Wall clock time and date at job start Tue Mar 31 2020 13:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35893 * 116.99834 * 2 1 4 4 C 1.38814 * 120.02097 * 359.97438 * 3 2 1 5 5 C 1.38179 * 120.09193 * 180.02562 * 4 3 2 6 6 C 1.50696 * 119.93798 * 180.02562 * 5 4 3 7 7 C 1.38161 * 120.12702 * 359.74399 * 5 4 3 8 8 C 1.38926 * 120.03702 * 0.50703 * 7 5 4 9 9 N 1.39797 * 120.04913 * 179.76944 * 8 7 5 10 10 C 1.34781 * 119.99774 * 327.85553 * 9 8 7 11 11 O 1.21623 * 120.00047 * 4.28899 * 10 9 8 12 12 C 1.47383 * 120.00113 * 184.28910 * 10 9 8 13 13 C 1.39248 * 120.28219 * 5.25819 * 12 10 9 14 14 C 1.38205 * 120.09114 * 179.72949 * 13 12 10 15 15 C 1.38838 * 120.67671 * 0.29053 * 14 13 12 16 16 C 1.37591 * 120.57833 * 359.97438 * 15 14 13 17 17 C 1.40707 * 119.87951 * 359.97438 * 16 15 14 18 18 C 1.40876 * 120.32938 * 180.02562 * 17 16 15 19 19 H 1.07997 * 119.99696 * 213.35711 * 18 17 16 20 20 C 1.40276 * 120.00076 * 33.35295 * 18 17 16 21 21 N 1.30627 * 120.00078 * 9.15750 * 20 18 17 22 22 Si 1.86797 * 120.00134 * 189.16040 * 20 18 17 23 23 H 1.48501 * 109.47146 * 59.99787 * 22 20 18 24 24 H 1.48497 * 109.47162 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47097 * 299.99818 * 22 20 18 26 26 C 1.38576 * 120.01927 * 180.02562 * 3 2 1 27 27 C 1.50703 * 120.06188 * 359.95719 * 26 3 2 28 28 H 1.09000 * 109.46663 * 300.00067 * 1 2 3 29 29 H 1.08996 * 109.47013 * 59.99808 * 1 2 3 30 30 H 1.08999 * 109.46984 * 179.97438 * 1 2 3 31 31 H 1.08002 * 119.95464 * 0.03802 * 4 3 2 32 32 H 1.08997 * 109.47368 * 89.99936 * 6 5 4 33 33 H 1.09004 * 109.47305 * 209.99817 * 6 5 4 34 34 H 1.09001 * 109.46978 * 329.99693 * 6 5 4 35 35 H 1.08001 * 119.98208 * 180.28214 * 7 5 4 36 36 H 0.96999 * 120.00190 * 147.85386 * 9 8 7 37 37 H 1.08006 * 119.95570 * 0.02562 * 13 12 10 38 38 H 1.07995 * 119.66092 * 180.27963 * 14 13 12 39 39 H 1.08002 * 119.71459 * 179.97438 * 15 14 13 40 40 H 1.08001 * 120.05775 * 180.02562 * 16 15 14 41 41 H 0.96995 * 120.00196 * 180.02562 * 21 20 18 42 42 H 1.09003 * 109.47478 * 270.02742 * 27 26 3 43 43 H 1.09005 * 109.47180 * 30.02209 * 27 26 3 44 44 H 1.08997 * 109.47560 * 150.02162 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2903 2.3753 -0.0005 5 6 1.9161 3.6073 -0.0011 6 6 1.0924 4.8692 -0.0011 7 6 3.2956 3.6844 0.0043 8 6 4.0570 2.5224 -0.0005 9 7 5.4528 2.6002 0.0001 10 6 6.0708 3.6270 -0.6166 11 8 5.4143 4.5264 -1.1059 12 6 7.5420 3.6601 -0.6981 13 6 8.2951 2.5830 -0.2379 14 6 9.6742 2.6158 -0.3214 15 6 10.3254 3.7190 -0.8565 16 6 9.6089 4.8007 -1.3144 17 6 8.2037 4.7922 -1.2419 18 6 7.4607 5.8944 -1.7085 19 1 6.5359 6.1670 -1.2219 20 6 7.9220 6.6378 -2.8050 21 7 8.9385 6.2083 -3.5041 22 14 7.0829 8.2419 -3.2654 23 1 7.1700 9.1908 -2.1265 24 1 7.7550 8.8292 -4.4522 25 1 5.6563 7.9806 -3.5840 26 6 3.4298 1.2839 -0.0005 27 6 4.2524 0.0212 -0.0001 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2118 2.3183 -0.0003 32 1 0.8941 5.1737 1.0265 33 1 1.6389 5.6598 -0.5153 34 1 0.1484 4.6868 -0.5146 35 1 3.7822 4.6485 0.0084 36 1 5.9766 1.9152 0.4443 37 1 7.8005 1.7187 0.1804 38 1 10.2512 1.7747 0.0334 39 1 11.4039 3.7283 -0.9138 40 1 10.1241 5.6544 -1.7294 41 1 9.2577 6.7225 -4.2620 42 1 4.4508 -0.2830 1.0276 43 1 3.7050 -0.7693 -0.5137 44 1 5.1964 0.2023 -0.5141 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001586924795.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:04 Heat of formation + Delta-G solvation = -46.994842 kcal Electronic energy + Delta-G solvation = -27090.603733 eV Core-core repulsion = 23358.042980 eV Total energy + Delta-G solvation = -3732.560753 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.78795 -40.62065 -39.05685 -38.07502 -36.17855 -35.52093 -33.85559 -32.01211 -31.50528 -30.13311 -29.87813 -28.35791 -27.37015 -25.75637 -24.58834 -23.20417 -22.65774 -21.76330 -21.11273 -19.48569 -18.61283 -18.33572 -17.23199 -17.06227 -16.85966 -16.68507 -16.44189 -16.01743 -15.77930 -15.52742 -15.03233 -14.74423 -14.55557 -14.50407 -14.13570 -14.07978 -13.89936 -13.71720 -13.48205 -12.97568 -12.89866 -12.86796 -12.78650 -12.68636 -12.57370 -12.50320 -12.27200 -12.07927 -11.87461 -11.79258 -11.51882 -11.15939 -10.88480 -10.26844 -9.49287 -9.28170 -9.04880 -8.93013 -8.70323 -6.39816 0.17573 0.44901 0.60794 1.00558 1.32507 1.43752 1.50251 2.04838 2.18886 2.23529 2.60174 2.71966 2.82686 3.69236 3.78540 3.98061 4.08918 4.13366 4.30952 4.36248 4.39541 4.44795 4.45266 4.57630 4.61719 4.76041 4.78072 4.79262 4.81029 4.81267 4.86752 5.03432 5.08110 5.21859 5.26331 5.30221 5.31446 5.42976 5.45844 5.58802 5.68389 5.80218 5.95126 6.05435 6.08796 6.30988 6.46977 6.57137 6.71082 6.86773 6.94870 7.49222 8.26053 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013345 B = 0.003913 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.629560 B = 7153.145845 C = 8881.363344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.324 6.324 3 C 0.143 3.857 4 C -0.225 4.225 5 C -0.043 4.043 6 C -0.110 4.110 7 C -0.188 4.188 8 C 0.182 3.818 9 N -0.667 5.667 10 C 0.559 3.441 11 O -0.549 6.549 12 C -0.283 4.283 13 C -0.054 4.054 14 C -0.234 4.234 15 C -0.090 4.090 16 C -0.176 4.176 17 C 0.118 3.882 18 C -0.455 4.455 19 H 0.084 0.916 20 C 0.033 3.967 21 N -0.819 5.819 22 Si 0.977 3.023 23 H -0.256 1.256 24 H -0.259 1.259 25 H -0.273 1.273 26 C -0.172 4.172 27 C -0.097 4.097 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.121 0.879 31 H 0.156 0.844 32 H 0.086 0.914 33 H 0.054 0.946 34 H 0.088 0.912 35 H 0.115 0.885 36 H 0.416 0.584 37 H 0.131 0.869 38 H 0.134 0.866 39 H 0.121 0.879 40 H 0.103 0.897 41 H 0.290 0.710 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.888 -9.748 7.029 17.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.238 6.238 3 C 0.097 3.903 4 C -0.244 4.244 5 C -0.043 4.043 6 C -0.167 4.167 7 C -0.209 4.209 8 C 0.086 3.914 9 N -0.313 5.313 10 C 0.354 3.646 11 O -0.429 6.429 12 C -0.288 4.288 13 C -0.073 4.073 14 C -0.253 4.253 15 C -0.109 4.109 16 C -0.195 4.195 17 C 0.114 3.886 18 C -0.483 4.483 19 H 0.102 0.898 20 C -0.182 4.182 21 N -0.445 5.445 22 Si 0.799 3.201 23 H -0.180 1.180 24 H -0.183 1.183 25 H -0.199 1.199 26 C -0.175 4.175 27 C -0.154 4.154 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.140 0.860 31 H 0.173 0.827 32 H 0.105 0.895 33 H 0.074 0.926 34 H 0.107 0.893 35 H 0.133 0.867 36 H 0.255 0.745 37 H 0.148 0.852 38 H 0.152 0.848 39 H 0.139 0.861 40 H 0.121 0.879 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.095 0.905 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.033 -9.246 6.449 17.232 hybrid contribution 0.089 0.774 -0.373 0.864 sum -12.944 -8.472 6.076 16.620 Atomic orbital electron populations 1.23359 0.76456 1.05580 1.02241 1.86018 1.23324 1.25877 1.88544 1.18471 0.90900 0.84965 0.95992 1.21229 1.00940 0.90737 1.11510 1.19838 0.92600 0.96297 0.95614 1.20820 0.99251 0.93238 1.03352 1.21214 0.94171 0.98124 1.07372 1.17507 0.83041 0.93173 0.97686 1.43403 1.04378 1.27972 1.55535 1.18615 0.88613 0.80647 0.76678 1.90647 1.67264 1.37349 1.47624 1.19647 0.90470 0.98666 1.20000 1.21064 0.94467 0.95696 0.96030 1.20800 0.93971 1.00286 1.10257 1.21210 0.99338 0.93677 0.96644 1.21337 0.93700 0.99651 1.04825 1.17818 0.92490 0.90690 0.87607 1.20160 1.07044 1.09392 1.11734 0.89791 1.26795 0.94657 1.01463 0.95290 1.69726 1.22133 1.37839 1.14785 0.85323 0.78761 0.77173 0.78887 1.17989 1.18289 1.19860 1.19042 0.92062 0.94575 1.11860 1.20510 0.98485 0.93412 1.02993 0.91545 0.92068 0.86046 0.82665 0.89538 0.92643 0.89326 0.86682 0.74483 0.85161 0.84796 0.86063 0.87894 0.89872 0.89978 0.90536 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.32 -7.42 9.54 -92.35 -0.88 -8.30 16 3 C 0.14 3.95 6.66 22.49 0.15 4.10 16 4 C -0.22 -5.80 8.69 22.39 0.19 -5.61 16 5 C -0.04 -1.30 5.87 -19.90 -0.12 -1.41 16 6 C -0.11 -2.62 10.01 71.23 0.71 -1.91 16 7 C -0.19 -7.19 8.37 22.42 0.19 -7.00 16 8 C 0.18 6.67 6.33 38.18 0.24 6.91 16 9 N -0.67 -25.21 4.75 -306.52 -1.46 -26.66 16 10 C 0.56 26.68 7.57 86.65 0.66 27.34 16 11 O -0.55 -29.97 10.83 -4.10 -0.04 -30.02 16 12 C -0.28 -13.84 5.92 -19.70 -0.12 -13.96 16 13 C -0.05 -2.16 9.51 22.50 0.21 -1.95 16 14 C -0.23 -9.04 10.03 22.41 0.22 -8.82 16 15 C -0.09 -3.86 10.01 22.26 0.22 -3.64 16 16 C -0.18 -9.00 8.62 22.72 0.20 -8.81 16 17 C 0.12 6.47 5.52 -21.11 -0.12 6.35 16 18 C -0.45 -26.06 7.71 23.41 0.18 -25.88 16 19 H 0.08 5.03 5.88 -2.91 -0.02 5.01 16 20 C 0.03 1.77 5.26 85.37 0.45 2.22 16 21 N -0.82 -43.64 11.08 21.88 0.24 -43.39 16 22 Si 0.98 41.54 29.57 68.60 2.03 43.57 16 23 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 24 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 25 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 26 C -0.17 -5.31 5.91 -19.64 -0.12 -5.43 16 27 C -0.10 -2.43 9.24 71.24 0.66 -1.77 16 28 H 0.07 0.74 7.66 -2.39 -0.02 0.73 16 29 H 0.06 0.75 7.66 -2.39 -0.02 0.73 16 30 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.16 2.87 6.29 -2.91 -0.02 2.85 16 32 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.05 1.50 8.09 -2.38 -0.02 1.48 16 34 H 0.09 1.63 8.08 -2.39 -0.02 1.61 16 35 H 0.12 5.13 6.00 -2.91 -0.02 5.11 16 36 H 0.42 12.90 5.81 -92.71 -0.54 12.36 16 37 H 0.13 4.04 6.46 -2.91 -0.02 4.02 16 38 H 0.13 4.10 8.06 -2.91 -0.02 4.08 16 39 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 40 H 0.10 5.50 6.53 -2.91 -0.02 5.48 16 41 H 0.29 13.99 8.29 -92.71 -0.77 13.22 16 42 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.08 1.79 7.53 -2.38 -0.02 1.78 16 44 H 0.06 1.52 7.12 -2.39 -0.02 1.51 16 Total: -1.00 -69.65 360.05 5.33 -64.32 By element: Atomic # 1 Polarization: 37.88 SS G_CDS: 0.51 Total: 38.39 kcal Atomic # 6 Polarization: -42.84 SS G_CDS: 4.93 Total: -37.90 kcal Atomic # 7 Polarization: -68.84 SS G_CDS: -1.21 Total: -70.06 kcal Atomic # 8 Polarization: -37.39 SS G_CDS: -0.93 Total: -38.32 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -69.65 5.33 -64.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001586924795.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.325 kcal (2) G-P(sol) polarization free energy of solvation -69.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds