Wall clock time and date at job start Tue Mar 31 2020 13:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38267 * 119.94608 * 2 1 4 4 C 1.38143 * 120.06015 * 180.02562 * 3 2 1 5 5 C 1.38731 * 119.94457 * 0.02562 * 4 3 2 6 6 O 1.35897 * 120.05563 * 180.02562 * 5 4 3 7 7 C 1.42906 * 116.99715 * 185.31490 * 6 5 4 8 8 H 1.09005 * 109.47174 * 35.05162 * 7 6 5 9 9 C 1.52996 * 109.46950 * 275.05103 * 7 6 5 10 10 C 1.50700 * 109.46998 * 155.05157 * 7 6 5 11 11 O 1.21287 * 119.99860 * 4.99936 * 10 7 6 12 12 N 1.34779 * 119.99912 * 185.27461 * 10 7 6 13 13 C 1.39933 * 119.99965 * 174.10465 * 12 10 7 14 14 C 1.39291 * 119.94823 * 325.13796 * 13 12 10 15 15 C 1.38488 * 120.42666 * 179.76011 * 14 13 12 16 16 C 1.37682 * 120.32338 * 0.51441 * 15 14 13 17 17 C 1.40739 * 119.88323 * 359.74370 * 16 15 14 18 18 C 1.41411 * 120.20804 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00492 * 34.27102 * 18 17 16 20 20 C 1.39933 * 119.99814 * 214.26891 * 18 17 16 21 21 N 1.30829 * 120.00178 * 5.49694 * 20 18 17 22 22 Si 1.86800 * 120.00176 * 185.49894 * 20 18 17 23 23 H 1.48504 * 109.47373 * 89.99745 * 22 20 18 24 24 H 1.48497 * 109.47256 * 210.00062 * 22 20 18 25 25 H 1.48506 * 109.46892 * 329.99931 * 22 20 18 26 26 C 1.38246 * 119.94875 * 145.40921 * 13 12 10 27 27 C 1.38741 * 119.88664 * 0.27704 * 5 4 3 28 28 C 1.38147 * 119.93965 * 359.42328 * 27 5 4 29 29 H 1.08998 * 109.47151 * 89.99582 * 1 2 3 30 30 H 1.09002 * 109.47004 * 209.99699 * 1 2 3 31 31 H 1.09002 * 109.46671 * 329.99468 * 1 2 3 32 32 H 1.08005 * 119.96831 * 359.97438 * 3 2 1 33 33 H 1.08006 * 120.03028 * 179.97438 * 4 3 2 34 34 H 1.09003 * 109.46915 * 179.97438 * 9 7 6 35 35 H 1.08999 * 109.47639 * 300.00017 * 9 7 6 36 36 H 1.08998 * 109.47412 * 60.00056 * 9 7 6 37 37 H 0.96995 * 119.99988 * 354.11306 * 12 10 7 38 38 H 1.07997 * 119.78721 * 0.02562 * 14 13 12 39 39 H 1.07998 * 119.84018 * 180.23867 * 15 14 13 40 40 H 1.08004 * 120.05755 * 179.76574 * 16 15 14 41 41 H 0.96997 * 120.00458 * 180.02562 * 21 20 18 42 42 H 1.08004 * 120.15633 * 359.96085 * 26 13 12 43 43 H 1.07997 * 120.02828 * 179.72607 * 27 5 4 44 44 H 1.08001 * 119.96712 * 180.27883 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5786 1.2008 -0.0005 5 6 4.2735 0.0001 -0.0016 6 8 5.6325 0.0002 -0.0016 7 6 6.2813 -1.2675 -0.1207 8 1 5.6966 -1.9150 -0.7743 9 6 6.3996 -1.9117 1.2620 10 6 7.6571 -1.0748 -0.7045 11 8 8.0791 0.0443 -0.9060 12 7 8.4166 -2.1461 -1.0079 13 6 9.6411 -1.9729 -1.6627 14 6 9.7871 -0.9602 -2.6078 15 6 10.9959 -0.7767 -3.2582 16 6 12.0644 -1.6009 -2.9849 17 6 11.9301 -2.6318 -2.0362 18 6 13.0232 -3.4820 -1.7498 19 1 14.0304 -3.0928 -1.7720 20 6 12.7998 -4.8276 -1.4374 21 7 11.5925 -5.3255 -1.5149 22 14 14.2255 -5.9130 -0.9096 23 1 14.3739 -5.8523 0.5668 24 1 13.9604 -7.3144 -1.3232 25 1 15.4759 -5.4353 -1.5527 26 6 10.7024 -2.8107 -1.3746 27 6 3.5787 -1.2008 -0.0080 28 6 2.1972 -1.1980 -0.0011 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6558 2.1326 -0.0004 33 1 4.1173 2.1370 -0.0010 34 1 6.8941 -2.8789 1.1711 35 1 6.9843 -1.2644 1.9157 36 1 5.4045 -2.0511 1.6843 37 1 8.1143 -3.0372 -0.7725 38 1 8.9534 -0.3112 -2.8319 39 1 11.0997 0.0139 -3.9865 40 1 13.0041 -1.4564 -3.4973 41 1 11.4376 -6.2581 -1.2981 42 1 10.5890 -3.5986 -0.6446 43 1 4.1173 -2.1368 -0.0133 44 1 1.6559 -2.1326 -0.0015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001533223489.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:09 Heat of formation + Delta-G solvation = -31.702478 kcal Electronic energy + Delta-G solvation = -26054.146862 eV Core-core repulsion = 22322.249236 eV Total energy + Delta-G solvation = -3731.897626 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.72604 -39.55150 -37.93952 -37.00383 -34.34916 -33.39478 -32.63296 -31.65623 -30.95316 -29.56081 -28.33613 -26.69717 -25.27025 -24.61369 -23.18699 -21.79509 -21.26227 -20.77846 -19.58575 -18.47235 -17.52962 -17.27032 -15.88298 -15.76135 -15.58637 -15.52651 -14.87435 -14.73100 -14.52811 -14.38209 -14.08583 -13.82824 -13.69788 -13.24593 -13.07602 -12.87617 -12.63049 -12.44257 -12.37877 -12.23100 -11.81296 -11.71677 -11.69311 -11.24929 -11.17794 -11.05812 -10.91348 -10.76136 -10.63280 -10.03710 -9.77252 -9.50505 -9.21920 -9.19547 -9.02100 -8.19849 -7.33803 -7.05951 -6.65929 -4.42314 1.13809 1.22552 2.43704 2.69976 2.83267 3.07295 3.10471 3.12619 3.26412 3.55321 3.76330 3.95228 4.50308 4.58891 4.64415 4.66135 4.76977 4.79241 4.85544 5.02479 5.13518 5.23659 5.34404 5.43283 5.46593 5.51398 5.59021 5.67322 5.84332 5.90058 6.10414 6.17413 6.21987 6.39874 6.54686 6.57812 6.61542 6.81490 6.97367 7.03127 7.22770 7.27007 7.54249 7.63331 7.85342 7.98909 8.08729 8.26134 8.48978 8.67087 8.87154 8.91723 10.26373 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.023680 B = 0.002353 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.154720 B =11896.586608 C =12673.194256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.131 4.131 3 C -0.081 4.081 4 C -0.146 4.146 5 C 0.130 3.870 6 O -0.283 6.283 7 C 0.068 3.932 8 H 0.098 0.902 9 C -0.177 4.177 10 C 0.510 3.490 11 O -0.502 6.502 12 N -0.659 5.659 13 C 0.140 3.860 14 C -0.217 4.217 15 C -0.091 4.091 16 C -0.216 4.216 17 C 0.119 3.881 18 C -0.468 4.468 19 H 0.077 0.923 20 C 0.073 3.927 21 N -0.815 5.815 22 Si 0.912 3.088 23 H -0.270 1.270 24 H -0.279 1.279 25 H -0.263 1.263 26 C -0.164 4.164 27 C -0.209 4.209 28 C -0.080 4.080 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.128 0.872 33 H 0.132 0.868 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.403 0.597 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.277 0.723 42 H 0.123 0.877 43 H 0.131 0.869 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.093 3.121 5.028 19.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.132 4.132 3 C -0.099 4.099 4 C -0.165 4.165 5 C 0.084 3.916 6 O -0.195 6.195 7 C 0.008 3.992 8 H 0.115 0.885 9 C -0.234 4.234 10 C 0.295 3.705 11 O -0.375 6.375 12 N -0.304 5.304 13 C 0.049 3.951 14 C -0.238 4.238 15 C -0.110 4.110 16 C -0.236 4.236 17 C 0.117 3.883 18 C -0.499 4.499 19 H 0.095 0.905 20 C -0.141 4.141 21 N -0.443 5.443 22 Si 0.737 3.263 23 H -0.195 1.195 24 H -0.204 1.204 25 H -0.187 1.187 26 C -0.186 4.186 27 C -0.228 4.228 28 C -0.098 4.098 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.146 0.854 33 H 0.150 0.850 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.238 0.762 38 H 0.119 0.881 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.088 0.912 42 H 0.140 0.860 43 H 0.149 0.851 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -18.811 3.887 4.929 19.831 hybrid contribution 0.404 -1.360 0.293 1.449 sum -18.407 2.526 5.222 19.300 Atomic orbital electron populations 1.20705 0.91165 1.02513 1.02086 1.19824 0.96164 0.93098 1.04064 1.20839 0.92888 0.97770 0.98362 1.20471 0.93716 0.96529 1.05794 1.19111 0.82378 0.94297 0.95804 1.86229 1.15869 1.30145 1.87296 1.22234 0.92864 0.85269 0.98852 0.88457 1.22345 1.03938 1.01752 0.95380 1.19979 0.85887 0.85552 0.79130 1.90749 1.72144 1.23614 1.50985 1.43323 1.20025 1.08821 1.58264 1.17595 0.84143 0.98952 0.94446 1.20344 0.98444 1.02649 1.02332 1.20450 0.93354 0.98268 0.98911 1.21177 0.98105 1.01686 1.02644 1.17392 0.92331 0.90283 0.88324 1.19487 0.94249 0.93604 1.42534 0.90464 1.25818 0.96700 0.98797 0.92820 1.69753 1.21639 1.15117 1.37770 0.86253 0.81736 0.78758 0.79555 1.19521 1.20404 1.18749 1.21111 0.92398 1.01775 1.03298 1.21325 0.95423 0.97242 1.08796 1.20812 0.93197 0.97680 0.98074 0.91496 0.91794 0.91757 0.85449 0.84986 0.89975 0.90465 0.90749 0.76230 0.88110 0.88815 0.88614 0.91230 0.85953 0.85150 0.85852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.69 10.01 36.01 0.36 -0.33 16 2 C -0.13 -1.19 5.88 -104.60 -0.62 -1.81 16 3 C -0.08 -0.77 9.69 -39.61 -0.38 -1.16 16 4 C -0.15 -1.71 9.99 -39.43 -0.39 -2.11 16 5 C 0.13 1.67 6.60 -39.21 -0.26 1.41 16 6 O -0.28 -4.32 9.34 -39.28 -0.37 -4.69 16 7 C 0.07 0.92 2.64 -27.88 -0.07 0.85 16 8 H 0.10 1.09 6.29 -51.93 -0.33 0.76 16 9 C -0.18 -1.91 9.12 37.16 0.34 -1.57 16 10 C 0.51 9.28 6.89 -10.98 -0.08 9.20 16 11 O -0.50 -11.34 14.30 -14.31 -0.20 -11.54 16 12 N -0.66 -12.13 5.30 -9.91 -0.05 -12.18 16 13 C 0.14 3.23 6.24 -83.76 -0.52 2.71 16 14 C -0.22 -5.15 8.66 -39.10 -0.34 -5.49 16 15 C -0.09 -2.12 10.02 -39.69 -0.40 -2.52 16 16 C -0.22 -5.33 9.79 -38.84 -0.38 -5.71 16 17 C 0.12 3.15 5.50 -106.85 -0.59 2.56 16 18 C -0.47 -12.24 9.04 -37.74 -0.34 -12.58 16 19 H 0.08 1.96 7.85 -52.49 -0.41 1.54 16 20 C 0.07 1.81 5.31 -17.34 -0.09 1.72 16 21 N -0.82 -20.38 10.96 55.55 0.61 -19.77 16 22 Si 0.91 18.56 29.56 -169.99 -5.03 13.53 16 23 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 24 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 25 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 26 C -0.16 -4.11 8.53 -38.69 -0.33 -4.44 16 27 C -0.21 -2.24 8.25 -39.43 -0.33 -2.57 16 28 C -0.08 -0.75 9.69 -39.60 -0.38 -1.13 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.35 8.08 -51.93 -0.42 -0.07 16 31 H 0.06 0.35 8.08 -51.93 -0.42 -0.07 16 32 H 0.13 0.92 8.06 -52.48 -0.42 0.49 16 33 H 0.13 1.47 8.06 -52.48 -0.42 1.05 16 34 H 0.08 0.76 7.77 -51.93 -0.40 0.35 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.67 6.94 -51.93 -0.36 0.31 16 37 H 0.40 6.05 8.43 -40.82 -0.34 5.71 16 38 H 0.10 2.38 6.52 -52.49 -0.34 2.04 16 39 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 40 H 0.10 2.20 8.06 -52.48 -0.42 1.78 16 41 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 42 H 0.12 3.09 6.47 -52.48 -0.34 2.75 16 43 H 0.13 1.18 5.44 -52.49 -0.29 0.90 16 44 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 369.39 15.07 5.57 5.57 Total: -1.00 -31.17 369.39 -10.02 -41.20 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -5.75 Total: 10.84 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: -4.80 Total: -22.96 kcal Atomic # 7 Polarization: -32.51 SS G_CDS: 0.56 Total: -31.95 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.57 Total: -16.23 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.17 -10.02 -41.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001533223489.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.493 kcal (2) G-P(sol) polarization free energy of solvation -31.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds