Wall clock time and date at job start Tue Mar 31 2020 14:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46876 * 2 1 4 4 C 1.53005 * 109.46797 * 172.67643 * 3 2 1 5 5 C 1.53001 * 109.46796 * 184.99838 * 4 3 2 6 6 C 1.52998 * 109.47097 * 292.67272 * 3 2 1 7 7 N 1.46900 * 109.47171 * 66.97240 * 6 3 2 8 8 C 1.46896 * 110.99978 * 86.87201 * 7 6 3 9 9 C 1.50702 * 109.47354 * 285.29987 * 8 7 6 10 10 H 1.08001 * 119.99993 * 358.60408 * 9 8 7 11 11 C 1.37878 * 120.00264 * 178.60180 * 9 8 7 12 12 N 1.31517 * 119.99700 * 0.02562 * 11 9 8 13 13 Si 1.86792 * 120.00393 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47285 * 59.99991 * 13 11 9 15 15 H 1.48492 * 109.47561 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.47051 * 300.00359 * 13 11 9 17 17 C 1.46896 * 111.00198 * 210.83078 * 7 6 3 18 18 C 1.50697 * 109.47382 * 66.04332 * 17 7 6 19 19 C 1.32742 * 124.70110 * 90.00125 * 18 17 7 20 20 C 1.44466 * 113.08825 * 179.97438 * 19 18 17 21 21 C 1.47037 * 123.47395 * 180.02562 * 20 19 18 22 22 O 1.21560 * 119.99520 * 359.97438 * 21 20 19 23 23 O 1.34790 * 120.00187 * 179.97438 * 21 20 19 24 24 C 1.36101 * 113.04818 * 359.97438 * 20 19 18 25 25 S 1.70445 * 110.80912 * 359.76176 * 24 20 19 26 26 H 1.08993 * 109.47112 * 178.69172 * 1 2 3 27 27 H 1.09007 * 109.47336 * 298.69490 * 1 2 3 28 28 H 1.09001 * 109.46937 * 58.69502 * 1 2 3 29 29 H 1.08999 * 109.47493 * 240.00283 * 2 1 3 30 30 H 1.09002 * 109.47053 * 119.99516 * 2 1 3 31 31 H 1.08997 * 109.47470 * 52.67368 * 3 2 1 32 32 H 1.08993 * 109.47164 * 304.99379 * 4 3 2 33 33 H 1.08998 * 109.47058 * 65.00089 * 4 3 2 34 34 H 1.09004 * 109.47114 * 179.97438 * 5 4 3 35 35 H 1.09001 * 109.47425 * 300.00047 * 5 4 3 36 36 H 1.09004 * 109.47141 * 59.99845 * 5 4 3 37 37 H 1.08998 * 109.47407 * 306.97098 * 6 3 2 38 38 H 1.09001 * 109.47347 * 186.97116 * 6 3 2 39 39 H 1.08997 * 109.47255 * 45.30493 * 8 7 6 40 40 H 1.09004 * 109.47258 * 165.30291 * 8 7 6 41 41 H 0.97002 * 119.99918 * 180.02562 * 12 11 9 42 42 H 1.09003 * 109.47284 * 186.04498 * 17 7 6 43 43 H 1.08997 * 109.46868 * 306.04021 * 17 7 6 44 44 H 1.08004 * 123.45163 * 359.97438 * 19 18 17 45 45 H 0.96697 * 117.00256 * 179.97438 * 23 21 20 46 46 H 1.08008 * 124.59442 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5589 1.4465 0.1839 5 6 4.0537 2.8889 0.3088 6 6 1.6857 2.1087 -1.3310 7 7 0.2275 2.2555 -1.4323 8 6 -0.2202 3.5072 -0.8073 9 6 -0.1673 3.3670 0.6922 10 1 0.1442 2.4332 1.1366 11 6 -0.5164 4.4308 1.4969 12 7 -0.8960 5.5677 0.9558 13 14 -0.4501 4.2572 3.3556 14 1 0.9373 3.9317 3.7732 15 1 -0.8711 5.5334 3.9873 16 1 -1.3643 3.1681 3.7840 17 6 -0.2134 2.1785 -2.8314 18 6 0.0453 0.7928 -3.3641 19 6 -0.8174 -0.2142 -3.3014 20 6 -0.3103 -1.4321 -3.8901 21 6 -1.0758 -2.6863 -3.9450 22 8 -2.1974 -2.7345 -3.4789 23 8 -0.5338 -3.7824 -4.5120 24 6 0.9487 -1.2985 -4.3896 25 16 1.5255 0.2890 -4.1610 26 1 -0.3633 -1.0273 -0.0235 27 1 -0.3634 0.4935 0.9015 28 1 -0.3633 0.5340 -0.8781 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.5736 1.9928 0.8172 32 1 3.8169 0.8944 1.0875 33 1 4.0304 0.9739 -0.6778 34 1 5.1358 2.8917 0.4402 35 1 3.7957 3.4411 -0.5949 36 1 3.5821 3.3614 1.1704 37 1 2.0467 1.4915 -2.1537 38 1 2.1541 3.0916 -1.3815 39 1 0.4322 4.3228 -1.1192 40 1 -1.2433 3.7219 -1.1162 41 1 -1.1413 6.3163 1.5219 42 1 -1.2798 2.3966 -2.8888 43 1 0.3387 2.9057 -3.4268 44 1 -1.7978 -0.1314 -2.8559 45 1 -1.0751 -4.5836 -4.5242 46 1 1.5050 -2.0899 -4.8699 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595111552.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:03 Heat of formation + Delta-G solvation = -77.638415 kcal Electronic energy + Delta-G solvation = -26804.369792 eV Core-core repulsion = 23205.924185 eV Total energy + Delta-G solvation = -3598.445607 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.16659 -39.90330 -38.06983 -36.97982 -36.17590 -34.64452 -32.68192 -31.97083 -29.24537 -28.37031 -26.58735 -26.25704 -25.35280 -22.97579 -22.56262 -21.84812 -20.95034 -20.19153 -19.03365 -18.49054 -17.88942 -17.43274 -17.06101 -16.61687 -16.53992 -15.82268 -15.78086 -14.98570 -14.74601 -14.65233 -14.46149 -14.21655 -13.88157 -13.84531 -13.71326 -13.42294 -13.22416 -13.13128 -12.92957 -12.84920 -12.61585 -12.55668 -12.51571 -12.28816 -12.16794 -12.06181 -11.97968 -11.59558 -11.48450 -11.35952 -11.18138 -11.01755 -10.60162 -10.41651 -9.85139 -9.36935 -8.69198 -8.10151 -6.14809 -0.30622 0.50589 0.80899 0.90181 1.41949 1.43359 1.49932 2.09591 2.18016 2.44554 3.22787 3.38640 3.73496 4.06558 4.11959 4.13373 4.26892 4.30518 4.40858 4.53084 4.57078 4.64205 4.72211 4.78018 4.80966 4.87519 4.93632 4.99636 5.10218 5.14986 5.21004 5.22216 5.28448 5.36322 5.37475 5.39936 5.44728 5.53935 5.59072 5.63433 5.71032 5.99003 6.18040 6.23945 6.43747 6.66356 7.01171 7.01862 7.52336 8.99800 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014547 B = 0.004121 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.287144 B = 6792.391392 C = 7288.051586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.090 4.090 3 C -0.099 4.099 4 C -0.111 4.111 5 C -0.149 4.149 6 C 0.072 3.928 7 N -0.520 5.520 8 C 0.209 3.791 9 C -0.500 4.500 10 H 0.084 0.916 11 C 0.005 3.995 12 N -0.936 5.936 13 Si 0.945 3.055 14 H -0.268 1.268 15 H -0.289 1.289 16 H -0.274 1.274 17 C 0.116 3.884 18 C -0.193 4.193 19 C -0.079 4.079 20 C -0.173 4.173 21 C 0.552 3.448 22 O -0.554 6.554 23 O -0.502 6.502 24 C -0.169 4.169 25 S 0.247 5.753 26 H 0.020 0.980 27 H 0.022 0.978 28 H 0.109 0.891 29 H 0.057 0.943 30 H 0.046 0.954 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.046 0.954 36 H 0.032 0.968 37 H 0.074 0.926 38 H 0.023 0.977 39 H -0.031 1.031 40 H 0.002 0.998 41 H 0.259 0.741 42 H 0.082 0.918 43 H 0.045 0.955 44 H 0.136 0.864 45 H 0.433 0.567 46 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.287 -15.001 -12.394 21.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.127 4.127 3 C -0.118 4.118 4 C -0.148 4.148 5 C -0.206 4.206 6 C -0.056 4.056 7 N -0.243 5.243 8 C 0.084 3.916 9 C -0.538 4.538 10 H 0.102 0.898 11 C -0.192 4.192 12 N -0.578 5.578 13 Si 0.771 3.229 14 H -0.193 1.193 15 H -0.215 1.215 16 H -0.200 1.200 17 C -0.013 4.013 18 C -0.310 4.310 19 C -0.108 4.108 20 C -0.189 4.189 21 C 0.396 3.604 22 O -0.446 6.446 23 O -0.316 6.316 24 C -0.308 4.308 25 S 0.515 5.485 26 H 0.040 0.960 27 H 0.041 0.959 28 H 0.127 0.873 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.051 0.949 37 H 0.092 0.908 38 H 0.041 0.959 39 H -0.013 1.013 40 H 0.020 0.980 41 H 0.068 0.932 42 H 0.100 0.900 43 H 0.063 0.937 44 H 0.154 0.846 45 H 0.294 0.706 46 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 10.307 -14.124 -12.344 21.403 hybrid contribution -2.001 -0.116 1.215 2.344 sum 8.306 -14.240 -11.130 19.890 Atomic orbital electron populations 1.22235 0.96450 0.98596 1.04673 1.21260 0.95916 0.95388 1.00168 1.21512 0.95250 0.96464 0.98584 1.21505 0.94646 0.96665 1.02026 1.21769 1.00747 0.97092 1.00996 1.22213 0.87065 0.98355 0.97937 1.62254 1.12761 1.36734 1.12587 1.19471 0.93383 0.84468 0.94326 1.21721 1.42222 0.98408 0.91498 0.89814 1.25696 0.95790 0.95246 1.02500 1.70068 1.47623 1.03562 1.36548 0.85797 0.78824 0.76997 0.81250 1.19293 1.21515 1.19971 1.20598 1.01416 0.89864 0.89460 1.24160 0.99108 1.00101 1.07657 1.20846 1.00833 0.89958 0.99115 1.19203 0.96054 0.92540 1.11149 1.20210 0.83280 0.83766 0.73132 1.90909 1.21638 1.85617 1.46480 1.84504 1.51228 1.22359 1.73528 1.26196 0.98074 1.04351 1.02132 1.82957 1.14664 1.00030 1.50900 0.96048 0.95873 0.87289 0.92477 0.93495 0.90745 0.91799 0.90802 0.91422 0.93451 0.94860 0.90810 0.95913 1.01312 0.98034 0.93249 0.89950 0.93655 0.84650 0.70558 0.77752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.98 9.06 71.98 0.65 -5.33 16 2 C -0.09 -2.85 5.38 30.60 0.16 -2.69 16 3 C -0.10 -3.39 1.87 -10.79 -0.02 -3.41 16 4 C -0.11 -3.06 5.40 30.60 0.17 -2.90 16 5 C -0.15 -4.33 9.68 71.98 0.70 -3.64 16 6 C 0.07 2.48 4.11 86.30 0.35 2.83 16 7 N -0.52 -20.00 1.30 -905.39 -1.18 -21.18 16 8 C 0.21 10.33 4.73 85.56 0.40 10.74 16 9 C -0.50 -26.52 8.03 25.60 0.21 -26.32 16 10 H 0.08 4.34 3.69 -2.91 -0.01 4.33 16 11 C 0.00 0.27 5.46 84.65 0.46 0.74 16 12 N -0.94 -55.28 13.29 21.45 0.28 -55.00 16 13 Si 0.94 44.18 29.54 68.60 2.03 46.21 16 14 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 15 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 16 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 17 C 0.12 3.76 5.26 85.56 0.45 4.21 16 18 C -0.19 -5.21 4.64 24.51 0.11 -5.10 16 19 C -0.08 -2.24 9.00 22.68 0.20 -2.04 16 20 C -0.17 -4.19 5.98 -19.88 -0.12 -4.31 16 21 C 0.55 13.50 8.30 70.13 0.58 14.08 16 22 O -0.55 -17.69 17.58 19.64 0.35 -17.35 16 23 O -0.50 -7.82 13.08 -57.02 -0.75 -8.56 16 24 C -0.17 -3.07 10.56 67.32 0.71 -2.36 16 25 S 0.25 4.78 20.97 -56.49 -1.18 3.60 16 26 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.02 0.94 6.90 -2.38 -0.02 0.93 16 28 H 0.11 4.13 3.13 -2.39 -0.01 4.12 16 29 H 0.06 1.61 8.11 -2.39 -0.02 1.59 16 30 H 0.05 1.41 8.13 -2.39 -0.02 1.39 16 31 H 0.07 3.16 4.50 -2.39 -0.01 3.15 16 32 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.05 1.43 6.42 -2.39 -0.02 1.42 16 36 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.07 2.10 4.92 -2.42 -0.01 2.09 16 38 H 0.02 0.86 5.66 -2.39 -0.01 0.84 16 39 H -0.03 -1.66 7.66 -2.39 -0.02 -1.68 16 40 H 0.00 0.08 7.76 -2.38 -0.02 0.07 16 41 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 42 H 0.08 2.78 7.84 -2.39 -0.02 2.77 16 43 H 0.05 1.39 8.12 -2.39 -0.02 1.37 16 44 H 0.14 4.31 8.06 -2.91 -0.02 4.28 16 45 H 0.43 2.85 9.11 -74.06 -0.67 2.18 16 46 H 0.21 2.41 8.02 -2.91 -0.02 2.38 16 Total: -1.00 -66.86 371.57 4.91 -61.95 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: 0.33 Total: 15.82 kcal Atomic # 6 Polarization: -30.51 SS G_CDS: 5.03 Total: -25.49 kcal Atomic # 7 Polarization: -75.28 SS G_CDS: -0.89 Total: -76.17 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.40 Total: -25.91 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: 4.78 SS G_CDS: -1.18 Total: 3.60 kcal Total: -66.86 4.91 -61.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595111552.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.689 kcal (2) G-P(sol) polarization free energy of solvation -66.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds