Wall clock time and date at job start Tue Mar 31 2020 13:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38270 * 119.94205 * 2 1 4 4 C 1.38149 * 120.05231 * 179.72462 * 3 2 1 5 5 C 1.38729 * 119.94471 * 0.28111 * 4 3 2 6 6 O 1.35896 * 120.05642 * 179.97438 * 5 4 3 7 7 C 1.42903 * 117.00170 * 354.72360 * 6 5 4 8 8 H 1.09003 * 109.46748 * 324.43127 * 7 6 5 9 9 C 1.52997 * 109.47067 * 84.43156 * 7 6 5 10 10 C 1.50695 * 109.47057 * 204.43679 * 7 6 5 11 11 O 1.21279 * 120.00409 * 359.97438 * 10 7 6 12 12 N 1.34775 * 119.99798 * 179.97438 * 10 7 6 13 13 C 1.39937 * 120.00000 * 184.70610 * 12 10 7 14 14 C 1.39289 * 119.94741 * 323.68286 * 13 12 10 15 15 C 1.38490 * 120.42362 * 179.76070 * 14 13 12 16 16 C 1.37679 * 120.32579 * 0.51331 * 15 14 13 17 17 C 1.40743 * 119.88403 * 359.74439 * 16 15 14 18 18 C 1.41406 * 120.20982 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00428 * 208.16060 * 18 17 16 20 20 C 1.39935 * 120.00072 * 28.16095 * 18 17 16 21 21 N 1.30832 * 119.99781 * 10.34842 * 20 18 17 22 22 Si 1.86800 * 120.00209 * 190.34265 * 20 18 17 23 23 H 1.48498 * 109.46815 * 0.02562 * 22 20 18 24 24 H 1.48491 * 109.46996 * 120.00179 * 22 20 18 25 25 H 1.48504 * 109.46945 * 240.00033 * 22 20 18 26 26 C 1.38250 * 119.94471 * 143.95364 * 13 12 10 27 27 C 1.38734 * 119.88851 * 359.97438 * 5 4 3 28 28 C 1.38142 * 119.94462 * 0.02562 * 27 5 4 29 29 H 1.09000 * 109.47613 * 89.99908 * 1 2 3 30 30 H 1.08998 * 109.47332 * 210.00292 * 1 2 3 31 31 H 1.09003 * 109.46958 * 329.99822 * 1 2 3 32 32 H 1.07999 * 119.97218 * 0.02562 * 3 2 1 33 33 H 1.08001 * 120.02360 * 180.29267 * 4 3 2 34 34 H 1.09008 * 109.46986 * 180.02562 * 9 7 6 35 35 H 1.09005 * 109.47427 * 300.00101 * 9 7 6 36 36 H 1.08992 * 109.47754 * 60.00577 * 9 7 6 37 37 H 0.97002 * 120.00422 * 4.70470 * 12 10 7 38 38 H 1.07996 * 119.78857 * 0.02562 * 14 13 12 39 39 H 1.08008 * 119.83355 * 180.25459 * 15 14 13 40 40 H 1.08003 * 120.05872 * 179.76209 * 16 15 14 41 41 H 0.97001 * 119.99647 * 180.02562 * 21 20 18 42 42 H 1.07999 * 120.16201 * 359.96356 * 26 13 12 43 43 H 1.08002 * 120.02933 * 179.97438 * 27 5 4 44 44 H 1.08008 * 119.97172 * 180.02562 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1981 0.0000 4 6 3.5786 1.2008 0.0057 5 6 4.2734 0.0001 0.0056 6 8 5.6324 0.0000 0.0107 7 6 6.2816 1.2681 -0.1010 8 1 5.7042 1.9149 -0.7616 9 6 6.3832 1.9127 1.2828 10 6 7.6643 1.0762 -0.6687 11 8 8.0555 -0.0368 -0.9494 12 7 8.4662 2.1416 -0.8643 13 6 9.7110 1.9764 -1.4820 14 6 10.4629 0.8301 -1.2353 15 6 11.6938 0.6542 -1.8451 16 6 12.1927 1.6161 -2.6944 17 6 11.4466 2.7820 -2.9490 18 6 11.9521 3.7742 -3.8205 19 1 11.6637 4.8066 -3.6887 20 6 12.8263 3.4185 -4.8537 21 7 13.0181 2.1571 -5.1429 22 14 13.7191 4.7446 -5.8200 23 1 13.3326 6.0808 -5.3001 24 1 15.1854 4.5619 -5.6728 25 1 13.3494 4.6452 -7.2548 26 6 10.1949 2.9537 -2.3317 27 6 3.5786 -1.2007 0.0003 28 6 2.1972 -1.1980 -0.0055 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6557 2.1326 0.0004 33 1 4.1172 2.1369 0.0105 34 1 6.8781 2.8803 1.1975 35 1 5.3831 2.0516 1.6934 36 1 6.9606 1.2661 1.9434 37 1 8.1806 3.0230 -0.5771 38 1 10.0817 0.0718 -0.5676 39 1 12.2671 -0.2402 -1.6502 40 1 13.1549 1.4762 -3.1647 41 1 13.6244 1.9105 -5.8589 42 1 9.6143 3.8445 -2.5206 43 1 4.1172 -2.1369 -0.0003 44 1 1.6558 -2.1326 -0.0092 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001533223487.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:04 Heat of formation + Delta-G solvation = -46.787637 kcal Electronic energy + Delta-G solvation = -25879.120000 eV Core-core repulsion = 22146.568232 eV Total energy + Delta-G solvation = -3732.551768 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.87669 -40.83532 -39.21935 -38.43795 -36.21165 -35.03126 -33.54909 -32.46466 -31.79312 -31.76956 -29.82607 -27.40345 -27.19992 -25.68199 -24.10026 -23.14770 -22.81377 -22.09269 -21.10744 -19.61053 -19.29689 -18.54123 -17.39979 -17.04790 -16.85737 -16.60717 -16.38602 -16.27357 -15.74653 -15.38505 -15.29082 -14.92203 -14.65168 -14.49915 -14.38076 -14.11419 -14.08839 -13.58812 -13.44183 -13.27245 -13.00351 -12.89945 -12.86172 -12.79016 -12.66307 -12.39930 -12.26491 -11.93668 -11.87632 -11.69602 -11.45966 -11.17706 -10.98159 -10.63844 -9.96167 -9.41563 -9.02492 -8.83145 -8.56122 -6.38476 0.37799 0.43060 0.78846 0.94349 1.40605 1.46285 1.52068 1.56378 1.66279 2.22591 2.54949 2.76656 2.78292 3.42158 3.64648 3.68806 3.82842 3.89211 3.96451 4.10034 4.33129 4.39724 4.46049 4.51294 4.61849 4.64975 4.71086 4.83632 4.91214 4.97327 5.00506 5.07135 5.09853 5.11136 5.16725 5.20186 5.33599 5.37500 5.39135 5.69105 5.70160 5.79026 5.86182 6.07718 6.09708 6.24483 6.38346 6.55230 6.67452 6.92667 6.96132 7.16791 8.38174 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.023910 B = 0.002177 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.769271 B =12857.908830 C =13236.138242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.131 4.131 3 C -0.083 4.083 4 C -0.210 4.210 5 C 0.100 3.900 6 O -0.317 6.317 7 C 0.077 3.923 8 H 0.126 0.874 9 C -0.170 4.170 10 C 0.506 3.494 11 O -0.553 6.553 12 N -0.647 5.647 13 C 0.156 3.844 14 C -0.234 4.234 15 C -0.104 4.104 16 C -0.186 4.186 17 C 0.090 3.910 18 C -0.492 4.492 19 H 0.083 0.917 20 C 0.028 3.972 21 N -0.836 5.836 22 Si 0.989 3.011 23 H -0.253 1.253 24 H -0.267 1.267 25 H -0.269 1.269 26 C -0.243 4.243 27 C -0.168 4.168 28 C -0.085 4.085 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.151 0.849 33 H 0.149 0.851 34 H 0.106 0.894 35 H 0.096 0.904 36 H 0.061 0.939 37 H 0.423 0.577 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.286 0.714 42 H 0.117 0.883 43 H 0.123 0.877 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.750 2.590 10.637 24.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.132 4.132 3 C -0.101 4.101 4 C -0.228 4.228 5 C 0.055 3.945 6 O -0.230 6.230 7 C 0.018 3.982 8 H 0.143 0.857 9 C -0.228 4.228 10 C 0.294 3.706 11 O -0.430 6.430 12 N -0.295 5.295 13 C 0.063 3.937 14 C -0.256 4.256 15 C -0.123 4.123 16 C -0.206 4.206 17 C 0.087 3.913 18 C -0.522 4.522 19 H 0.102 0.898 20 C -0.186 4.186 21 N -0.463 5.463 22 Si 0.809 3.191 23 H -0.176 1.176 24 H -0.192 1.192 25 H -0.194 1.194 26 C -0.264 4.264 27 C -0.187 4.187 28 C -0.102 4.102 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.169 0.831 33 H 0.167 0.833 34 H 0.124 0.876 35 H 0.115 0.885 36 H 0.080 0.920 37 H 0.262 0.738 38 H 0.121 0.879 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.096 0.904 42 H 0.135 0.865 43 H 0.141 0.859 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -21.288 1.479 10.314 23.701 hybrid contribution 0.843 0.375 -0.569 1.083 sum -20.445 1.854 9.745 22.725 Atomic orbital electron populations 1.20766 0.89009 1.03708 1.02894 1.20248 0.97804 0.92778 1.02336 1.21201 0.92863 0.98960 0.97073 1.21542 0.96131 0.96939 1.08221 1.19353 0.81470 0.95624 0.98043 1.86167 1.17499 1.31213 1.88150 1.22247 0.89634 0.85496 1.00848 0.85660 1.22383 1.05439 1.01978 0.92952 1.20941 0.87304 0.84457 0.77943 1.90730 1.75650 1.25977 1.50602 1.43137 1.15811 1.11454 1.59050 1.17424 0.84859 0.96130 0.95244 1.20591 0.96811 0.99881 1.08269 1.20847 0.95762 0.98267 0.97394 1.21418 1.01025 0.96784 1.01366 1.17804 0.90200 0.92936 0.90315 1.19839 1.25152 0.95523 1.11672 0.89842 1.26840 0.95468 0.98397 0.97869 1.69892 1.30269 1.19427 1.26675 0.85057 0.78007 0.78473 0.77530 1.17639 1.19176 1.19446 1.20943 0.98211 1.01680 1.05590 1.20655 0.94865 0.96288 1.06893 1.21120 0.92078 0.99274 0.97773 0.90769 0.90812 0.90451 0.83104 0.83307 0.87563 0.88524 0.91983 0.73776 0.87949 0.87498 0.87480 0.90350 0.86468 0.85938 0.83459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 10.01 71.24 0.71 -0.28 16 2 C -0.13 -2.03 5.88 -19.85 -0.12 -2.14 16 3 C -0.08 -1.27 9.69 22.26 0.22 -1.05 16 4 C -0.21 -3.89 8.22 22.37 0.18 -3.70 16 5 C 0.10 2.48 6.59 22.51 0.15 2.63 16 6 O -0.32 -9.55 9.33 -73.34 -0.68 -10.23 16 7 C 0.08 1.89 2.66 29.85 0.08 1.97 16 8 H 0.13 2.36 6.34 -2.39 -0.02 2.34 16 9 C -0.17 -2.88 9.05 71.98 0.65 -2.23 16 10 C 0.51 17.78 7.07 87.66 0.62 18.40 16 11 O -0.55 -25.67 14.00 16.01 0.22 -25.45 16 12 N -0.65 -21.67 5.25 -303.66 -1.59 -23.26 16 13 C 0.16 7.00 6.27 38.10 0.24 7.24 16 14 C -0.23 -11.52 8.70 22.58 0.20 -11.32 16 15 C -0.10 -5.27 10.01 22.20 0.22 -5.05 16 16 C -0.19 -10.17 8.66 22.75 0.20 -9.98 16 17 C 0.09 4.88 5.56 -21.31 -0.12 4.77 16 18 C -0.49 -26.05 9.07 23.46 0.21 -25.84 16 19 H 0.08 4.15 7.87 -2.91 -0.02 4.13 16 20 C 0.03 1.39 5.26 85.25 0.45 1.84 16 21 N -0.84 -44.66 10.78 21.82 0.24 -44.42 16 22 Si 0.99 38.02 29.57 68.60 2.03 40.05 16 23 H -0.25 -9.29 7.11 99.48 0.71 -8.58 16 24 H -0.27 -9.93 7.11 99.48 0.71 -9.22 16 25 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 26 C -0.24 -11.55 9.71 22.85 0.22 -11.33 16 27 C -0.17 -3.95 9.99 22.37 0.22 -3.73 16 28 C -0.08 -1.51 9.69 22.25 0.22 -1.29 16 29 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.56 8.09 -2.39 -0.02 0.54 16 31 H 0.08 0.53 8.08 -2.39 -0.02 0.51 16 32 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 33 H 0.15 2.04 5.41 -2.91 -0.02 2.02 16 34 H 0.11 1.23 7.47 -2.38 -0.02 1.21 16 35 H 0.10 1.26 6.86 -2.38 -0.02 1.24 16 36 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.42 9.98 8.11 -92.71 -0.75 9.23 16 38 H 0.10 5.07 6.30 -2.91 -0.02 5.05 16 39 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 40 H 0.11 6.09 6.15 -2.91 -0.02 6.08 16 41 H 0.29 13.84 8.30 -92.71 -0.77 13.07 16 42 H 0.12 4.94 8.06 -2.91 -0.02 4.92 16 43 H 0.12 2.94 8.06 -2.91 -0.02 2.92 16 44 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -73.32 367.90 5.04 -68.27 By element: Atomic # 1 Polarization: 35.86 SS G_CDS: 0.28 Total: 36.15 kcal Atomic # 6 Polarization: -45.65 SS G_CDS: 4.55 Total: -41.10 kcal Atomic # 7 Polarization: -66.33 SS G_CDS: -1.36 Total: -67.69 kcal Atomic # 8 Polarization: -35.22 SS G_CDS: -0.46 Total: -35.68 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 2.03 Total: 40.05 kcal Total: -73.32 5.04 -68.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001533223487.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.487 kcal (2) G-P(sol) polarization free energy of solvation -73.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds