Wall clock time and date at job start Tue Mar 31 2020 14:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46876 * 2 1 4 4 C 1.53005 * 109.46797 * 172.67643 * 3 2 1 5 5 C 1.53001 * 109.46796 * 184.99838 * 4 3 2 6 6 C 1.52998 * 109.47097 * 292.67272 * 3 2 1 7 7 N 1.46900 * 109.47171 * 66.97240 * 6 3 2 8 8 C 1.46896 * 110.99978 * 86.87201 * 7 6 3 9 9 C 1.50702 * 109.47354 * 285.29987 * 8 7 6 10 10 H 1.08001 * 119.99993 * 358.60408 * 9 8 7 11 11 C 1.37878 * 120.00264 * 178.60180 * 9 8 7 12 12 N 1.31517 * 119.99700 * 0.02562 * 11 9 8 13 13 Si 1.86792 * 120.00393 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47285 * 59.99991 * 13 11 9 15 15 H 1.48492 * 109.47561 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.47051 * 300.00359 * 13 11 9 17 17 C 1.46896 * 111.00198 * 210.83078 * 7 6 3 18 18 C 1.50697 * 109.47382 * 66.04332 * 17 7 6 19 19 C 1.32742 * 124.70110 * 90.00125 * 18 17 7 20 20 C 1.44466 * 113.08825 * 179.97438 * 19 18 17 21 21 C 1.47037 * 123.47395 * 180.02562 * 20 19 18 22 22 O 1.21560 * 119.99520 * 359.97438 * 21 20 19 23 23 O 1.34790 * 120.00187 * 179.97438 * 21 20 19 24 24 C 1.36101 * 113.04818 * 359.97438 * 20 19 18 25 25 S 1.70445 * 110.80912 * 359.76176 * 24 20 19 26 26 H 1.08993 * 109.47112 * 178.69172 * 1 2 3 27 27 H 1.09007 * 109.47336 * 298.69490 * 1 2 3 28 28 H 1.09001 * 109.46937 * 58.69502 * 1 2 3 29 29 H 1.08999 * 109.47493 * 240.00283 * 2 1 3 30 30 H 1.09002 * 109.47053 * 119.99516 * 2 1 3 31 31 H 1.08997 * 109.47470 * 52.67368 * 3 2 1 32 32 H 1.08993 * 109.47164 * 304.99379 * 4 3 2 33 33 H 1.08998 * 109.47058 * 65.00089 * 4 3 2 34 34 H 1.09004 * 109.47114 * 179.97438 * 5 4 3 35 35 H 1.09001 * 109.47425 * 300.00047 * 5 4 3 36 36 H 1.09004 * 109.47141 * 59.99845 * 5 4 3 37 37 H 1.08998 * 109.47407 * 306.97098 * 6 3 2 38 38 H 1.09001 * 109.47347 * 186.97116 * 6 3 2 39 39 H 1.08997 * 109.47255 * 45.30493 * 8 7 6 40 40 H 1.09004 * 109.47258 * 165.30291 * 8 7 6 41 41 H 0.97002 * 119.99918 * 180.02562 * 12 11 9 42 42 H 1.09003 * 109.47284 * 186.04498 * 17 7 6 43 43 H 1.08997 * 109.46868 * 306.04021 * 17 7 6 44 44 H 1.08004 * 123.45163 * 359.97438 * 19 18 17 45 45 H 0.96697 * 117.00256 * 179.97438 * 23 21 20 46 46 H 1.08008 * 124.59442 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5589 1.4465 0.1839 5 6 4.0537 2.8889 0.3088 6 6 1.6857 2.1087 -1.3310 7 7 0.2275 2.2555 -1.4323 8 6 -0.2202 3.5072 -0.8073 9 6 -0.1673 3.3670 0.6922 10 1 0.1442 2.4332 1.1366 11 6 -0.5164 4.4308 1.4969 12 7 -0.8960 5.5677 0.9558 13 14 -0.4501 4.2572 3.3556 14 1 0.9373 3.9317 3.7732 15 1 -0.8711 5.5334 3.9873 16 1 -1.3643 3.1681 3.7840 17 6 -0.2134 2.1785 -2.8314 18 6 0.0453 0.7928 -3.3641 19 6 -0.8174 -0.2142 -3.3014 20 6 -0.3103 -1.4321 -3.8901 21 6 -1.0758 -2.6863 -3.9450 22 8 -2.1974 -2.7345 -3.4789 23 8 -0.5338 -3.7824 -4.5120 24 6 0.9487 -1.2985 -4.3896 25 16 1.5255 0.2890 -4.1610 26 1 -0.3633 -1.0273 -0.0235 27 1 -0.3634 0.4935 0.9015 28 1 -0.3633 0.5340 -0.8781 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.5736 1.9928 0.8172 32 1 3.8169 0.8944 1.0875 33 1 4.0304 0.9739 -0.6778 34 1 5.1358 2.8917 0.4402 35 1 3.7957 3.4411 -0.5949 36 1 3.5821 3.3614 1.1704 37 1 2.0467 1.4915 -2.1537 38 1 2.1541 3.0916 -1.3815 39 1 0.4322 4.3228 -1.1192 40 1 -1.2433 3.7219 -1.1162 41 1 -1.1413 6.3163 1.5219 42 1 -1.2798 2.3966 -2.8888 43 1 0.3387 2.9057 -3.4268 44 1 -1.7978 -0.1314 -2.8559 45 1 -1.0751 -4.5836 -4.5242 46 1 1.5050 -2.0899 -4.8699 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595111552.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:04 Heat of formation + Delta-G solvation = -62.124791 kcal Electronic energy + Delta-G solvation = -26803.697070 eV Core-core repulsion = 23205.924185 eV Total energy + Delta-G solvation = -3597.772885 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.20206 -38.49815 -36.98106 -36.04284 -34.75869 -32.69458 -31.33479 -30.67760 -27.50220 -26.97206 -25.52180 -24.97560 -23.71979 -21.57309 -21.24061 -20.49160 -19.68155 -18.97809 -18.08217 -17.20608 -16.50065 -16.19115 -15.71761 -15.47967 -14.80539 -14.38812 -14.24438 -13.88692 -13.56989 -13.31101 -13.12491 -12.80460 -12.65782 -12.54643 -12.31783 -12.03020 -11.87610 -11.69341 -11.62926 -11.52029 -11.15294 -11.05190 -10.94083 -10.81675 -10.66700 -10.56868 -10.44197 -10.41571 -10.14589 -9.86842 -9.69812 -9.45868 -8.84615 -8.76531 -8.42894 -8.32990 -7.11705 -6.02671 -4.02269 0.65002 1.48370 1.87875 1.92816 3.00644 3.11645 3.33093 3.37740 3.40908 4.41627 4.74326 4.89868 5.14835 5.21208 5.33088 5.40257 5.42093 5.48987 5.60585 5.69997 5.83789 5.88580 6.01626 6.06004 6.11725 6.17524 6.24176 6.27451 6.35397 6.35984 6.40919 6.47111 6.54509 6.67607 6.73560 6.78553 6.96249 7.04455 7.17886 7.23258 7.31196 7.72508 7.83528 7.89712 8.04146 8.13404 8.48599 9.05281 9.61108 11.07883 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014547 B = 0.004121 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.287144 B = 6792.391392 C = 7288.051586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.097 4.097 3 C -0.100 4.100 4 C -0.116 4.116 5 C -0.151 4.151 6 C 0.070 3.930 7 N -0.519 5.519 8 C 0.193 3.807 9 C -0.503 4.503 10 H 0.079 0.921 11 C 0.057 3.943 12 N -0.899 5.899 13 Si 0.889 3.111 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.276 1.276 17 C 0.116 3.884 18 C -0.170 4.170 19 C -0.076 4.076 20 C -0.147 4.147 21 C 0.546 3.454 22 O -0.512 6.512 23 O -0.517 6.517 24 C -0.195 4.195 25 S 0.196 5.804 26 H 0.015 0.985 27 H 0.050 0.950 28 H 0.114 0.886 29 H 0.038 0.962 30 H 0.037 0.963 31 H 0.113 0.887 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.041 0.959 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.047 0.953 38 H 0.038 0.962 39 H -0.004 1.004 40 H 0.028 0.972 41 H 0.260 0.740 42 H 0.093 0.907 43 H 0.037 0.963 44 H 0.156 0.844 45 H 0.412 0.588 46 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.678 -12.437 -11.308 18.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.135 4.135 3 C -0.118 4.118 4 C -0.154 4.154 5 C -0.208 4.208 6 C -0.059 4.059 7 N -0.243 5.243 8 C 0.068 3.932 9 C -0.542 4.542 10 H 0.097 0.903 11 C -0.144 4.144 12 N -0.539 5.539 13 Si 0.717 3.283 14 H -0.202 1.202 15 H -0.215 1.215 16 H -0.202 1.202 17 C -0.014 4.014 18 C -0.287 4.287 19 C -0.104 4.104 20 C -0.164 4.164 21 C 0.388 3.612 22 O -0.401 6.401 23 O -0.329 6.329 24 C -0.333 4.333 25 S 0.463 5.537 26 H 0.034 0.966 27 H 0.070 0.930 28 H 0.132 0.868 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.131 0.869 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.014 0.986 40 H 0.046 0.954 41 H 0.070 0.930 42 H 0.111 0.889 43 H 0.056 0.944 44 H 0.174 0.826 45 H 0.270 0.730 46 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 7.679 -11.514 -11.242 17.831 hybrid contribution -1.233 -0.821 1.006 1.790 sum 6.447 -12.336 -10.236 17.277 Atomic orbital electron populations 1.22296 0.94824 0.98773 1.06382 1.21321 0.97519 0.95734 0.98884 1.21604 0.93395 0.96579 1.00209 1.21540 0.96773 0.96612 1.00459 1.21794 0.99264 0.97146 1.02577 1.22186 0.88299 0.98611 0.96772 1.62359 1.11583 1.39830 1.10571 1.19854 0.95376 0.83146 0.94787 1.21343 1.43967 0.98531 0.90314 0.90291 1.24958 0.95611 0.95343 0.98524 1.69942 1.45854 1.02812 1.35285 0.86696 0.78557 0.77249 0.85795 1.20225 1.21498 1.20167 1.20672 1.01842 0.87892 0.90997 1.24438 0.96821 1.01408 1.06046 1.20895 1.01428 0.88884 0.99148 1.19262 0.94937 0.92767 1.09468 1.20229 0.84005 0.83086 0.73850 1.90919 1.19892 1.84883 1.44411 1.84568 1.51332 1.22258 1.74740 1.25828 0.99122 1.03839 1.04524 1.83139 1.17523 1.00549 1.52480 0.96594 0.93045 0.86819 0.94329 0.94429 0.86906 0.92773 0.93293 0.94033 0.92644 0.92243 0.93484 0.94380 0.98606 0.95435 0.92992 0.88877 0.94442 0.82622 0.73006 0.80947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.08 9.06 37.16 0.34 -2.74 16 2 C -0.10 -1.64 5.38 -26.73 -0.14 -1.79 16 3 C -0.10 -1.75 1.87 -90.62 -0.17 -1.92 16 4 C -0.12 -1.75 5.40 -26.73 -0.14 -1.90 16 5 C -0.15 -2.30 9.68 37.16 0.36 -1.94 16 6 C 0.07 1.22 4.11 -3.82 -0.02 1.20 16 7 N -0.52 -9.77 1.30 -237.52 -0.31 -10.08 16 8 C 0.19 4.53 4.73 -4.98 -0.02 4.50 16 9 C -0.50 -12.86 8.03 -34.44 -0.28 -13.14 16 10 H 0.08 1.98 3.69 -52.49 -0.19 1.79 16 11 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 12 N -0.90 -25.56 13.29 55.43 0.74 -24.82 16 13 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 14 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 15 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 C 0.12 1.85 5.26 -4.98 -0.03 1.82 16 18 C -0.17 -2.38 4.64 -36.19 -0.17 -2.55 16 19 C -0.08 -1.09 9.00 -39.01 -0.35 -1.44 16 20 C -0.15 -1.94 5.98 -104.65 -0.63 -2.57 16 21 C 0.55 7.17 8.30 34.30 0.28 7.45 16 22 O -0.51 -8.25 17.58 -19.31 -0.34 -8.59 16 23 O -0.52 -4.86 13.08 -40.74 -0.53 -5.40 16 24 C -0.19 -2.17 10.56 29.96 0.32 -1.85 16 25 S 0.20 2.24 20.97 -107.50 -2.25 -0.01 16 26 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.05 1.05 6.90 -51.92 -0.36 0.70 16 28 H 0.11 2.14 3.13 -51.93 -0.16 1.98 16 29 H 0.04 0.62 8.11 -51.93 -0.42 0.20 16 30 H 0.04 0.61 8.13 -51.93 -0.42 0.19 16 31 H 0.11 2.38 4.50 -51.93 -0.23 2.14 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.05 0.86 6.42 -51.93 -0.33 0.53 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.05 0.72 4.92 -51.88 -0.26 0.47 16 38 H 0.04 0.72 5.66 -51.93 -0.29 0.42 16 39 H 0.00 -0.10 7.66 -51.93 -0.40 -0.50 16 40 H 0.03 0.70 7.76 -51.93 -0.40 0.29 16 41 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.09 1.48 7.84 -51.93 -0.41 1.07 16 43 H 0.04 0.57 8.12 -51.93 -0.42 0.15 16 44 H 0.16 2.36 8.06 -52.48 -0.42 1.94 16 45 H 0.41 1.99 9.11 45.56 0.42 2.40 16 46 H 0.17 1.52 8.02 -52.48 -0.42 1.10 16 LS Contribution 371.57 15.07 5.60 5.60 Total: -1.00 -29.67 371.57 -8.85 -38.52 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -5.98 Total: 4.20 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: -0.75 Total: -15.43 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.43 Total: -34.90 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -0.87 Total: -13.99 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 2.24 SS G_CDS: -2.25 Total: -0.01 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.67 -8.85 -38.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595111552.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.605 kcal (2) G-P(sol) polarization free energy of solvation -29.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds