Wall clock time and date at job start Tue Mar 31 2020 14:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47060 * 2 1 4 4 C 1.53006 * 109.47255 * 65.00774 * 3 2 1 5 5 C 1.52994 * 109.47373 * 186.51714 * 4 3 2 6 6 C 1.53002 * 109.47163 * 185.00444 * 3 2 1 7 7 N 1.46901 * 109.47427 * 64.27884 * 6 3 2 8 8 C 1.46905 * 110.99654 * 72.59573 * 7 6 3 9 9 C 1.50693 * 109.46804 * 203.36128 * 8 7 6 10 10 H 1.07998 * 120.00596 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99686 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00162 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99929 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47107 * 90.00234 * 13 11 9 15 15 H 1.48501 * 109.47088 * 210.00342 * 13 11 9 16 16 H 1.48502 * 109.47327 * 329.99995 * 13 11 9 17 17 C 1.46891 * 111.00084 * 196.55204 * 7 6 3 18 18 C 1.50707 * 109.47024 * 169.99929 * 17 7 6 19 19 C 1.33852 * 122.44556 * 269.98036 * 18 17 7 20 20 S 1.70616 * 110.96237 * 180.02562 * 19 18 17 21 21 C 1.75827 * 91.56360 * 359.97438 * 20 19 18 22 22 C 1.46395 * 125.46470 * 179.97438 * 21 20 19 23 23 O 1.21620 * 120.00131 * 180.02562 * 22 21 20 24 24 O 1.34899 * 119.99664 * 0.04029 * 22 21 20 25 25 C 1.36748 * 109.07753 * 0.02562 * 21 20 19 26 26 H 1.08998 * 109.47458 * 59.99539 * 1 2 3 27 27 H 1.09002 * 109.47628 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47153 * 299.99444 * 1 2 3 29 29 H 1.09003 * 109.46636 * 240.00527 * 2 1 3 30 30 H 1.08998 * 109.47458 * 120.00461 * 2 1 3 31 31 H 1.09000 * 109.47916 * 305.00354 * 3 2 1 32 32 H 1.09003 * 109.46665 * 306.51558 * 4 3 2 33 33 H 1.08998 * 109.47067 * 66.51045 * 4 3 2 34 34 H 1.08996 * 109.47299 * 183.32800 * 5 4 3 35 35 H 1.09001 * 109.46775 * 303.32213 * 5 4 3 36 36 H 1.08995 * 109.47636 * 63.32401 * 5 4 3 37 37 H 1.09004 * 109.46765 * 304.27977 * 6 3 2 38 38 H 1.09004 * 109.47093 * 184.28331 * 6 3 2 39 39 H 1.09000 * 109.47405 * 323.35990 * 8 7 6 40 40 H 1.08996 * 109.46707 * 83.35996 * 8 7 6 41 41 H 0.97000 * 119.99923 * 180.02562 * 12 11 9 42 42 H 1.08997 * 109.47292 * 50.00275 * 17 7 6 43 43 H 1.09001 * 109.47502 * 289.99854 * 17 7 6 44 44 H 1.08006 * 124.51949 * 0.02562 * 19 18 17 45 45 H 0.96696 * 117.00186 * 179.97438 * 24 22 21 46 46 H 1.07997 * 123.36371 * 179.73488 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 1.6353 2.1265 1.3075 5 6 2.0012 3.6105 1.2411 6 6 3.5648 1.4443 -0.1258 7 7 3.9495 0.8804 -1.4266 8 6 3.6464 1.8171 -2.5168 9 6 3.4993 1.0543 -3.8081 10 1 3.6194 -0.0189 -3.8181 11 6 3.2124 1.7267 -4.9771 12 7 3.0677 3.0339 -4.9654 13 14 3.0308 0.7813 -6.5779 14 1 1.6133 0.3758 -6.7552 15 1 3.4442 1.6453 -7.7128 16 1 3.8906 -0.4289 -6.5385 17 6 5.3687 0.5017 -1.4371 18 6 5.6680 -0.2904 -2.6839 19 6 5.5600 -1.6237 -2.7308 20 16 5.9682 -2.2150 -4.2783 21 6 6.2918 -0.5901 -4.8668 22 6 6.7280 -0.2486 -6.2219 23 8 6.9242 0.9133 -6.5229 24 8 6.9121 -1.2228 -7.1367 25 6 6.0719 0.3036 -3.8554 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 1.8932 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6053 1.9816 -0.8417 32 1 0.5601 2.0235 1.4537 33 1 2.1615 1.6593 2.1399 34 1 1.7673 4.0854 2.1939 35 1 3.0668 3.7132 1.0361 36 1 1.4304 4.0904 0.4462 37 1 3.9960 0.8414 0.6734 38 1 3.9344 2.4669 -0.0495 39 1 2.7167 2.3420 -2.2970 40 1 4.4575 2.5390 -2.6116 41 1 2.8655 3.5068 -5.7878 42 1 5.5893 -0.1056 -0.5593 43 1 5.9849 1.4007 -1.4212 44 1 5.2552 -2.2427 -1.8999 45 1 7.2002 -0.9486 -8.0181 46 1 6.2062 1.3696 -3.9651 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595111296.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:10 Heat of formation + Delta-G solvation = -88.038174 kcal Electronic energy + Delta-G solvation = -26795.263317 eV Core-core repulsion = 23196.366743 eV Total energy + Delta-G solvation = -3598.896574 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.14266 -40.03941 -38.50966 -37.06481 -36.06531 -34.56975 -32.48816 -31.46295 -29.72347 -28.79988 -26.79385 -25.92365 -24.86910 -23.38237 -23.01847 -21.61525 -20.31609 -20.02911 -19.31580 -18.55743 -18.43229 -17.08443 -16.76986 -16.48439 -16.40855 -15.83953 -15.58886 -15.25701 -15.07462 -14.74387 -14.38966 -14.18061 -14.13634 -13.83489 -13.81227 -13.54549 -13.34317 -13.02451 -12.94543 -12.70835 -12.64165 -12.55386 -12.43416 -12.32960 -12.18562 -11.96385 -11.84774 -11.72412 -11.59759 -11.33158 -11.14751 -11.12753 -10.93970 -10.54596 -9.69643 -9.12629 -8.87320 -8.17853 -6.13107 -0.41500 0.70080 1.11614 1.26393 1.30074 1.33787 1.37872 1.99211 2.17713 2.36335 3.20685 3.49899 3.97839 4.10272 4.16198 4.23815 4.32680 4.37781 4.45346 4.49797 4.59772 4.66324 4.71526 4.72622 4.77186 4.86316 4.99483 5.03916 5.04258 5.10377 5.16849 5.21549 5.30936 5.31651 5.39946 5.41684 5.43345 5.49318 5.56263 5.62155 5.73238 5.74035 5.79535 6.17405 6.46397 6.72191 6.91213 6.96407 7.47632 8.91656 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014048 B = 0.004698 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.748231 B = 5958.538525 C = 6686.522104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.102 4.102 3 C -0.079 4.079 4 C -0.111 4.111 5 C -0.154 4.154 6 C 0.061 3.939 7 N -0.528 5.528 8 C 0.210 3.790 9 C -0.463 4.463 10 H 0.071 0.929 11 C 0.017 3.983 12 N -0.928 5.928 13 Si 0.913 3.087 14 H -0.276 1.276 15 H -0.303 1.303 16 H -0.252 1.252 17 C 0.122 3.878 18 C -0.104 4.104 19 C -0.194 4.194 20 S 0.239 5.761 21 C -0.322 4.322 22 C 0.557 3.443 23 O -0.552 6.552 24 O -0.507 6.507 25 C 0.030 3.970 26 H 0.030 0.970 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.035 0.965 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.046 0.954 36 H 0.034 0.966 37 H 0.089 0.911 38 H 0.016 0.984 39 H 0.005 0.995 40 H -0.042 1.042 41 H 0.255 0.745 42 H 0.107 0.893 43 H 0.021 0.979 44 H 0.200 0.800 45 H 0.430 0.570 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.272 -11.084 10.387 15.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.139 4.139 3 C -0.098 4.098 4 C -0.148 4.148 5 C -0.211 4.211 6 C -0.066 4.066 7 N -0.252 5.252 8 C 0.083 3.917 9 C -0.501 4.501 10 H 0.089 0.911 11 C -0.181 4.181 12 N -0.570 5.570 13 Si 0.741 3.259 14 H -0.201 1.201 15 H -0.230 1.230 16 H -0.176 1.176 17 C -0.008 4.008 18 C -0.117 4.117 19 C -0.332 4.332 20 S 0.507 5.493 21 C -0.439 4.439 22 C 0.403 3.597 23 O -0.446 6.446 24 O -0.321 6.321 25 C -0.005 4.005 26 H 0.049 0.951 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.053 0.947 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.108 0.892 38 H 0.034 0.966 39 H 0.023 0.977 40 H -0.024 1.024 41 H 0.064 0.936 42 H 0.125 0.875 43 H 0.039 0.961 44 H 0.217 0.783 45 H 0.292 0.708 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.959 -12.688 9.845 16.330 hybrid contribution 0.246 3.059 -1.592 3.458 sum 3.205 -9.629 8.253 13.080 Atomic orbital electron populations 1.21802 0.96349 1.01437 1.01027 1.21326 0.95103 0.95521 1.01979 1.21128 0.94521 0.96942 0.97193 1.21557 1.01684 0.94868 0.96735 1.21826 1.00989 0.96935 1.01377 1.22210 0.96174 0.97046 0.91211 1.62100 1.17161 1.42836 1.03083 1.19413 0.93388 0.89558 0.89320 1.21421 1.42744 0.94313 0.91649 0.91113 1.25447 0.96334 0.95065 1.01237 1.70031 1.50918 1.08171 1.27862 0.86187 0.78622 0.79821 0.81285 1.20149 1.23003 1.17580 1.20708 0.88618 0.96865 0.94559 1.18390 1.03371 0.93682 0.96286 1.25440 1.05402 0.98693 1.03689 1.82437 1.62234 1.03058 1.01524 1.23143 1.24200 1.00801 0.95719 1.19644 0.72664 0.82434 0.84941 1.90912 1.50807 1.22039 1.80806 1.84537 1.80989 1.40049 1.26496 1.20385 0.90018 0.98778 0.91278 0.95079 0.92290 0.91666 0.92719 0.91016 0.94694 0.91121 0.90398 0.91270 0.93467 0.94668 0.89226 0.96557 0.97661 1.02390 0.93557 0.87470 0.96067 0.78346 0.70829 0.87159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 9.68 71.98 0.70 -3.05 16 2 C -0.10 -2.79 5.34 30.59 0.16 -2.63 16 3 C -0.08 -2.37 1.85 -10.79 -0.02 -2.39 16 4 C -0.11 -2.59 5.28 30.59 0.16 -2.43 16 5 C -0.15 -3.81 9.77 71.98 0.70 -3.11 16 6 C 0.06 1.91 4.22 86.30 0.36 2.27 16 7 N -0.53 -19.83 3.78 -905.37 -3.42 -23.25 16 8 C 0.21 10.39 4.41 85.55 0.38 10.77 16 9 C -0.46 -24.53 5.97 25.60 0.15 -24.38 16 10 H 0.07 3.67 6.09 -2.91 -0.02 3.65 16 11 C 0.02 1.00 5.46 84.66 0.46 1.46 16 12 N -0.93 -57.11 13.29 21.45 0.28 -56.83 16 13 Si 0.91 46.52 29.54 68.60 2.03 48.54 16 14 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 15 H -0.30 -16.11 7.11 99.48 0.71 -15.40 16 16 H -0.25 -12.10 6.93 99.48 0.69 -11.41 16 17 C 0.12 4.02 5.18 85.56 0.44 4.46 16 18 C -0.10 -3.64 3.44 -21.05 -0.07 -3.71 16 19 C -0.19 -5.51 10.53 66.82 0.70 -4.81 16 20 S 0.24 7.02 22.92 -56.49 -1.29 5.72 16 21 C -0.32 -12.51 6.45 24.05 0.16 -12.35 16 22 C 0.56 22.24 8.13 69.95 0.57 22.81 16 23 O -0.55 -26.07 17.63 19.44 0.34 -25.72 16 24 O -0.51 -15.24 13.29 -58.14 -0.77 -16.01 16 25 C 0.03 1.24 6.66 21.73 0.14 1.38 16 26 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.06 1.31 8.14 -2.39 -0.02 1.30 16 28 H 0.06 1.40 6.43 -2.38 -0.02 1.38 16 29 H 0.05 1.81 7.59 -2.39 -0.02 1.79 16 30 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.03 1.36 6.49 -2.39 -0.02 1.34 16 32 H 0.07 1.54 6.28 -2.39 -0.01 1.52 16 33 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.05 1.24 6.39 -2.39 -0.02 1.22 16 36 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.09 2.22 7.80 -2.38 -0.02 2.21 16 38 H 0.02 0.55 6.27 -2.38 -0.01 0.53 16 39 H 0.01 0.29 6.22 -2.39 -0.01 0.28 16 40 H -0.04 -2.33 7.80 -2.39 -0.02 -2.34 16 41 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 42 H 0.11 2.66 7.83 -2.39 -0.02 2.64 16 43 H 0.02 0.75 7.91 -2.39 -0.02 0.73 16 44 H 0.20 4.16 8.06 -2.91 -0.02 4.13 16 45 H 0.43 8.50 9.11 -74.06 -0.67 7.83 16 46 H 0.11 5.40 8.03 -2.91 -0.02 5.37 16 Total: -1.00 -70.95 379.41 2.46 -68.48 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: 0.29 Total: 14.77 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: 5.00 Total: -15.71 kcal Atomic # 7 Polarization: -76.95 SS G_CDS: -3.14 Total: -80.08 kcal Atomic # 8 Polarization: -41.30 SS G_CDS: -0.43 Total: -41.73 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.54 kcal Atomic # 16 Polarization: 7.02 SS G_CDS: -1.29 Total: 5.72 kcal Total: -70.95 2.46 -68.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595111296.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.554 kcal (2) G-P(sol) polarization free energy of solvation -70.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds