Wall clock time and date at job start Tue Mar 31 2020 13:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38267 * 119.94608 * 2 1 4 4 C 1.38143 * 120.06015 * 180.02562 * 3 2 1 5 5 C 1.38731 * 119.94457 * 0.02562 * 4 3 2 6 6 O 1.35897 * 120.05563 * 180.02562 * 5 4 3 7 7 C 1.42906 * 116.99715 * 185.31490 * 6 5 4 8 8 H 1.09005 * 109.47174 * 35.05162 * 7 6 5 9 9 C 1.52996 * 109.46950 * 275.05103 * 7 6 5 10 10 C 1.50700 * 109.46998 * 155.05157 * 7 6 5 11 11 O 1.21287 * 119.99860 * 4.99936 * 10 7 6 12 12 N 1.34779 * 119.99912 * 185.27461 * 10 7 6 13 13 C 1.39933 * 119.99965 * 174.10465 * 12 10 7 14 14 C 1.39291 * 119.94823 * 325.13796 * 13 12 10 15 15 C 1.38488 * 120.42666 * 179.76011 * 14 13 12 16 16 C 1.37682 * 120.32338 * 0.51441 * 15 14 13 17 17 C 1.40739 * 119.88323 * 359.74370 * 16 15 14 18 18 C 1.41411 * 120.20804 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00492 * 34.27102 * 18 17 16 20 20 C 1.39933 * 119.99814 * 214.26891 * 18 17 16 21 21 N 1.30829 * 120.00178 * 5.49694 * 20 18 17 22 22 Si 1.86800 * 120.00176 * 185.49894 * 20 18 17 23 23 H 1.48504 * 109.47373 * 89.99745 * 22 20 18 24 24 H 1.48497 * 109.47256 * 210.00062 * 22 20 18 25 25 H 1.48506 * 109.46892 * 329.99931 * 22 20 18 26 26 C 1.38246 * 119.94875 * 145.40921 * 13 12 10 27 27 C 1.38741 * 119.88664 * 0.27704 * 5 4 3 28 28 C 1.38147 * 119.93965 * 359.42328 * 27 5 4 29 29 H 1.08998 * 109.47151 * 89.99582 * 1 2 3 30 30 H 1.09002 * 109.47004 * 209.99699 * 1 2 3 31 31 H 1.09002 * 109.46671 * 329.99468 * 1 2 3 32 32 H 1.08005 * 119.96831 * 359.97438 * 3 2 1 33 33 H 1.08006 * 120.03028 * 179.97438 * 4 3 2 34 34 H 1.09003 * 109.46915 * 179.97438 * 9 7 6 35 35 H 1.08999 * 109.47639 * 300.00017 * 9 7 6 36 36 H 1.08998 * 109.47412 * 60.00056 * 9 7 6 37 37 H 0.96995 * 119.99988 * 354.11306 * 12 10 7 38 38 H 1.07997 * 119.78721 * 0.02562 * 14 13 12 39 39 H 1.07998 * 119.84018 * 180.23867 * 15 14 13 40 40 H 1.08004 * 120.05755 * 179.76574 * 16 15 14 41 41 H 0.96997 * 120.00458 * 180.02562 * 21 20 18 42 42 H 1.08004 * 120.15633 * 359.96085 * 26 13 12 43 43 H 1.07997 * 120.02828 * 179.72607 * 27 5 4 44 44 H 1.08001 * 119.96712 * 180.27883 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5786 1.2008 -0.0005 5 6 4.2735 0.0001 -0.0016 6 8 5.6325 0.0002 -0.0016 7 6 6.2813 -1.2675 -0.1207 8 1 5.6966 -1.9150 -0.7743 9 6 6.3996 -1.9117 1.2620 10 6 7.6571 -1.0748 -0.7045 11 8 8.0791 0.0443 -0.9060 12 7 8.4166 -2.1461 -1.0079 13 6 9.6411 -1.9729 -1.6627 14 6 9.7871 -0.9602 -2.6078 15 6 10.9959 -0.7767 -3.2582 16 6 12.0644 -1.6009 -2.9849 17 6 11.9301 -2.6318 -2.0362 18 6 13.0232 -3.4820 -1.7498 19 1 14.0304 -3.0928 -1.7720 20 6 12.7998 -4.8276 -1.4374 21 7 11.5925 -5.3255 -1.5149 22 14 14.2255 -5.9130 -0.9096 23 1 14.3739 -5.8523 0.5668 24 1 13.9604 -7.3144 -1.3232 25 1 15.4759 -5.4353 -1.5527 26 6 10.7024 -2.8107 -1.3746 27 6 3.5787 -1.2008 -0.0080 28 6 2.1972 -1.1980 -0.0011 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6558 2.1326 -0.0004 33 1 4.1173 2.1370 -0.0010 34 1 6.8941 -2.8789 1.1711 35 1 6.9843 -1.2644 1.9157 36 1 5.4045 -2.0511 1.6843 37 1 8.1143 -3.0372 -0.7725 38 1 8.9534 -0.3112 -2.8319 39 1 11.0997 0.0139 -3.9865 40 1 13.0041 -1.4564 -3.4973 41 1 11.4376 -6.2581 -1.2981 42 1 10.5890 -3.5986 -0.6446 43 1 4.1173 -2.1368 -0.0133 44 1 1.6559 -2.1326 -0.0015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001533223489.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:08 Heat of formation + Delta-G solvation = -47.454502 kcal Electronic energy + Delta-G solvation = -26054.829921 eV Core-core repulsion = 22322.249236 eV Total energy + Delta-G solvation = -3732.580685 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.87515 -40.83372 -39.22849 -38.43539 -36.05753 -35.16436 -33.61046 -32.48436 -31.80934 -31.45349 -30.03125 -27.39879 -27.18068 -25.71500 -24.08797 -23.17671 -22.87690 -21.98701 -21.13503 -19.52541 -19.13670 -18.74174 -17.46331 -17.01178 -16.78991 -16.51870 -16.46601 -16.25659 -15.74894 -15.45942 -15.29258 -14.88383 -14.59582 -14.49663 -14.38884 -14.19628 -14.10608 -13.60676 -13.46513 -13.29423 -13.06516 -12.88578 -12.82321 -12.67636 -12.64375 -12.40405 -12.32657 -11.89510 -11.84884 -11.70372 -11.59997 -11.19738 -10.99872 -10.69003 -9.96500 -9.27252 -9.02549 -8.89159 -8.50678 -6.39000 0.37485 0.42641 0.72230 1.01353 1.41929 1.46148 1.52070 1.54031 1.64194 2.25033 2.54814 2.77753 2.79018 3.41242 3.62932 3.65858 3.80042 3.88630 3.96018 4.09771 4.32274 4.41425 4.45750 4.50123 4.59491 4.64167 4.69795 4.80209 4.83530 4.91244 5.03557 5.07162 5.10810 5.12250 5.14943 5.18702 5.35361 5.37368 5.39068 5.68872 5.73138 5.78612 5.86076 5.96989 6.07727 6.27727 6.37849 6.52742 6.66857 6.93760 6.95950 7.13495 8.42609 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.023680 B = 0.002353 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.154720 B =11896.586608 C =12673.194256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.131 4.131 3 C -0.084 4.084 4 C -0.167 4.167 5 C 0.099 3.901 6 O -0.314 6.314 7 C 0.078 3.922 8 H 0.126 0.874 9 C -0.171 4.171 10 C 0.508 3.492 11 O -0.551 6.551 12 N -0.650 5.650 13 C 0.146 3.854 14 C -0.231 4.231 15 C -0.090 4.090 16 C -0.235 4.235 17 C 0.091 3.909 18 C -0.501 4.501 19 H 0.074 0.926 20 C 0.035 3.965 21 N -0.836 5.836 22 Si 0.984 3.016 23 H -0.263 1.263 24 H -0.268 1.268 25 H -0.263 1.263 26 C -0.181 4.181 27 C -0.211 4.211 28 C -0.083 4.083 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.149 0.851 33 H 0.124 0.876 34 H 0.100 0.900 35 H 0.060 0.940 36 H 0.097 0.903 37 H 0.420 0.580 38 H 0.099 0.901 39 H 0.121 0.879 40 H 0.104 0.896 41 H 0.287 0.713 42 H 0.116 0.884 43 H 0.147 0.853 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.149 1.534 5.685 21.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.131 4.131 3 C -0.102 4.102 4 C -0.185 4.185 5 C 0.055 3.945 6 O -0.228 6.228 7 C 0.019 3.981 8 H 0.144 0.856 9 C -0.228 4.228 10 C 0.296 3.704 11 O -0.428 6.428 12 N -0.297 5.297 13 C 0.053 3.947 14 C -0.252 4.252 15 C -0.109 4.109 16 C -0.255 4.255 17 C 0.088 3.912 18 C -0.532 4.532 19 H 0.092 0.908 20 C -0.178 4.178 21 N -0.463 5.463 22 Si 0.805 3.195 23 H -0.188 1.188 24 H -0.193 1.193 25 H -0.187 1.187 26 C -0.203 4.203 27 C -0.230 4.230 28 C -0.101 4.101 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.167 0.833 33 H 0.142 0.858 34 H 0.119 0.881 35 H 0.079 0.921 36 H 0.116 0.884 37 H 0.258 0.742 38 H 0.118 0.882 39 H 0.139 0.861 40 H 0.122 0.878 41 H 0.097 0.903 42 H 0.134 0.866 43 H 0.164 0.836 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -20.914 2.284 5.594 21.769 hybrid contribution 0.895 -0.795 0.067 1.199 sum -20.019 1.489 5.661 20.857 Atomic orbital electron populations 1.20767 0.88981 1.03695 1.02926 1.20248 0.97812 0.92753 1.02305 1.21127 0.92064 0.99260 0.97706 1.20655 0.94841 0.96227 1.06807 1.19369 0.81453 0.95633 0.98085 1.86172 1.17504 1.31028 1.88112 1.22210 0.89847 0.85552 1.00529 0.85647 1.22359 1.05318 1.01824 0.93300 1.20883 0.87312 0.84435 0.77800 1.90718 1.73551 1.25497 1.52992 1.43243 1.18661 1.10136 1.57655 1.17638 0.85399 0.97794 0.93881 1.20511 0.98719 1.03049 1.02956 1.20755 0.92767 0.98403 0.98930 1.21343 0.98998 1.02067 1.03078 1.17801 0.93219 0.91108 0.89067 1.19721 0.94158 0.94859 1.44470 0.90763 1.26634 0.99501 0.99514 0.92188 1.69795 1.23253 1.15980 1.37269 0.85168 0.78111 0.76971 0.79206 1.18824 1.19255 1.18730 1.21051 0.92894 1.02486 1.03854 1.21531 0.96178 0.96943 1.08306 1.21188 0.92812 0.98994 0.97125 0.90692 0.90546 0.90756 0.83322 0.85772 0.88124 0.92133 0.88396 0.74202 0.88244 0.86138 0.87762 0.90291 0.86608 0.83575 0.83223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 10.01 71.24 0.71 -0.30 16 2 C -0.13 -2.05 5.88 -19.85 -0.12 -2.16 16 3 C -0.08 -1.49 9.69 22.25 0.22 -1.27 16 4 C -0.17 -3.91 9.99 22.37 0.22 -3.68 16 5 C 0.10 2.52 6.60 22.51 0.15 2.66 16 6 O -0.31 -9.70 9.34 -73.40 -0.69 -10.38 16 7 C 0.08 2.05 2.64 29.85 0.08 2.13 16 8 H 0.13 2.55 6.29 -2.38 -0.02 2.53 16 9 C -0.17 -3.42 9.12 71.98 0.66 -2.77 16 10 C 0.51 18.64 6.89 87.66 0.60 19.25 16 11 O -0.55 -25.69 14.30 15.94 0.23 -25.46 16 12 N -0.65 -23.95 5.30 -303.65 -1.61 -25.56 16 13 C 0.15 6.85 6.24 38.10 0.24 7.08 16 14 C -0.23 -11.19 8.66 22.58 0.20 -11.00 16 15 C -0.09 -4.24 10.02 22.20 0.22 -4.02 16 16 C -0.24 -11.86 9.79 22.75 0.22 -11.63 16 17 C 0.09 4.91 5.50 -21.31 -0.12 4.80 16 18 C -0.50 -26.81 9.04 23.46 0.21 -26.59 16 19 H 0.07 3.86 7.85 -2.91 -0.02 3.84 16 20 C 0.03 1.71 5.31 85.25 0.45 2.16 16 21 N -0.84 -41.75 10.96 21.82 0.24 -41.51 16 22 Si 0.98 37.66 29.56 68.60 2.03 39.69 16 23 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 24 H -0.27 -9.72 7.11 99.48 0.71 -9.01 16 25 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 26 C -0.18 -9.30 8.53 22.85 0.20 -9.10 16 27 C -0.21 -4.10 8.25 22.37 0.18 -3.91 16 28 C -0.08 -1.33 9.69 22.25 0.22 -1.11 16 29 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.08 0.55 8.08 -2.39 -0.02 0.53 16 31 H 0.07 0.57 8.08 -2.39 -0.02 0.55 16 32 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 33 H 0.12 2.94 8.06 -2.91 -0.02 2.91 16 34 H 0.10 1.62 7.77 -2.39 -0.02 1.60 16 35 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.10 1.53 6.94 -2.39 -0.02 1.51 16 37 H 0.42 12.29 8.43 -92.71 -0.78 11.51 16 38 H 0.10 4.81 6.52 -2.91 -0.02 4.79 16 39 H 0.12 4.89 8.06 -2.91 -0.02 4.87 16 40 H 0.10 4.91 8.06 -2.91 -0.02 4.89 16 41 H 0.29 12.89 8.30 -92.71 -0.77 12.12 16 42 H 0.12 5.98 6.47 -2.91 -0.02 5.96 16 43 H 0.15 2.22 5.44 -2.91 -0.02 2.21 16 44 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 Total: -1.00 -69.82 369.39 4.99 -64.83 By element: Atomic # 1 Polarization: 37.62 SS G_CDS: 0.25 Total: 37.87 kcal Atomic # 6 Polarization: -44.01 SS G_CDS: 4.54 Total: -39.47 kcal Atomic # 7 Polarization: -65.70 SS G_CDS: -1.37 Total: -67.07 kcal Atomic # 8 Polarization: -35.39 SS G_CDS: -0.46 Total: -35.85 kcal Atomic # 14 Polarization: 37.66 SS G_CDS: 2.03 Total: 39.69 kcal Total: -69.82 4.99 -64.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001533223489.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.375 kcal (2) G-P(sol) polarization free energy of solvation -69.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds