Wall clock time and date at job start Tue Mar 31 2020 14:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50699 * 109.46866 * 299.99792 * 3 2 1 5 5 C 1.38248 * 119.97666 * 269.72789 * 4 3 2 6 6 C 1.38199 * 120.02749 * 179.72788 * 5 4 3 7 7 C 1.38452 * 119.96984 * 0.56469 * 6 5 4 8 8 F 1.35107 * 120.02307 * 179.68304 * 7 6 5 9 9 C 1.38457 * 119.95418 * 359.71060 * 7 6 5 10 10 C 1.38194 * 119.96980 * 359.97438 * 9 7 6 11 11 N 1.46902 * 109.47094 * 119.99378 * 2 1 3 12 12 C 1.46905 * 110.99800 * 60.00278 * 11 2 1 13 13 C 1.53000 * 109.47234 * 179.97438 * 12 11 2 14 14 O 1.42896 * 109.47186 * 64.99938 * 13 12 11 15 15 C 1.42899 * 113.99987 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.46807 * 180.02562 * 15 14 13 17 17 H 1.08006 * 120.00396 * 359.97438 * 16 15 14 18 18 C 1.37885 * 120.00087 * 180.02562 * 16 15 14 19 19 N 1.31518 * 119.99286 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00226 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47484 * 59.99424 * 20 18 16 22 22 H 1.48497 * 109.47051 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47053 * 299.99355 * 20 18 16 24 24 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 25 25 O 1.20831 * 119.99975 * 25.00060 * 24 2 1 26 26 O 1.34225 * 120.00372 * 205.00006 * 24 2 1 27 27 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46952 * 300.00302 * 1 2 3 30 30 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 31 31 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 32 32 H 1.08008 * 119.98209 * 359.97438 * 5 4 3 33 33 H 1.07998 * 120.01020 * 180.25607 * 6 5 4 34 34 H 1.08000 * 120.01110 * 179.97438 * 9 7 6 35 35 H 1.08003 * 119.98245 * 180.02562 * 10 9 7 36 36 H 1.00898 * 110.99915 * 183.95130 * 11 2 1 37 37 H 1.08993 * 109.47004 * 300.00108 * 12 11 2 38 38 H 1.09002 * 109.47091 * 59.99861 * 12 11 2 39 39 H 1.09003 * 109.47125 * 185.00099 * 13 12 11 40 40 H 1.09005 * 109.46913 * 304.99707 * 13 12 11 41 41 H 1.09004 * 109.46887 * 299.99785 * 15 14 13 42 42 H 1.08992 * 109.47285 * 60.00038 * 15 14 13 43 43 H 0.97003 * 119.99156 * 179.97438 * 19 18 16 44 44 H 0.96706 * 117.00272 * 180.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5377 2.1529 -1.2305 5 6 2.2879 2.1375 -2.3916 6 6 1.8256 2.7838 -3.5223 7 6 0.6161 3.4568 -3.4885 8 9 0.1662 4.0944 -4.5914 9 6 -0.1318 3.4763 -2.3234 10 6 0.3295 2.8238 -1.1959 11 7 2.0196 -0.6924 1.1995 12 6 1.5486 -2.0834 1.2335 13 6 2.0782 -2.7705 2.4939 14 8 1.5096 -2.1506 3.6490 15 6 1.9417 -2.7201 4.8863 16 6 1.2830 -1.9938 6.0307 17 1 0.6028 -1.1785 5.8329 18 6 1.5495 -2.3694 7.3303 19 7 2.3782 -3.3619 7.5711 20 14 0.7336 -1.4687 8.7489 21 1 -0.7413 -1.5967 8.6337 22 1 1.1834 -2.0598 10.0347 23 1 1.1107 -0.0330 8.7060 24 6 2.0324 -0.7105 -1.2304 25 8 1.3397 -0.7704 -2.2186 26 8 3.2494 -1.2767 -1.2286 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.6767 1.9563 0.8899 31 1 3.1300 1.4425 0.0005 32 1 3.2339 1.6168 -2.4161 33 1 2.4100 2.7681 -4.4304 34 1 -1.0752 4.0013 -2.2959 35 1 -0.2539 2.8386 -0.2871 36 1 3.0262 -0.6500 1.2559 37 1 0.4588 -2.0979 1.2420 38 1 1.9121 -2.6118 0.3521 39 1 1.8036 -3.8253 2.4753 40 1 3.1637 -2.6783 2.5291 41 1 1.6646 -3.7739 4.9176 42 1 3.0243 -2.6264 4.9710 43 1 2.5660 -3.6258 8.4855 44 1 3.5282 -1.7208 -2.0411 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604222958.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:39 Heat of formation + Delta-G solvation = -182.675910 kcal Electronic energy + Delta-G solvation = -27558.940394 eV Core-core repulsion = 23389.726844 eV Total energy + Delta-G solvation = -4169.213550 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.91839 -41.98503 -40.03319 -38.85405 -37.64609 -37.15283 -34.96671 -34.03558 -32.15689 -31.31514 -29.57540 -28.55231 -27.43629 -25.42846 -24.43795 -23.96515 -23.30877 -22.28674 -20.82414 -19.07022 -18.64219 -18.60523 -18.20362 -17.48337 -17.36136 -17.11427 -16.65723 -16.57599 -16.46378 -16.26912 -15.75624 -15.35303 -15.05182 -14.85212 -14.66128 -14.48552 -14.34563 -14.05804 -13.79030 -13.47454 -13.25332 -13.16413 -12.93405 -12.85304 -12.81427 -12.65459 -12.54106 -12.40116 -12.21290 -12.10064 -11.87898 -11.73579 -11.64830 -11.21678 -10.80864 -10.14034 -10.05720 -9.59036 -9.50358 -8.27088 -6.38294 0.09751 0.26731 1.14079 1.43834 1.48311 1.56503 1.99404 2.38980 2.52880 2.97998 3.07025 3.24221 3.27835 3.64927 3.76260 3.80164 3.82121 3.96545 4.17134 4.25413 4.29219 4.30734 4.36985 4.56104 4.62216 4.70799 4.73574 4.77144 4.86233 4.91968 4.96411 5.01974 5.09969 5.14162 5.20779 5.24313 5.25818 5.51299 5.55977 5.60794 5.82488 5.90757 6.03104 6.31933 6.61803 6.90730 6.93984 7.33597 8.84942 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.019534 B = 0.002463 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.088241 B =11365.639231 C =12336.796432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.140 3.860 3 C -0.064 4.064 4 C -0.097 4.097 5 C -0.088 4.088 6 C -0.157 4.157 7 C 0.075 3.925 8 F -0.151 7.151 9 C -0.155 4.155 10 C -0.081 4.081 11 N -0.658 5.658 12 C 0.070 3.930 13 C 0.059 3.941 14 O -0.391 6.391 15 C 0.209 3.791 16 C -0.543 4.543 17 H 0.063 0.937 18 C 0.005 3.995 19 N -0.932 5.932 20 Si 0.981 3.019 21 H -0.266 1.266 22 H -0.278 1.278 23 H -0.264 1.264 24 C 0.454 3.546 25 O -0.532 6.532 26 O -0.514 6.514 27 H 0.076 0.924 28 H 0.052 0.948 29 H 0.088 0.912 30 H 0.112 0.888 31 H 0.096 0.904 32 H 0.136 0.864 33 H 0.144 0.856 34 H 0.151 0.849 35 H 0.154 0.846 36 H 0.357 0.643 37 H 0.079 0.921 38 H 0.057 0.943 39 H 0.046 0.954 40 H 0.045 0.955 41 H -0.018 1.018 42 H -0.014 1.014 43 H 0.269 0.731 44 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.549 11.115 -22.111 24.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.047 3.953 3 C -0.102 4.102 4 C -0.098 4.098 5 C -0.106 4.106 6 C -0.176 4.176 7 C 0.056 3.944 8 F -0.129 7.129 9 C -0.174 4.174 10 C -0.098 4.098 11 N -0.291 5.291 12 C -0.059 4.059 13 C -0.019 4.019 14 O -0.311 6.311 15 C 0.134 3.866 16 C -0.580 4.580 17 H 0.081 0.919 18 C -0.193 4.193 19 N -0.572 5.572 20 Si 0.804 3.196 21 H -0.191 1.191 22 H -0.203 1.203 23 H -0.189 1.189 24 C 0.295 3.705 25 O -0.420 6.420 26 O -0.328 6.328 27 H 0.095 0.905 28 H 0.071 0.929 29 H 0.106 0.894 30 H 0.131 0.869 31 H 0.114 0.886 32 H 0.154 0.846 33 H 0.162 0.838 34 H 0.169 0.831 35 H 0.172 0.828 36 H 0.178 0.822 37 H 0.098 0.902 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.000 1.000 42 H 0.003 0.997 43 H 0.078 0.922 44 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -0.320 11.578 -21.542 24.458 hybrid contribution 0.730 -0.958 -0.899 1.503 sum 0.410 10.620 -22.440 24.830 Atomic orbital electron populations 1.21928 0.90605 1.03025 1.03831 1.21091 0.97438 0.94269 0.82509 1.20640 1.02352 0.90272 0.96913 1.19912 0.95564 0.99025 0.95300 1.21024 1.00063 0.97821 0.91686 1.21259 0.95778 0.99815 1.00715 1.17992 0.95330 0.97361 0.83752 1.91471 1.89255 1.80065 1.52155 1.21379 1.01576 1.02542 0.91899 1.21221 0.95095 0.94821 0.98702 1.60430 1.17732 1.15152 1.35833 1.21990 1.01369 0.87891 0.94647 1.22489 0.97112 0.95771 0.86480 1.87898 1.69597 1.59672 1.13924 1.19787 0.93140 0.92161 0.81548 1.21364 1.27657 1.18011 0.90987 0.91894 1.25947 0.95716 0.95997 1.01688 1.70070 1.36321 1.29100 1.21710 0.85263 0.78830 0.78758 0.76747 1.19106 1.20294 1.18896 1.25135 0.78909 0.75743 0.90760 1.90704 1.57648 1.57129 1.36477 1.84540 1.34202 1.67118 1.46923 0.90526 0.92882 0.89352 0.86926 0.88562 0.84593 0.83806 0.83110 0.82803 0.82231 0.90245 0.92545 0.93576 0.93694 1.00047 0.99672 0.92194 0.71517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 7.18 71.98 0.52 -2.37 16 2 C 0.14 2.83 0.71 2.78 0.00 2.83 16 3 C -0.06 -1.05 4.71 29.85 0.14 -0.91 16 4 C -0.10 -1.65 4.09 -19.86 -0.08 -1.73 16 5 C -0.09 -1.50 8.34 22.26 0.19 -1.31 16 6 C -0.16 -2.83 10.03 22.31 0.22 -2.60 16 7 C 0.07 1.47 7.30 22.37 0.16 1.63 16 8 F -0.15 -3.22 17.27 44.97 0.78 -2.44 16 9 C -0.16 -2.64 10.03 22.31 0.22 -2.41 16 10 C -0.08 -1.29 7.88 22.26 0.18 -1.11 16 11 N -0.66 -16.06 5.92 -473.89 -2.81 -18.86 16 12 C 0.07 1.88 5.34 86.30 0.46 2.34 16 13 C 0.06 2.05 6.22 71.98 0.45 2.49 16 14 O -0.39 -18.35 10.27 -148.98 -1.53 -19.88 16 15 C 0.21 11.52 5.69 71.23 0.41 11.92 16 16 C -0.54 -31.87 9.43 25.60 0.24 -31.63 16 17 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 18 C 0.00 0.27 5.46 84.66 0.46 0.73 16 19 N -0.93 -55.70 13.29 21.45 0.28 -55.41 16 20 Si 0.98 43.90 29.54 68.60 2.03 45.93 16 21 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 22 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 23 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 24 C 0.45 9.22 4.60 71.23 0.33 9.55 16 25 O -0.53 -13.50 16.22 21.95 0.36 -13.15 16 26 O -0.51 -7.85 12.23 -51.37 -0.63 -8.48 16 27 H 0.08 1.57 5.90 -2.39 -0.01 1.56 16 28 H 0.05 1.22 6.40 -2.39 -0.02 1.21 16 29 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.11 1.76 8.08 -2.39 -0.02 1.75 16 31 H 0.10 1.36 8.08 -2.39 -0.02 1.34 16 32 H 0.14 1.92 8.04 -2.91 -0.02 1.90 16 33 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 34 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 35 H 0.15 1.88 8.02 -2.91 -0.02 1.86 16 36 H 0.36 8.12 8.38 -89.70 -0.75 7.37 16 37 H 0.08 2.26 6.30 -2.39 -0.02 2.24 16 38 H 0.06 1.31 6.64 -2.39 -0.02 1.29 16 39 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 41 H -0.02 -1.05 8.14 -2.38 -0.02 -1.07 16 42 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 43 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 44 H 0.42 3.19 9.10 -74.05 -0.67 2.52 16 Total: -1.00 -71.72 370.97 1.99 -69.74 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -0.39 Total: 15.14 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: 3.89 Total: -12.58 kcal Atomic # 7 Polarization: -71.75 SS G_CDS: -2.52 Total: -74.27 kcal Atomic # 8 Polarization: -39.70 SS G_CDS: -1.80 Total: -41.50 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.78 Total: -2.44 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -71.72 1.99 -69.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604222958.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.940 kcal (2) G-P(sol) polarization free energy of solvation -71.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds