Wall clock time and date at job start Tue Mar 31 2020 14:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47123 * 2 1 4 4 C 1.38301 * 119.96673 * 270.02621 * 3 2 1 5 5 C 1.38265 * 120.14614 * 179.97438 * 4 3 2 6 6 C 1.38129 * 120.07230 * 359.69516 * 5 4 3 7 7 C 1.38872 * 119.92600 * 0.55877 * 6 5 4 8 8 N 1.39846 * 120.07314 * 179.74397 * 7 6 5 9 9 C 1.46497 * 120.00098 * 187.84233 * 8 7 6 10 10 C 1.34770 * 119.99927 * 7.84742 * 8 7 6 11 11 O 1.21611 * 120.00503 * 5.46022 * 10 8 7 12 12 C 1.47501 * 120.00297 * 185.18758 * 10 8 7 13 13 C 1.39683 * 120.19674 * 325.93760 * 12 10 8 14 14 C 1.37823 * 119.91911 * 179.97438 * 13 12 10 15 15 C 1.38576 * 120.32520 * 359.97438 * 14 13 12 16 16 C 1.38024 * 120.40447 * 0.02562 * 15 14 13 17 17 C 1.38831 * 120.07507 * 359.71803 * 16 15 14 18 18 O 1.35518 * 120.16797 * 180.30662 * 17 16 15 19 19 C 1.34813 * 116.99862 * 5.48092 * 18 17 16 20 20 H 1.08002 * 119.99768 * 354.94240 * 19 18 17 21 21 C 1.38700 * 120.00221 * 174.93627 * 19 18 17 22 22 N 1.31516 * 120.00047 * 180.02562 * 21 19 18 23 23 Si 1.86794 * 119.99731 * 0.02562 * 21 19 18 24 24 H 1.48506 * 109.47179 * 90.00135 * 23 21 19 25 25 H 1.48503 * 109.47264 * 210.00226 * 23 21 19 26 26 H 1.48501 * 109.47426 * 330.00014 * 23 21 19 27 27 C 1.38088 * 119.95946 * 89.99704 * 3 2 1 28 28 H 1.09005 * 109.47269 * 60.00235 * 1 2 3 29 29 H 1.09006 * 109.46936 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47123 * 299.99653 * 1 2 3 31 31 H 1.09004 * 109.47236 * 240.00717 * 2 1 3 32 32 H 1.08995 * 109.47382 * 120.00329 * 2 1 3 33 33 H 1.08002 * 119.92664 * 359.97438 * 4 3 2 34 34 H 1.08007 * 119.96430 * 179.97438 * 5 4 3 35 35 H 1.08002 * 120.03578 * 180.27681 * 6 5 4 36 36 H 1.08999 * 109.47510 * 275.50081 * 9 8 7 37 37 H 1.09006 * 109.46940 * 35.49485 * 9 8 7 38 38 H 1.09003 * 109.47110 * 155.49063 * 9 8 7 39 39 H 1.07998 * 120.04135 * 0.02562 * 13 12 10 40 40 H 1.08001 * 119.83775 * 179.97438 * 14 13 12 41 41 H 1.08002 * 119.79979 * 179.97438 * 15 14 13 42 42 H 1.08003 * 119.96513 * 180.02562 * 16 15 14 43 43 H 0.97004 * 119.99675 * 179.97438 * 22 21 19 44 44 H 1.07999 * 120.04294 * 0.04879 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2621 2.0723 -1.1981 5 6 2.7224 3.3761 -1.2024 6 6 2.9484 4.0343 -0.0093 7 6 2.7238 3.3812 1.1956 8 7 2.9567 4.0429 2.4054 9 6 2.8860 3.3053 3.6691 10 6 3.2460 5.3592 2.4087 11 8 3.2073 5.9930 1.3715 12 6 3.6038 6.0325 3.6713 13 6 3.0145 5.6320 4.8727 14 6 3.3534 6.2648 6.0492 15 6 4.2774 7.2975 6.0472 16 6 4.8680 7.7042 4.8678 17 6 4.5428 7.0748 3.6738 18 8 5.1261 7.4685 2.5156 19 6 6.0972 8.3993 2.6049 20 1 6.3216 8.8558 3.5576 21 6 6.8081 8.7707 1.4734 22 7 7.7558 9.6784 1.5606 23 14 6.4196 7.9815 -0.1745 24 1 5.3776 8.7777 -0.8713 25 1 7.6494 7.9401 -1.0058 26 1 5.9229 6.5990 0.0435 27 6 2.2621 2.0710 1.1964 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 2.0815 1.5615 -2.1324 34 1 2.9013 3.8819 -2.1398 35 1 3.3038 5.0541 -0.0134 36 1 1.8502 3.2588 4.0053 37 1 3.2657 2.2942 3.5214 38 1 3.4897 3.8138 4.4209 39 1 2.2947 4.8268 4.8798 40 1 2.8966 5.9543 6.9773 41 1 4.5365 7.7878 6.9740 42 1 5.5875 8.5095 4.8744 43 1 8.2532 9.9378 0.7693 44 1 2.0828 1.5617 2.1317 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001583268456.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:15 Heat of formation + Delta-G solvation = 20.699584 kcal Electronic energy + Delta-G solvation = -27289.709878 eV Core-core repulsion = 23560.084576 eV Total energy + Delta-G solvation = -3729.625302 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.79914 -39.33357 -38.16011 -36.76177 -35.56170 -33.90792 -32.54553 -31.35915 -29.73907 -29.40059 -29.01528 -26.99059 -25.45793 -23.97687 -23.78614 -21.98866 -21.59495 -20.95636 -19.44657 -18.09431 -17.37814 -16.88146 -16.72227 -16.02755 -15.57936 -15.14927 -14.89726 -14.50097 -14.42738 -14.09701 -13.93109 -13.83074 -13.61421 -13.42013 -13.20576 -13.08245 -12.77419 -12.57433 -12.40401 -12.16749 -11.98215 -11.83972 -11.51387 -11.39866 -11.27723 -11.13769 -10.83072 -10.81655 -10.73243 -10.18612 -9.97028 -9.62519 -8.98847 -8.93474 -8.60254 -8.41468 -7.72832 -7.53638 -6.55215 -4.21069 1.32205 1.55964 1.69381 2.07180 3.00374 3.23348 3.24640 3.30198 3.49797 4.00463 4.22854 4.31579 4.58553 4.65682 4.80606 4.88228 4.98272 5.01926 5.12252 5.21495 5.28781 5.33300 5.35873 5.41788 5.51924 5.57421 5.63754 5.67266 5.70768 5.75102 5.82813 5.90922 5.96544 6.02448 6.20226 6.26805 6.40224 6.49318 6.62208 6.73546 6.78657 6.84752 6.90653 7.06074 7.35770 7.39242 7.52122 7.64412 7.86233 8.52361 8.79163 9.39442 10.50131 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012402 B = 0.004346 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.201914 B = 6441.523277 C = 8481.810217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.081 4.081 3 C -0.065 4.065 4 C -0.152 4.152 5 C -0.094 4.094 6 C -0.168 4.168 7 C 0.168 3.832 8 N -0.558 5.558 9 C 0.056 3.944 10 C 0.570 3.430 11 O -0.497 6.497 12 C -0.227 4.227 13 C -0.054 4.054 14 C -0.219 4.219 15 C -0.049 4.049 16 C -0.224 4.224 17 C 0.203 3.797 18 O -0.178 6.178 19 C -0.395 4.395 20 H 0.110 0.890 21 C 0.072 3.928 22 N -0.867 5.867 23 Si 0.903 3.097 24 H -0.269 1.269 25 H -0.283 1.283 26 H -0.251 1.251 27 C -0.165 4.165 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.115 0.885 34 H 0.121 0.879 35 H 0.177 0.823 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.104 0.896 39 H 0.130 0.870 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.140 0.860 43 H 0.283 0.717 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.105 -16.626 2.774 20.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 C -0.066 4.066 4 C -0.171 4.171 5 C -0.113 4.113 6 C -0.187 4.187 7 C 0.073 3.927 8 N -0.281 5.281 9 C -0.086 4.086 10 C 0.363 3.637 11 O -0.373 6.373 12 C -0.232 4.232 13 C -0.072 4.072 14 C -0.238 4.238 15 C -0.068 4.068 16 C -0.243 4.243 17 C 0.146 3.854 18 O -0.078 6.078 19 C -0.470 4.470 20 H 0.128 0.872 21 C -0.134 4.134 22 N -0.502 5.502 23 Si 0.728 3.272 24 H -0.195 1.195 25 H -0.209 1.209 26 H -0.175 1.175 27 C -0.185 4.185 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.133 0.867 34 H 0.139 0.861 35 H 0.194 0.806 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.123 0.877 39 H 0.148 0.852 40 H 0.133 0.867 41 H 0.133 0.867 42 H 0.157 0.843 43 H 0.093 0.907 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.935 -16.126 1.923 19.579 hybrid contribution 0.029 -0.156 -0.492 0.517 sum -10.906 -16.283 1.431 19.650 Atomic orbital electron populations 1.21741 0.94882 1.01369 1.02308 1.20494 0.96039 0.92748 1.02551 1.19538 0.98703 0.95748 0.92599 1.20912 1.03664 0.95440 0.97106 1.21133 0.97935 0.94275 0.97961 1.22631 1.01498 1.04361 0.90235 1.17980 0.97227 0.91934 0.85533 1.45343 1.67664 1.09237 1.05833 1.22575 1.02369 0.97636 0.86065 1.18412 0.75835 0.80075 0.89379 1.90509 1.49880 1.64162 1.32752 1.18607 1.08426 1.03292 0.92871 1.21253 0.97390 0.97502 0.91104 1.20581 1.04325 1.01521 0.97350 1.21004 0.93896 0.94791 0.97101 1.21278 1.06219 1.04921 0.91861 1.18931 0.90437 0.89912 0.86105 1.83668 1.45728 1.51774 1.26680 1.20891 1.11172 1.15855 0.99091 0.87245 1.24489 0.93989 0.95456 0.99448 1.69626 1.20281 1.28744 1.31564 0.86178 0.77727 0.81980 0.81341 1.19461 1.20905 1.17461 1.20586 1.05930 0.93860 0.98162 0.92557 0.92630 0.92582 0.91171 0.91278 0.86685 0.86074 0.80619 0.91761 0.91025 0.87744 0.85241 0.86738 0.86663 0.84253 0.90693 0.86050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.89 37.16 0.37 -0.82 16 2 C -0.08 -0.74 6.06 -27.88 -0.17 -0.90 16 3 C -0.07 -0.81 5.13 -104.65 -0.54 -1.34 16 4 C -0.15 -1.98 9.70 -39.55 -0.38 -2.37 16 5 C -0.09 -1.44 10.04 -39.61 -0.40 -1.84 16 6 C -0.17 -3.07 8.97 -39.39 -0.35 -3.42 16 7 C 0.17 2.81 6.48 -83.72 -0.54 2.27 16 8 N -0.56 -9.32 3.10 -122.00 -0.38 -9.70 16 9 C 0.06 0.65 7.95 59.85 0.48 1.12 16 10 C 0.57 11.74 7.19 -12.49 -0.09 11.65 16 11 O -0.50 -11.97 12.43 -12.61 -0.16 -12.13 16 12 C -0.23 -4.52 5.44 -104.81 -0.57 -5.09 16 13 C -0.05 -0.84 7.41 -39.19 -0.29 -1.13 16 14 C -0.22 -3.20 10.02 -39.61 -0.40 -3.59 16 15 C -0.05 -0.80 10.03 -39.54 -0.40 -1.20 16 16 C -0.22 -4.55 9.16 -39.44 -0.36 -4.92 16 17 C 0.20 4.67 6.63 -38.59 -0.26 4.41 16 18 O -0.18 -4.76 7.21 -17.07 -0.12 -4.89 16 19 C -0.40 -11.04 9.95 30.90 0.31 -10.73 16 20 H 0.11 3.04 5.44 -52.49 -0.29 2.75 16 21 C 0.07 2.03 5.49 -17.52 -0.10 1.93 16 22 N -0.87 -24.73 13.96 55.48 0.77 -23.95 16 23 Si 0.90 22.70 28.62 -169.99 -4.86 17.84 16 24 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.25 -6.57 7.11 56.52 0.40 -6.17 16 27 C -0.16 -2.21 8.81 -39.38 -0.35 -2.56 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 32 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 33 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.12 1.63 8.06 -52.48 -0.42 1.21 16 35 H 0.18 3.81 4.71 -55.23 -0.26 3.55 16 36 H 0.06 0.60 7.52 -51.93 -0.39 0.21 16 37 H 0.07 0.70 6.91 -51.93 -0.36 0.34 16 38 H 0.10 1.23 4.68 -51.93 -0.24 0.99 16 39 H 0.13 1.55 5.02 -52.49 -0.26 1.29 16 40 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 41 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 42 H 0.14 2.95 5.64 -52.48 -0.30 2.65 16 43 H 0.28 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.12 1.33 6.52 -52.49 -0.34 0.98 16 LS Contribution 358.55 15.07 5.40 5.40 Total: -1.00 -31.85 358.55 -8.75 -40.60 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -5.37 Total: 5.36 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: -4.04 Total: -18.54 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: 0.40 Total: -33.65 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -0.28 Total: -17.01 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -4.86 Total: 17.84 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.85 -8.75 -40.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583268456.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.304 kcal (2) G-P(sol) polarization free energy of solvation -31.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds