Wall clock time and date at job start Tue Mar 31 2020 13:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35893 * 116.99834 * 2 1 4 4 C 1.38814 * 120.02097 * 359.97438 * 3 2 1 5 5 C 1.38179 * 120.09193 * 180.02562 * 4 3 2 6 6 C 1.50696 * 119.93798 * 180.02562 * 5 4 3 7 7 C 1.38161 * 120.12702 * 359.74399 * 5 4 3 8 8 C 1.38926 * 120.03702 * 0.50703 * 7 5 4 9 9 N 1.39797 * 120.04913 * 179.76944 * 8 7 5 10 10 C 1.34781 * 119.99774 * 327.85553 * 9 8 7 11 11 O 1.21623 * 120.00047 * 4.28899 * 10 9 8 12 12 C 1.47383 * 120.00113 * 184.28910 * 10 9 8 13 13 C 1.39248 * 120.28219 * 5.25819 * 12 10 9 14 14 C 1.38205 * 120.09114 * 179.72949 * 13 12 10 15 15 C 1.38838 * 120.67671 * 0.29053 * 14 13 12 16 16 C 1.37591 * 120.57833 * 359.97438 * 15 14 13 17 17 C 1.40707 * 119.87951 * 359.97438 * 16 15 14 18 18 C 1.40876 * 120.32938 * 180.02562 * 17 16 15 19 19 H 1.07997 * 119.99696 * 213.35711 * 18 17 16 20 20 C 1.40276 * 120.00076 * 33.35295 * 18 17 16 21 21 N 1.30627 * 120.00078 * 9.15750 * 20 18 17 22 22 Si 1.86797 * 120.00134 * 189.16040 * 20 18 17 23 23 H 1.48501 * 109.47146 * 59.99787 * 22 20 18 24 24 H 1.48497 * 109.47162 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47097 * 299.99818 * 22 20 18 26 26 C 1.38576 * 120.01927 * 180.02562 * 3 2 1 27 27 C 1.50703 * 120.06188 * 359.95719 * 26 3 2 28 28 H 1.09000 * 109.46663 * 300.00067 * 1 2 3 29 29 H 1.08996 * 109.47013 * 59.99808 * 1 2 3 30 30 H 1.08999 * 109.46984 * 179.97438 * 1 2 3 31 31 H 1.08002 * 119.95464 * 0.03802 * 4 3 2 32 32 H 1.08997 * 109.47368 * 89.99936 * 6 5 4 33 33 H 1.09004 * 109.47305 * 209.99817 * 6 5 4 34 34 H 1.09001 * 109.46978 * 329.99693 * 6 5 4 35 35 H 1.08001 * 119.98208 * 180.28214 * 7 5 4 36 36 H 0.96999 * 120.00190 * 147.85386 * 9 8 7 37 37 H 1.08006 * 119.95570 * 0.02562 * 13 12 10 38 38 H 1.07995 * 119.66092 * 180.27963 * 14 13 12 39 39 H 1.08002 * 119.71459 * 179.97438 * 15 14 13 40 40 H 1.08001 * 120.05775 * 180.02562 * 16 15 14 41 41 H 0.96995 * 120.00196 * 180.02562 * 21 20 18 42 42 H 1.09003 * 109.47478 * 270.02742 * 27 26 3 43 43 H 1.09005 * 109.47180 * 30.02209 * 27 26 3 44 44 H 1.08997 * 109.47560 * 150.02162 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2903 2.3753 -0.0005 5 6 1.9161 3.6073 -0.0011 6 6 1.0924 4.8692 -0.0011 7 6 3.2956 3.6844 0.0043 8 6 4.0570 2.5224 -0.0005 9 7 5.4528 2.6002 0.0001 10 6 6.0708 3.6270 -0.6166 11 8 5.4143 4.5264 -1.1059 12 6 7.5420 3.6601 -0.6981 13 6 8.2951 2.5830 -0.2379 14 6 9.6742 2.6158 -0.3214 15 6 10.3254 3.7190 -0.8565 16 6 9.6089 4.8007 -1.3144 17 6 8.2037 4.7922 -1.2419 18 6 7.4607 5.8944 -1.7085 19 1 6.5359 6.1670 -1.2219 20 6 7.9220 6.6378 -2.8050 21 7 8.9385 6.2083 -3.5041 22 14 7.0829 8.2419 -3.2654 23 1 7.1700 9.1908 -2.1265 24 1 7.7550 8.8292 -4.4522 25 1 5.6563 7.9806 -3.5840 26 6 3.4298 1.2839 -0.0005 27 6 4.2524 0.0212 -0.0001 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2118 2.3183 -0.0003 32 1 0.8941 5.1737 1.0265 33 1 1.6389 5.6598 -0.5153 34 1 0.1484 4.6868 -0.5146 35 1 3.7822 4.6485 0.0084 36 1 5.9766 1.9152 0.4443 37 1 7.8005 1.7187 0.1804 38 1 10.2512 1.7747 0.0334 39 1 11.4039 3.7283 -0.9138 40 1 10.1241 5.6544 -1.7294 41 1 9.2577 6.7225 -4.2620 42 1 4.4508 -0.2830 1.0276 43 1 3.7050 -0.7693 -0.5137 44 1 5.1964 0.2023 -0.5141 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001586924795.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:05 Heat of formation + Delta-G solvation = -31.460093 kcal Electronic energy + Delta-G solvation = -27089.930096 eV Core-core repulsion = 23358.042980 eV Total energy + Delta-G solvation = -3731.887116 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.46338 -39.19553 -37.59816 -36.56405 -34.70513 -33.76279 -32.53787 -30.32116 -29.74808 -29.07530 -28.46610 -27.57625 -25.55301 -24.57823 -23.03780 -21.73080 -21.07597 -20.38666 -19.50569 -17.81774 -17.32575 -16.79283 -15.89667 -15.75573 -15.61233 -15.27796 -15.08913 -14.36409 -14.17811 -14.05227 -13.62371 -13.41692 -13.18574 -13.07627 -12.77662 -12.77281 -12.67045 -12.36512 -11.99762 -11.80426 -11.75070 -11.64703 -11.31730 -11.20473 -11.14704 -10.86099 -10.76613 -10.71362 -10.58101 -10.12823 -9.78032 -9.52806 -9.31883 -8.49612 -7.87458 -7.73723 -7.55622 -7.42710 -6.86898 -4.46879 1.49404 1.72620 2.29381 2.77182 3.06012 3.11322 3.20415 3.21483 3.82018 3.88550 3.92508 4.17808 4.61546 4.85480 5.02924 5.06021 5.08028 5.28290 5.33189 5.36173 5.54798 5.59727 5.71092 5.74800 5.79093 5.81498 5.91748 5.95407 5.96309 6.16831 6.23791 6.37152 6.43577 6.54410 6.65699 6.75397 6.89517 6.91880 7.04737 7.13373 7.31061 7.38931 7.55420 7.56638 7.81258 7.90182 8.09661 8.19312 8.57386 8.73898 8.80951 9.19833 10.07494 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013345 B = 0.003913 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.629560 B = 7153.145845 C = 8881.363344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.316 6.316 3 C 0.142 3.858 4 C -0.234 4.234 5 C -0.038 4.038 6 C -0.112 4.112 7 C -0.159 4.159 8 C 0.209 3.791 9 N -0.683 5.683 10 C 0.562 3.438 11 O -0.515 6.515 12 C -0.266 4.266 13 C -0.056 4.056 14 C -0.243 4.243 15 C -0.095 4.095 16 C -0.146 4.146 17 C 0.147 3.853 18 C -0.414 4.414 19 H 0.106 0.894 20 C 0.070 3.930 21 N -0.789 5.789 22 Si 0.917 3.083 23 H -0.262 1.262 24 H -0.279 1.279 25 H -0.261 1.261 26 C -0.165 4.165 27 C -0.100 4.100 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.095 0.905 31 H 0.121 0.879 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.149 0.851 36 H 0.404 0.596 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.120 0.880 41 H 0.284 0.716 42 H 0.062 0.938 43 H 0.069 0.931 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.406 -7.162 6.076 14.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.230 6.230 3 C 0.097 3.903 4 C -0.254 4.254 5 C -0.039 4.039 6 C -0.169 4.169 7 C -0.179 4.179 8 C 0.112 3.888 9 N -0.328 5.328 10 C 0.359 3.641 11 O -0.392 6.392 12 C -0.271 4.271 13 C -0.075 4.075 14 C -0.262 4.262 15 C -0.114 4.114 16 C -0.165 4.165 17 C 0.143 3.857 18 C -0.441 4.441 19 H 0.124 0.876 20 C -0.149 4.149 21 N -0.413 5.413 22 Si 0.741 3.259 23 H -0.187 1.187 24 H -0.204 1.204 25 H -0.185 1.185 26 C -0.169 4.169 27 C -0.157 4.157 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.113 0.887 31 H 0.139 0.861 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.166 0.834 36 H 0.241 0.759 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.137 0.863 41 H 0.095 0.905 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.545 -6.614 5.468 14.385 hybrid contribution -0.247 0.240 -0.210 0.403 sum -11.792 -6.375 5.258 14.399 Atomic orbital electron populations 1.22983 0.78932 1.03367 1.01247 1.86018 1.20838 1.27096 1.89042 1.18346 0.91020 0.83853 0.97074 1.20888 0.99247 0.91778 1.13492 1.19525 0.93546 0.94311 0.96494 1.20770 0.98934 0.95058 1.02094 1.21301 0.92511 0.99219 1.04888 1.17345 0.83643 0.92193 0.95602 1.43793 1.03710 1.28983 1.56334 1.18600 0.88715 0.80145 0.76649 1.90658 1.66655 1.35835 1.46024 1.19285 0.89454 0.98176 1.20184 1.20644 0.94095 0.95549 0.97205 1.20288 0.93752 0.99901 1.12296 1.20824 0.97783 0.94391 0.98358 1.21391 0.93955 0.98601 1.02553 1.17445 0.91530 0.89874 0.86890 1.20185 1.06950 1.07154 1.09842 0.87621 1.26144 0.94024 0.98878 0.95867 1.69699 1.20894 1.36629 1.14111 0.86195 0.80602 0.80613 0.78454 1.18661 1.20381 1.18505 1.18811 0.90932 0.94674 1.12457 1.20476 0.99016 0.94483 1.01733 0.92870 0.92855 0.88654 0.86069 0.91273 0.90988 0.91932 0.83386 0.75934 0.89271 0.88950 0.88958 0.86256 0.90494 0.91886 0.91235 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.13 9.54 -19.40 -0.19 -4.32 16 3 C 0.14 2.13 6.66 -39.24 -0.26 1.87 16 4 C -0.23 -3.30 8.69 -39.39 -0.34 -3.64 16 5 C -0.04 -0.58 5.87 -104.67 -0.61 -1.20 16 6 C -0.11 -1.38 10.01 36.00 0.36 -1.02 16 7 C -0.16 -2.91 8.37 -39.35 -0.33 -3.23 16 8 C 0.21 3.78 6.33 -83.75 -0.53 3.25 16 9 N -0.68 -12.72 4.75 -10.86 -0.05 -12.77 16 10 C 0.56 12.84 7.57 -12.54 -0.09 12.74 16 11 O -0.51 -13.05 10.83 5.26 0.06 -12.99 16 12 C -0.27 -6.34 5.92 -104.37 -0.62 -6.96 16 13 C -0.06 -1.17 9.51 -39.22 -0.37 -1.54 16 14 C -0.24 -5.03 10.03 -39.37 -0.39 -5.43 16 15 C -0.09 -2.08 10.01 -39.60 -0.40 -2.48 16 16 C -0.15 -3.61 8.62 -38.89 -0.34 -3.95 16 17 C 0.15 3.84 5.52 -106.54 -0.59 3.25 16 18 C -0.41 -11.04 7.71 -37.82 -0.29 -11.34 16 19 H 0.11 2.89 5.88 -52.49 -0.31 2.58 16 20 C 0.07 1.76 5.26 -17.30 -0.09 1.67 16 21 N -0.79 -20.03 11.08 55.56 0.62 -19.42 16 22 Si 0.92 19.22 29.57 -169.99 -5.03 14.19 16 23 H -0.26 -5.36 7.11 56.52 0.40 -4.95 16 24 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 25 H -0.26 -5.61 7.11 56.52 0.40 -5.20 16 26 C -0.17 -2.65 5.91 -104.28 -0.62 -3.27 16 27 C -0.10 -1.36 9.24 36.01 0.33 -1.02 16 28 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 29 H 0.05 0.43 7.66 -51.93 -0.40 0.04 16 30 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.12 1.37 6.29 -52.49 -0.33 1.04 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.94 8.09 -51.93 -0.42 0.52 16 34 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 35 H 0.15 3.01 6.00 -52.49 -0.31 2.70 16 36 H 0.40 6.44 5.81 -40.82 -0.24 6.20 16 37 H 0.09 1.53 6.46 -52.48 -0.34 1.19 16 38 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 39 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 40 H 0.12 3.02 6.53 -52.49 -0.34 2.67 16 41 H 0.28 6.58 8.29 -40.82 -0.34 6.24 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 0.90 7.53 -51.93 -0.39 0.51 16 44 H 0.06 0.87 7.12 -51.93 -0.37 0.50 16 LS Contribution 360.05 15.07 5.43 5.43 Total: -1.00 -29.55 360.05 -8.87 -38.43 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -5.52 Total: 12.50 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: -4.19 Total: -21.05 kcal Atomic # 7 Polarization: -32.75 SS G_CDS: 0.56 Total: -32.19 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.13 Total: -17.31 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.55 -8.87 -38.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001586924795.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.967 kcal (2) G-P(sol) polarization free energy of solvation -29.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds