Wall clock time and date at job start Tue Mar 31 2020 14:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50699 * 109.46866 * 299.99792 * 3 2 1 5 5 C 1.38248 * 119.97666 * 269.72789 * 4 3 2 6 6 C 1.38199 * 120.02749 * 179.72788 * 5 4 3 7 7 C 1.38452 * 119.96984 * 0.56469 * 6 5 4 8 8 F 1.35107 * 120.02307 * 179.68304 * 7 6 5 9 9 C 1.38457 * 119.95418 * 359.71060 * 7 6 5 10 10 C 1.38194 * 119.96980 * 359.97438 * 9 7 6 11 11 N 1.46902 * 109.47094 * 119.99378 * 2 1 3 12 12 C 1.46905 * 110.99800 * 60.00278 * 11 2 1 13 13 C 1.53000 * 109.47234 * 179.97438 * 12 11 2 14 14 O 1.42896 * 109.47186 * 64.99938 * 13 12 11 15 15 C 1.42899 * 113.99987 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.46807 * 180.02562 * 15 14 13 17 17 H 1.08006 * 120.00396 * 359.97438 * 16 15 14 18 18 C 1.37885 * 120.00087 * 180.02562 * 16 15 14 19 19 N 1.31518 * 119.99286 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00226 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47484 * 59.99424 * 20 18 16 22 22 H 1.48497 * 109.47051 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47053 * 299.99355 * 20 18 16 24 24 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 25 25 O 1.20831 * 119.99975 * 25.00060 * 24 2 1 26 26 O 1.34225 * 120.00372 * 205.00006 * 24 2 1 27 27 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46952 * 300.00302 * 1 2 3 30 30 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 31 31 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 32 32 H 1.08008 * 119.98209 * 359.97438 * 5 4 3 33 33 H 1.07998 * 120.01020 * 180.25607 * 6 5 4 34 34 H 1.08000 * 120.01110 * 179.97438 * 9 7 6 35 35 H 1.08003 * 119.98245 * 180.02562 * 10 9 7 36 36 H 1.00898 * 110.99915 * 183.95130 * 11 2 1 37 37 H 1.08993 * 109.47004 * 300.00108 * 12 11 2 38 38 H 1.09002 * 109.47091 * 59.99861 * 12 11 2 39 39 H 1.09003 * 109.47125 * 185.00099 * 13 12 11 40 40 H 1.09005 * 109.46913 * 304.99707 * 13 12 11 41 41 H 1.09004 * 109.46887 * 299.99785 * 15 14 13 42 42 H 1.08992 * 109.47285 * 60.00038 * 15 14 13 43 43 H 0.97003 * 119.99156 * 179.97438 * 19 18 16 44 44 H 0.96706 * 117.00272 * 180.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5377 2.1529 -1.2305 5 6 2.2879 2.1375 -2.3916 6 6 1.8256 2.7838 -3.5223 7 6 0.6161 3.4568 -3.4885 8 9 0.1662 4.0944 -4.5914 9 6 -0.1318 3.4763 -2.3234 10 6 0.3295 2.8238 -1.1959 11 7 2.0196 -0.6924 1.1995 12 6 1.5486 -2.0834 1.2335 13 6 2.0782 -2.7705 2.4939 14 8 1.5096 -2.1506 3.6490 15 6 1.9417 -2.7201 4.8863 16 6 1.2830 -1.9938 6.0307 17 1 0.6028 -1.1785 5.8329 18 6 1.5495 -2.3694 7.3303 19 7 2.3782 -3.3619 7.5711 20 14 0.7336 -1.4687 8.7489 21 1 -0.7413 -1.5967 8.6337 22 1 1.1834 -2.0598 10.0347 23 1 1.1107 -0.0330 8.7060 24 6 2.0324 -0.7105 -1.2304 25 8 1.3397 -0.7704 -2.2186 26 8 3.2494 -1.2767 -1.2286 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.6767 1.9563 0.8899 31 1 3.1300 1.4425 0.0005 32 1 3.2339 1.6168 -2.4161 33 1 2.4100 2.7681 -4.4304 34 1 -1.0752 4.0013 -2.2959 35 1 -0.2539 2.8386 -0.2871 36 1 3.0262 -0.6500 1.2559 37 1 0.4588 -2.0979 1.2420 38 1 1.9121 -2.6118 0.3521 39 1 1.8036 -3.8253 2.4753 40 1 3.1637 -2.6783 2.5291 41 1 1.6646 -3.7739 4.9176 42 1 3.0243 -2.6264 4.9710 43 1 2.5660 -3.6258 8.4855 44 1 3.5282 -1.7208 -2.0411 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604222958.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:40 Heat of formation + Delta-G solvation = -159.895024 kcal Electronic energy + Delta-G solvation = -27557.952541 eV Core-core repulsion = 23389.726844 eV Total energy + Delta-G solvation = -4168.225697 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.14039 -41.13923 -39.31774 -37.50921 -36.46379 -36.15385 -33.33471 -32.54245 -31.48038 -30.27834 -28.11513 -27.17842 -26.23939 -24.57646 -23.27483 -22.43151 -22.16310 -21.29892 -19.99877 -18.22754 -17.89515 -17.32823 -16.62752 -16.51495 -16.12548 -15.97847 -15.81071 -15.54276 -15.07865 -14.90928 -14.40178 -14.31558 -14.15995 -13.84418 -13.58970 -13.55764 -13.20916 -12.85674 -12.63426 -12.37570 -12.20208 -12.04605 -11.90794 -11.73072 -11.60484 -11.44669 -11.28004 -11.05472 -10.88381 -10.77546 -10.69003 -10.45430 -10.00267 -9.37845 -9.09135 -8.83136 -8.79591 -8.53085 -8.13586 -6.08767 -4.09835 0.81762 0.94455 1.99952 2.76158 3.24505 3.33762 3.36373 3.40290 3.90945 3.98967 4.36105 4.36565 4.52490 4.55660 4.59380 4.63730 4.84241 4.94432 4.97196 5.11024 5.27773 5.35813 5.41885 5.52003 5.58589 5.60808 5.65709 5.69157 5.80948 5.82753 5.92829 5.95136 6.03719 6.07435 6.20772 6.24696 6.30210 6.59307 6.82443 7.11967 7.30768 7.45261 7.68205 7.82385 8.18476 8.61948 9.04011 9.54821 11.02841 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.019534 B = 0.002463 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.088241 B =11365.639231 C =12336.796432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.139 3.861 3 C -0.069 4.069 4 C -0.093 4.093 5 C -0.081 4.081 6 C -0.149 4.149 7 C 0.095 3.905 8 F -0.143 7.143 9 C -0.152 4.152 10 C -0.077 4.077 11 N -0.648 5.648 12 C 0.058 3.942 13 C 0.067 3.933 14 O -0.380 6.380 15 C 0.194 3.806 16 C -0.511 4.511 17 H 0.066 0.934 18 C 0.055 3.945 19 N -0.900 5.900 20 Si 0.908 3.092 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.275 1.275 24 C 0.447 3.553 25 O -0.506 6.506 26 O -0.519 6.519 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.108 0.892 31 H 0.085 0.915 32 H 0.125 0.875 33 H 0.132 0.868 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.353 0.647 37 H 0.085 0.915 38 H 0.036 0.964 39 H 0.042 0.958 40 H 0.037 0.963 41 H 0.002 0.998 42 H 0.004 0.996 43 H 0.264 0.736 44 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.640 10.262 -22.276 24.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.045 3.955 3 C -0.107 4.107 4 C -0.094 4.094 5 C -0.100 4.100 6 C -0.168 4.168 7 C 0.076 3.924 8 F -0.121 7.121 9 C -0.171 4.171 10 C -0.095 4.095 11 N -0.280 5.280 12 C -0.070 4.070 13 C -0.011 4.011 14 O -0.300 6.300 15 C 0.120 3.880 16 C -0.549 4.549 17 H 0.085 0.915 18 C -0.146 4.146 19 N -0.540 5.540 20 Si 0.735 3.265 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.200 1.200 24 C 0.286 3.714 25 O -0.392 6.392 26 O -0.331 6.331 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.104 0.896 30 H 0.127 0.873 31 H 0.103 0.897 32 H 0.143 0.857 33 H 0.150 0.850 34 H 0.154 0.846 35 H 0.156 0.844 36 H 0.173 0.827 37 H 0.103 0.897 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.020 0.980 42 H 0.022 0.978 43 H 0.073 0.927 44 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -0.252 10.732 -21.673 24.186 hybrid contribution 0.635 -0.638 -0.752 1.173 sum 0.383 10.095 -22.426 24.596 Atomic orbital electron populations 1.21945 0.90255 1.03684 1.03617 1.21098 0.97663 0.93480 0.83271 1.20656 1.01665 0.91574 0.96763 1.19827 0.95317 0.98945 0.95291 1.20846 0.99533 0.97801 0.91781 1.21056 0.95772 0.99974 1.00019 1.17727 0.94603 0.96606 0.83508 1.91496 1.89109 1.79802 1.51710 1.21151 1.01062 1.02642 0.92210 1.20990 0.95084 0.95231 0.98189 1.60477 1.17317 1.15871 1.34372 1.22162 1.01790 0.87026 0.96061 1.22175 0.96563 0.95170 0.87177 1.87944 1.69066 1.59230 1.13714 1.20180 0.94528 0.93369 0.79929 1.21018 1.26889 1.17433 0.89595 0.91535 1.24954 0.95424 0.95357 0.98861 1.69959 1.35403 1.27926 1.20687 0.86399 0.79686 0.79817 0.80577 1.20056 1.21257 1.19998 1.25265 0.78663 0.76149 0.91277 1.90702 1.56800 1.56084 1.35608 1.84587 1.35397 1.67421 1.45651 0.90804 0.91778 0.89552 0.87348 0.89681 0.85714 0.84959 0.84614 0.84386 0.82718 0.89689 0.94595 0.94008 0.94474 0.98018 0.97838 0.92674 0.73637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 7.18 37.16 0.27 -1.27 16 2 C 0.14 1.51 0.71 -132.75 -0.09 1.41 16 3 C -0.07 -0.63 4.71 -27.88 -0.13 -0.76 16 4 C -0.09 -0.86 4.09 -104.62 -0.43 -1.29 16 5 C -0.08 -0.75 8.34 -39.59 -0.33 -1.08 16 6 C -0.15 -1.41 10.03 -39.52 -0.40 -1.81 16 7 C 0.09 0.96 7.30 -39.42 -0.29 0.67 16 8 F -0.14 -1.54 17.27 2.25 0.04 -1.50 16 9 C -0.15 -1.37 10.03 -39.52 -0.40 -1.77 16 10 C -0.08 -0.67 7.88 -39.60 -0.31 -0.98 16 11 N -0.65 -8.37 5.92 -101.14 -0.60 -8.97 16 12 C 0.06 0.82 5.34 -3.82 -0.02 0.80 16 13 C 0.07 1.19 6.22 37.16 0.23 1.42 16 14 O -0.38 -8.86 10.27 -35.23 -0.36 -9.22 16 15 C 0.19 5.25 5.69 36.00 0.20 5.46 16 16 C -0.51 -14.90 9.43 -34.44 -0.32 -15.22 16 17 H 0.07 1.92 7.81 -52.48 -0.41 1.51 16 18 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 19 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 20 Si 0.91 21.71 29.54 -169.99 -5.02 16.68 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 24 C 0.45 4.94 4.60 36.00 0.17 5.11 16 25 O -0.51 -6.79 16.22 -18.75 -0.30 -7.10 16 26 O -0.52 -4.57 12.23 -39.24 -0.48 -5.04 16 27 H 0.07 0.80 5.90 -51.93 -0.31 0.49 16 28 H 0.06 0.76 6.40 -51.93 -0.33 0.43 16 29 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.11 0.95 8.08 -51.93 -0.42 0.53 16 31 H 0.08 0.69 8.08 -51.93 -0.42 0.27 16 32 H 0.12 0.99 8.04 -52.48 -0.42 0.57 16 33 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 34 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.14 0.97 8.02 -52.48 -0.42 0.55 16 36 H 0.35 4.31 8.38 -39.29 -0.33 3.98 16 37 H 0.08 1.24 6.30 -51.93 -0.33 0.92 16 38 H 0.04 0.45 6.64 -51.93 -0.34 0.11 16 39 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.00 0.06 8.14 -51.93 -0.42 -0.37 16 42 H 0.00 0.11 8.14 -51.93 -0.42 -0.32 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.40 2.03 9.10 45.56 0.41 2.44 16 LS Contribution 370.97 15.07 5.59 5.59 Total: -1.00 -33.78 370.97 -7.76 -41.55 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -5.41 Total: 1.91 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -1.95 Total: -7.83 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: 0.14 Total: -35.04 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -1.15 Total: -21.36 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.78 -7.76 -41.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604222958.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.348 kcal (2) G-P(sol) polarization free energy of solvation -33.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds