Wall clock time and date at job start Tue Mar 31 2020 14:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47060 * 2 1 4 4 C 1.53006 * 109.47255 * 65.00774 * 3 2 1 5 5 C 1.52994 * 109.47373 * 186.51714 * 4 3 2 6 6 C 1.53002 * 109.47163 * 185.00444 * 3 2 1 7 7 N 1.46901 * 109.47427 * 64.27884 * 6 3 2 8 8 C 1.46905 * 110.99654 * 72.59573 * 7 6 3 9 9 C 1.50693 * 109.46804 * 203.36128 * 8 7 6 10 10 H 1.07998 * 120.00596 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99686 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00162 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99929 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47107 * 90.00234 * 13 11 9 15 15 H 1.48501 * 109.47088 * 210.00342 * 13 11 9 16 16 H 1.48502 * 109.47327 * 329.99995 * 13 11 9 17 17 C 1.46891 * 111.00084 * 196.55204 * 7 6 3 18 18 C 1.50707 * 109.47024 * 169.99929 * 17 7 6 19 19 C 1.33852 * 122.44556 * 269.98036 * 18 17 7 20 20 S 1.70616 * 110.96237 * 180.02562 * 19 18 17 21 21 C 1.75827 * 91.56360 * 359.97438 * 20 19 18 22 22 C 1.46395 * 125.46470 * 179.97438 * 21 20 19 23 23 O 1.21620 * 120.00131 * 180.02562 * 22 21 20 24 24 O 1.34899 * 119.99664 * 0.04029 * 22 21 20 25 25 C 1.36748 * 109.07753 * 0.02562 * 21 20 19 26 26 H 1.08998 * 109.47458 * 59.99539 * 1 2 3 27 27 H 1.09002 * 109.47628 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47153 * 299.99444 * 1 2 3 29 29 H 1.09003 * 109.46636 * 240.00527 * 2 1 3 30 30 H 1.08998 * 109.47458 * 120.00461 * 2 1 3 31 31 H 1.09000 * 109.47916 * 305.00354 * 3 2 1 32 32 H 1.09003 * 109.46665 * 306.51558 * 4 3 2 33 33 H 1.08998 * 109.47067 * 66.51045 * 4 3 2 34 34 H 1.08996 * 109.47299 * 183.32800 * 5 4 3 35 35 H 1.09001 * 109.46775 * 303.32213 * 5 4 3 36 36 H 1.08995 * 109.47636 * 63.32401 * 5 4 3 37 37 H 1.09004 * 109.46765 * 304.27977 * 6 3 2 38 38 H 1.09004 * 109.47093 * 184.28331 * 6 3 2 39 39 H 1.09000 * 109.47405 * 323.35990 * 8 7 6 40 40 H 1.08996 * 109.46707 * 83.35996 * 8 7 6 41 41 H 0.97000 * 119.99923 * 180.02562 * 12 11 9 42 42 H 1.08997 * 109.47292 * 50.00275 * 17 7 6 43 43 H 1.09001 * 109.47502 * 289.99854 * 17 7 6 44 44 H 1.08006 * 124.51949 * 0.02562 * 19 18 17 45 45 H 0.96696 * 117.00186 * 179.97438 * 24 22 21 46 46 H 1.07997 * 123.36371 * 179.73488 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 1.6353 2.1265 1.3075 5 6 2.0012 3.6105 1.2411 6 6 3.5648 1.4443 -0.1258 7 7 3.9495 0.8804 -1.4266 8 6 3.6464 1.8171 -2.5168 9 6 3.4993 1.0543 -3.8081 10 1 3.6194 -0.0189 -3.8181 11 6 3.2124 1.7267 -4.9771 12 7 3.0677 3.0339 -4.9654 13 14 3.0308 0.7813 -6.5779 14 1 1.6133 0.3758 -6.7552 15 1 3.4442 1.6453 -7.7128 16 1 3.8906 -0.4289 -6.5385 17 6 5.3687 0.5017 -1.4371 18 6 5.6680 -0.2904 -2.6839 19 6 5.5600 -1.6237 -2.7308 20 16 5.9682 -2.2150 -4.2783 21 6 6.2918 -0.5901 -4.8668 22 6 6.7280 -0.2486 -6.2219 23 8 6.9242 0.9133 -6.5229 24 8 6.9121 -1.2228 -7.1367 25 6 6.0719 0.3036 -3.8554 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 1.8932 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6053 1.9816 -0.8417 32 1 0.5601 2.0235 1.4537 33 1 2.1615 1.6593 2.1399 34 1 1.7673 4.0854 2.1939 35 1 3.0668 3.7132 1.0361 36 1 1.4304 4.0904 0.4462 37 1 3.9960 0.8414 0.6734 38 1 3.9344 2.4669 -0.0495 39 1 2.7167 2.3420 -2.2970 40 1 4.4575 2.5390 -2.6116 41 1 2.8655 3.5068 -5.7878 42 1 5.5893 -0.1056 -0.5593 43 1 5.9849 1.4007 -1.4212 44 1 5.2552 -2.2427 -1.8999 45 1 7.2002 -0.9486 -8.0181 46 1 6.2062 1.3696 -3.9651 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595111296.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:11 Heat of formation + Delta-G solvation = -69.772476 kcal Electronic energy + Delta-G solvation = -26794.471257 eV Core-core repulsion = 23196.366743 eV Total energy + Delta-G solvation = -3598.104514 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.60168 -38.58408 -37.20264 -35.57047 -34.59021 -32.60108 -31.41384 -29.97370 -28.13530 -27.24727 -25.39854 -24.41310 -23.21741 -22.25871 -21.54794 -20.12691 -19.01839 -18.54311 -17.86424 -16.95172 -16.57186 -15.53984 -15.20829 -14.99612 -14.66046 -14.46658 -14.21806 -13.93353 -13.68835 -13.49566 -12.98675 -12.82099 -12.50415 -12.36748 -12.24866 -12.05824 -11.82179 -11.64453 -11.48182 -11.25739 -11.17588 -11.01790 -10.98840 -10.78731 -10.60023 -10.57270 -10.41234 -10.16462 -10.05800 -9.96355 -9.82075 -9.65718 -9.26330 -8.47433 -8.22002 -7.69325 -7.29337 -6.09705 -3.99609 1.06972 2.14932 2.55097 2.84231 3.30676 3.39675 3.41484 3.45486 3.66579 4.41546 4.92206 5.16249 5.22531 5.31113 5.43157 5.48708 5.56297 5.66536 5.69794 5.78529 5.82048 5.84132 5.91054 6.02731 6.03595 6.11917 6.15028 6.17575 6.23769 6.30265 6.36893 6.47220 6.55097 6.59227 6.65019 6.80504 6.91002 6.94128 6.96540 7.07514 7.17004 7.29484 7.79039 8.07368 8.11972 8.33018 8.47500 9.00790 9.54832 10.99039 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014048 B = 0.004698 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.748231 B = 5958.538525 C = 6686.522104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.108 4.108 3 C -0.081 4.081 4 C -0.119 4.119 5 C -0.154 4.154 6 C 0.062 3.938 7 N -0.530 5.530 8 C 0.187 3.813 9 C -0.477 4.477 10 H 0.070 0.930 11 C 0.064 3.936 12 N -0.884 5.884 13 Si 0.877 3.123 14 H -0.282 1.282 15 H -0.287 1.287 16 H -0.264 1.264 17 C 0.123 3.877 18 C -0.078 4.078 19 C -0.216 4.216 20 S 0.164 5.836 21 C -0.291 4.291 22 C 0.558 3.442 23 O -0.512 6.512 24 O -0.521 6.521 25 C 0.043 3.957 26 H 0.053 0.947 27 H 0.045 0.955 28 H 0.046 0.954 29 H 0.082 0.918 30 H 0.046 0.954 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.045 0.955 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.027 0.973 39 H 0.033 0.967 40 H -0.006 1.006 41 H 0.262 0.738 42 H 0.066 0.934 43 H 0.033 0.967 44 H 0.161 0.839 45 H 0.407 0.593 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.049 -7.250 8.056 11.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.145 4.145 3 C -0.100 4.100 4 C -0.157 4.157 5 C -0.211 4.211 6 C -0.066 4.066 7 N -0.254 5.254 8 C 0.062 3.938 9 C -0.515 4.515 10 H 0.088 0.912 11 C -0.139 4.139 12 N -0.522 5.522 13 Si 0.704 3.296 14 H -0.208 1.208 15 H -0.213 1.213 16 H -0.189 1.189 17 C -0.008 4.008 18 C -0.092 4.092 19 C -0.354 4.354 20 S 0.432 5.568 21 C -0.408 4.408 22 C 0.403 3.597 23 O -0.403 6.403 24 O -0.333 6.333 25 C 0.010 3.990 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.101 0.899 30 H 0.065 0.935 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.045 0.955 39 H 0.051 0.949 40 H 0.012 0.988 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.051 0.949 44 H 0.178 0.822 45 H 0.265 0.735 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.728 -8.796 7.523 11.892 hybrid contribution 0.148 2.073 -0.882 2.258 sum 2.876 -6.722 6.642 9.878 Atomic orbital electron populations 1.21832 0.97161 1.00644 1.01272 1.21402 0.94367 0.96507 1.02252 1.21180 0.95245 0.96398 0.97200 1.21608 1.00842 0.95386 0.97819 1.21831 1.01926 0.96496 1.00881 1.22089 0.95478 0.97096 0.91977 1.62157 1.15637 1.44550 1.03103 1.19866 0.96067 0.89824 0.88010 1.21319 1.44391 0.94563 0.91231 0.91187 1.24897 0.95458 0.94658 0.98904 1.69924 1.47386 1.06915 1.27972 0.86781 0.78394 0.80541 0.83833 1.20824 1.21310 1.18856 1.20591 0.90199 0.96691 0.93279 1.18375 1.01606 0.92646 0.96570 1.24936 1.08723 0.99240 1.02543 1.82685 1.64833 1.06698 1.02618 1.22776 1.24095 0.98214 0.95705 1.19451 0.73478 0.82565 0.84227 1.90925 1.49094 1.20285 1.79975 1.84604 1.81647 1.41604 1.25423 1.20504 0.88653 1.00198 0.89601 0.92752 0.93626 0.93470 0.89935 0.93522 0.90354 0.92057 0.92713 0.93569 0.92536 0.92703 0.92555 0.95481 0.94868 0.98849 0.92794 0.91548 0.94923 0.82184 0.73529 0.83323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.68 37.16 0.36 -1.69 16 2 C -0.11 -1.59 5.34 -26.74 -0.14 -1.73 16 3 C -0.08 -1.25 1.85 -90.62 -0.17 -1.42 16 4 C -0.12 -1.51 5.28 -26.73 -0.14 -1.66 16 5 C -0.15 -1.96 9.77 37.15 0.36 -1.60 16 6 C 0.06 1.00 4.22 -3.82 -0.02 0.98 16 7 N -0.53 -10.04 3.78 -237.52 -0.90 -10.94 16 8 C 0.19 4.41 4.41 -4.98 -0.02 4.39 16 9 C -0.48 -12.24 5.97 -34.44 -0.21 -12.45 16 10 H 0.07 1.82 6.09 -52.49 -0.32 1.50 16 11 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 12 N -0.88 -25.53 13.29 55.43 0.74 -24.80 16 13 Si 0.88 22.17 29.54 -169.99 -5.02 17.15 16 14 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 15 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 16 H -0.26 -6.53 6.93 56.52 0.39 -6.14 16 17 C 0.12 2.11 5.18 -4.98 -0.03 2.08 16 18 C -0.08 -1.42 3.44 -106.46 -0.37 -1.79 16 19 C -0.22 -3.52 10.53 29.19 0.31 -3.21 16 20 S 0.16 2.72 22.92 -107.50 -2.46 0.25 16 21 C -0.29 -5.79 6.45 -36.84 -0.24 -6.03 16 22 C 0.56 11.26 8.13 34.01 0.28 11.54 16 23 O -0.51 -11.76 17.63 -19.36 -0.34 -12.11 16 24 O -0.52 -8.38 13.29 -41.04 -0.55 -8.93 16 25 C 0.04 0.89 6.66 -40.42 -0.27 0.62 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.57 6.43 -51.93 -0.33 0.23 16 29 H 0.08 1.43 7.59 -51.93 -0.39 1.04 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 1.45 6.49 -51.93 -0.34 1.11 16 32 H 0.06 0.75 6.28 -51.93 -0.33 0.42 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.75 6.39 -51.93 -0.33 0.41 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.81 7.80 -51.93 -0.40 0.40 16 38 H 0.03 0.45 6.27 -51.93 -0.33 0.13 16 39 H 0.03 0.85 6.22 -51.93 -0.32 0.53 16 40 H -0.01 -0.16 7.80 -51.93 -0.41 -0.57 16 41 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 42 H 0.07 0.96 7.83 -51.93 -0.41 0.56 16 43 H 0.03 0.57 7.91 -51.93 -0.41 0.16 16 44 H 0.16 2.20 8.06 -52.48 -0.42 1.77 16 45 H 0.41 4.45 9.11 45.56 0.42 4.87 16 46 H 0.15 3.37 8.03 -52.49 -0.42 2.95 16 LS Contribution 379.41 15.07 5.72 5.72 Total: -1.00 -30.27 379.41 -9.63 -39.90 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -6.43 Total: 4.04 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: -0.39 Total: -10.29 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: -0.16 Total: -35.74 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.89 Total: -21.03 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Atomic # 16 Polarization: 2.72 SS G_CDS: -2.46 Total: 0.25 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.27 -9.63 -39.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595111296.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.874 kcal (2) G-P(sol) polarization free energy of solvation -30.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds