Wall clock time and date at job start Tue Mar 31 2020 14:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47123 * 2 1 4 4 C 1.38301 * 119.96673 * 270.02621 * 3 2 1 5 5 C 1.38265 * 120.14614 * 179.97438 * 4 3 2 6 6 C 1.38129 * 120.07230 * 359.69516 * 5 4 3 7 7 C 1.38872 * 119.92600 * 0.55877 * 6 5 4 8 8 N 1.39846 * 120.07314 * 179.74397 * 7 6 5 9 9 C 1.46497 * 120.00098 * 187.84233 * 8 7 6 10 10 C 1.34770 * 119.99927 * 7.84742 * 8 7 6 11 11 O 1.21611 * 120.00503 * 5.46022 * 10 8 7 12 12 C 1.47501 * 120.00297 * 185.18758 * 10 8 7 13 13 C 1.39683 * 120.19674 * 325.93760 * 12 10 8 14 14 C 1.37823 * 119.91911 * 179.97438 * 13 12 10 15 15 C 1.38576 * 120.32520 * 359.97438 * 14 13 12 16 16 C 1.38024 * 120.40447 * 0.02562 * 15 14 13 17 17 C 1.38831 * 120.07507 * 359.71803 * 16 15 14 18 18 O 1.35518 * 120.16797 * 180.30662 * 17 16 15 19 19 C 1.34813 * 116.99862 * 5.48092 * 18 17 16 20 20 H 1.08002 * 119.99768 * 354.94240 * 19 18 17 21 21 C 1.38700 * 120.00221 * 174.93627 * 19 18 17 22 22 N 1.31516 * 120.00047 * 180.02562 * 21 19 18 23 23 Si 1.86794 * 119.99731 * 0.02562 * 21 19 18 24 24 H 1.48506 * 109.47179 * 90.00135 * 23 21 19 25 25 H 1.48503 * 109.47264 * 210.00226 * 23 21 19 26 26 H 1.48501 * 109.47426 * 330.00014 * 23 21 19 27 27 C 1.38088 * 119.95946 * 89.99704 * 3 2 1 28 28 H 1.09005 * 109.47269 * 60.00235 * 1 2 3 29 29 H 1.09006 * 109.46936 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47123 * 299.99653 * 1 2 3 31 31 H 1.09004 * 109.47236 * 240.00717 * 2 1 3 32 32 H 1.08995 * 109.47382 * 120.00329 * 2 1 3 33 33 H 1.08002 * 119.92664 * 359.97438 * 4 3 2 34 34 H 1.08007 * 119.96430 * 179.97438 * 5 4 3 35 35 H 1.08002 * 120.03578 * 180.27681 * 6 5 4 36 36 H 1.08999 * 109.47510 * 275.50081 * 9 8 7 37 37 H 1.09006 * 109.46940 * 35.49485 * 9 8 7 38 38 H 1.09003 * 109.47110 * 155.49063 * 9 8 7 39 39 H 1.07998 * 120.04135 * 0.02562 * 13 12 10 40 40 H 1.08001 * 119.83775 * 179.97438 * 14 13 12 41 41 H 1.08002 * 119.79979 * 179.97438 * 15 14 13 42 42 H 1.08003 * 119.96513 * 180.02562 * 16 15 14 43 43 H 0.97004 * 119.99675 * 179.97438 * 22 21 19 44 44 H 1.07999 * 120.04294 * 0.04879 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2621 2.0723 -1.1981 5 6 2.7224 3.3761 -1.2024 6 6 2.9484 4.0343 -0.0093 7 6 2.7238 3.3812 1.1956 8 7 2.9567 4.0429 2.4054 9 6 2.8860 3.3053 3.6691 10 6 3.2460 5.3592 2.4087 11 8 3.2073 5.9930 1.3715 12 6 3.6038 6.0325 3.6713 13 6 3.0145 5.6320 4.8727 14 6 3.3534 6.2648 6.0492 15 6 4.2774 7.2975 6.0472 16 6 4.8680 7.7042 4.8678 17 6 4.5428 7.0748 3.6738 18 8 5.1261 7.4685 2.5156 19 6 6.0972 8.3993 2.6049 20 1 6.3216 8.8558 3.5576 21 6 6.8081 8.7707 1.4734 22 7 7.7558 9.6784 1.5606 23 14 6.4196 7.9815 -0.1745 24 1 5.3776 8.7777 -0.8713 25 1 7.6494 7.9401 -1.0058 26 1 5.9229 6.5990 0.0435 27 6 2.2621 2.0710 1.1964 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 2.0815 1.5615 -2.1324 34 1 2.9013 3.8819 -2.1398 35 1 3.3038 5.0541 -0.0134 36 1 1.8502 3.2588 4.0053 37 1 3.2657 2.2942 3.5214 38 1 3.4897 3.8138 4.4209 39 1 2.2947 4.8268 4.8798 40 1 2.8966 5.9543 6.9773 41 1 4.5365 7.7878 6.9740 42 1 5.5875 8.5095 4.8744 43 1 8.2532 9.9378 0.7693 44 1 2.0828 1.5617 2.1317 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001583268456.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:14 Heat of formation + Delta-G solvation = 2.704543 kcal Electronic energy + Delta-G solvation = -27290.490202 eV Core-core repulsion = 23560.084576 eV Total energy + Delta-G solvation = -3730.405626 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.17472 -40.80879 -39.51528 -38.33194 -36.90018 -34.82953 -34.57794 -32.70484 -30.94255 -30.83230 -30.10044 -28.09381 -27.38524 -25.18628 -24.84277 -23.42215 -22.79105 -22.19868 -20.80987 -19.95134 -18.97261 -18.21710 -18.00357 -17.31197 -16.93956 -16.66850 -16.12573 -15.94159 -15.80170 -15.61022 -15.34967 -15.26724 -14.65466 -14.55772 -14.46673 -14.32257 -14.20451 -14.14777 -13.81061 -13.50514 -13.18018 -13.08905 -12.83242 -12.67634 -12.55483 -12.40740 -12.24227 -12.03240 -11.93238 -11.68504 -11.48409 -11.11940 -11.02492 -10.42221 -9.85138 -9.70805 -9.23490 -8.85510 -8.63237 -6.32238 -0.07174 0.42390 0.45544 0.59059 1.17575 1.23311 1.43936 1.68563 1.87019 2.18883 2.66581 2.85887 2.92964 3.04723 3.46821 3.84800 3.90866 3.96217 4.10495 4.19980 4.24731 4.37660 4.44163 4.45073 4.48821 4.51042 4.57357 4.62718 4.68659 4.70580 4.74856 4.81033 5.00540 5.09368 5.11410 5.16323 5.23921 5.32966 5.42653 5.43143 5.55339 5.58426 5.63041 5.65598 5.71855 5.79615 6.10732 6.14667 6.29798 6.72968 7.06636 7.50543 8.47610 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012402 B = 0.004346 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.201914 B = 6441.523277 C = 8481.810217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.078 4.078 3 C -0.060 4.060 4 C -0.147 4.147 5 C -0.106 4.106 6 C -0.210 4.210 7 C 0.144 3.856 8 N -0.553 5.553 9 C 0.042 3.958 10 C 0.555 3.445 11 O -0.548 6.548 12 C -0.232 4.232 13 C -0.043 4.043 14 C -0.184 4.184 15 C -0.040 4.040 16 C -0.247 4.247 17 C 0.163 3.837 18 O -0.224 6.224 19 C -0.400 4.400 20 H 0.096 0.904 21 C 0.028 3.972 22 N -0.908 5.908 23 Si 0.954 3.046 24 H -0.274 1.274 25 H -0.260 1.260 26 H -0.279 1.279 27 C -0.153 4.153 28 H 0.048 0.952 29 H 0.075 0.925 30 H 0.052 0.948 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.144 0.856 34 H 0.125 0.875 35 H 0.133 0.867 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.177 0.823 40 H 0.172 0.828 41 H 0.154 0.846 42 H 0.117 0.883 43 H 0.287 0.713 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.196 -21.465 5.618 26.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 C -0.060 4.060 4 C -0.166 4.166 5 C -0.125 4.125 6 C -0.230 4.230 7 C 0.050 3.950 8 N -0.275 5.275 9 C -0.098 4.098 10 C 0.348 3.652 11 O -0.427 6.427 12 C -0.237 4.237 13 C -0.061 4.061 14 C -0.202 4.202 15 C -0.058 4.058 16 C -0.266 4.266 17 C 0.110 3.890 18 O -0.129 6.129 19 C -0.476 4.476 20 H 0.113 0.887 21 C -0.173 4.173 22 N -0.548 5.548 23 Si 0.779 3.221 24 H -0.200 1.200 25 H -0.185 1.185 26 H -0.205 1.205 27 C -0.174 4.174 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.162 0.838 34 H 0.143 0.857 35 H 0.150 0.850 36 H 0.119 0.881 37 H 0.115 0.885 38 H 0.122 0.878 39 H 0.194 0.806 40 H 0.190 0.810 41 H 0.172 0.828 42 H 0.135 0.865 43 H 0.097 0.903 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -14.057 -21.027 4.818 25.748 hybrid contribution 0.669 1.026 -1.067 1.624 sum -13.388 -20.001 3.752 24.359 Atomic orbital electron populations 1.21736 0.94045 1.02561 1.01843 1.20581 0.96548 0.90199 1.04166 1.20057 0.96776 0.97383 0.91803 1.21254 1.02107 0.94231 0.99007 1.21256 0.98462 0.95616 0.97164 1.22386 1.04441 1.03343 0.92801 1.18198 0.98669 0.93309 0.84855 1.45385 1.66322 1.08076 1.07704 1.22979 1.04826 0.98216 0.83732 1.18744 0.75874 0.81597 0.88984 1.90534 1.52001 1.65906 1.34309 1.19031 1.07557 1.02422 0.94660 1.21839 0.96921 0.97995 0.89367 1.21295 1.01322 0.98489 0.99057 1.21495 0.92864 0.94819 0.96666 1.21329 1.07216 1.05090 0.92981 1.19654 0.91533 0.91526 0.86239 1.83658 1.47218 1.53236 1.28748 1.20863 1.11822 1.16344 0.98599 0.88693 1.24989 0.94466 0.96315 1.01484 1.69667 1.22063 1.30828 1.32249 0.85455 0.77857 0.79448 0.79362 1.19985 1.18461 1.20452 1.20924 1.04172 0.92110 1.00147 0.93258 0.90652 0.92898 0.89848 0.89508 0.83834 0.85678 0.85040 0.88057 0.88517 0.87813 0.80616 0.81025 0.82834 0.86513 0.90333 0.82608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.89 71.98 0.71 -1.02 16 2 C -0.08 -1.04 6.06 29.85 0.18 -0.85 16 3 C -0.06 -1.27 5.13 -19.88 -0.10 -1.37 16 4 C -0.15 -3.56 9.70 22.29 0.22 -3.35 16 5 C -0.11 -3.35 10.04 22.25 0.22 -3.13 16 6 C -0.21 -8.20 8.97 22.40 0.20 -8.00 16 7 C 0.14 4.77 6.48 38.18 0.25 5.02 16 8 N -0.55 -17.97 3.10 -658.16 -2.04 -20.01 16 9 C 0.04 0.79 7.95 127.77 1.02 1.81 16 10 C 0.55 23.70 7.19 86.69 0.62 24.32 16 11 O -0.55 -28.83 12.43 13.03 0.16 -28.67 16 12 C -0.23 -9.25 5.44 -19.99 -0.11 -9.36 16 13 C -0.04 -1.16 7.41 22.52 0.17 -0.99 16 14 C -0.18 -4.27 10.02 22.25 0.22 -4.04 16 15 C -0.04 -1.18 10.03 22.30 0.22 -0.96 16 16 C -0.25 -10.33 9.16 22.36 0.20 -10.12 16 17 C 0.16 7.88 6.63 22.91 0.15 8.03 16 18 O -0.22 -13.08 7.21 -2.93 -0.02 -13.11 16 19 C -0.40 -24.42 9.95 67.93 0.68 -23.74 16 20 H 0.10 5.82 5.44 -2.91 -0.02 5.81 16 21 C 0.03 1.70 5.49 84.85 0.47 2.17 16 22 N -0.91 -55.45 13.96 21.62 0.30 -55.15 16 23 Si 0.95 51.16 28.62 68.60 1.96 53.12 16 24 H -0.27 -14.61 7.11 99.48 0.71 -13.91 16 25 H -0.26 -12.67 7.11 99.48 0.71 -11.97 16 26 H -0.28 -16.06 7.11 99.48 0.71 -15.35 16 27 C -0.15 -3.63 8.81 22.40 0.20 -3.43 16 28 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.07 0.63 8.14 -2.38 -0.02 0.62 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.08 0.95 8.09 -2.39 -0.02 0.93 16 32 H 0.09 0.91 8.08 -2.39 -0.02 0.89 16 33 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 34 H 0.13 3.62 8.06 -2.91 -0.02 3.59 16 35 H 0.13 6.43 4.71 -46.44 -0.22 6.21 16 36 H 0.10 1.21 7.52 -2.39 -0.02 1.19 16 37 H 0.10 1.38 6.91 -2.38 -0.02 1.37 16 38 H 0.10 1.96 4.68 -2.39 -0.01 1.95 16 39 H 0.18 3.07 5.02 -2.91 -0.01 3.06 16 40 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 41 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 42 H 0.12 5.35 5.64 -2.91 -0.02 5.33 16 43 H 0.29 16.11 8.31 -92.70 -0.77 15.34 16 44 H 0.16 2.53 6.52 -2.91 -0.02 2.51 16 Total: -1.00 -82.48 358.55 6.72 -75.76 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: 0.83 Total: 17.08 kcal Atomic # 6 Polarization: -34.55 SS G_CDS: 5.52 Total: -29.03 kcal Atomic # 7 Polarization: -73.42 SS G_CDS: -1.74 Total: -75.16 kcal Atomic # 8 Polarization: -41.91 SS G_CDS: 0.14 Total: -41.77 kcal Atomic # 14 Polarization: 51.16 SS G_CDS: 1.96 Total: 53.12 kcal Total: -82.48 6.72 -75.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583268456.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.465 kcal (2) G-P(sol) polarization free energy of solvation -82.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds