97791 0.98315 0.91478 0.91742 0.91798 0.85852 0.85188 0.90136 0.90697 0.90483 0.76574 0.87657 0.88910 0.85889 0.91010 0.88600 0.84963 0.85423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.01 36.00 0.36 -0.32 16 2 C -0.13 -1.18 5.88 -104.60 -0.62 -1.79 16 3 C -0.08 -0.73 9.69 -39.60 -0.38 -1.12 16 4 C -0.21 -2.19 8.22 -39.43 -0.32 -2.51 16 5 C 0.13 1.65 6.59 -39.22 -0.26 1.39 16 6 O -0.28 -4.25 9.33 -39.32 -0.37 -4.62 16 7 C 0.07 0.88 2.66 -27.89 -0.07 0.81 16 8 H 0.10 1.06 6.34 -51.93 -0.33 0.73 16 9 C -0.18 -1.71 9.05 37.16 0.34 -1.38 16 10 C 0.51 9.04 7.07 -10.99 -0.08 8.96 16 11 O -0.50 -11.24 14.00 -14.35 -0.20 -11.44 16 12 N -0.66 -11.45 5.25 -9.91 -0.05 -11.51 16 13 C 0.15 3.26 6.27 -83.76 -0.52 2.74 16 14 C -0.22 -5.27 8.70 -39.10 -0.34 -5.61 16 15 C -0.10 -2.44 10.01 -39.69 -0.40 -2.84 16 16 C -0.16 -4.18 8.66 -38.84 -0.34 -4.51 16 17 C 0.12 3.14 5.56 -106.85 -0.59 2.54 16 18 C -0.46 -12.15 9.07 -37.74 -0.34 -12.49 16 19 H 0.08 1.91 7.87 -52.49 -0.41 1.50 16 20 C 0.07 1.82 5.26 -17.34 -0.09 1.72 16 21 N -0.80 -20.93 10.78 55.55 0.60 -20.33 16 22 Si 0.91 18.64 29.57 -169.99 -5.03 13.62 16 23 H -0.26 -5.26 7.11 56.52 0.40 -4.85 16 24 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 25 H -0.28 -5.58 7.11 56.52 0.40 -5.17 16 26 C -0.24 -5.66 9.71 -38.68 -0.38 -6.03 16 27 C -0.15 -1.70 9.99 -39.43 -0.39 -2.09 16 28 C -0.08 -0.77 9.69 -39.61 -0.38 -1.15 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.35 8.09 -51.93 -0.42 -0.07 16 31 H 0.06 0.34 8.08 -51.93 -0.42 -0.08 16 32 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.13 1.12 5.41 -52.49 -0.28 0.84 16 34 H 0.08 0.61 7.47 -51.92 -0.39 0.23 16 35 H 0.07 0.61 6.86 -51.93 -0.36 0.25 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.40 5.23 8.11 -40.82 -0.33 4.90 16 38 H 0.11 2.52 6.30 -52.49 -0.33 2.19 16 39 H 0.09 2.06 8.06 -52.48 -0.42 1.63 16 40 H 0.12 3.32 6.15 -52.48 -0.32 3.00 16 41 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 42 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 43 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 44 H 0.13 0.92 8.06 -52.48 -0.42 0.49 16 LS Contribution 367.90 15.07 5.54 5.54 Total: -1.00 -32.10 367.90 -10.01 -42.11 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -5.69 Total: 10.30 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: -4.82 Total: -23.68 kcal Atomic # 7 Polarization: -32.38 SS G_CDS: 0.55 Total: -31.84 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.57 Total: -16.06 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.10 -10.01 -42.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001533223487.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.236 kcal (2) G-P(sol) polarization free energy of solvation -32.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds