Wall clock time and date at job start Tue Mar 31 2020 14:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47598 * 2 1 4 4 C 1.50697 * 109.46953 * 60.00266 * 3 2 1 5 5 C 1.38241 * 119.97433 * 89.99784 * 4 3 2 6 6 C 1.38205 * 120.02377 * 179.74187 * 5 4 3 7 7 C 1.38455 * 119.97496 * 0.26259 * 6 5 4 8 8 F 1.35097 * 120.02414 * 180.02562 * 7 6 5 9 9 C 1.38464 * 119.95049 * 359.97438 * 7 6 5 10 10 C 1.38201 * 119.97214 * 0.02562 * 9 7 6 11 11 N 1.46903 * 109.46765 * 239.99844 * 2 1 3 12 12 C 1.46897 * 111.00313 * 300.00336 * 11 2 1 13 13 C 1.52998 * 109.47503 * 179.97438 * 12 11 2 14 14 O 1.42901 * 109.46795 * 64.99784 * 13 12 11 15 15 C 1.42910 * 113.99772 * 180.02562 * 14 13 12 16 16 C 1.50704 * 109.46868 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99823 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99651 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99963 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 120.00000 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47005 * 90.00133 * 20 18 16 22 22 H 1.48498 * 109.46691 * 209.99448 * 20 18 16 23 23 H 1.48496 * 109.46975 * 329.99836 * 20 18 16 24 24 C 1.50698 * 109.47150 * 120.00377 * 2 1 3 25 25 O 1.20828 * 119.99886 * 334.99807 * 24 2 1 26 26 O 1.34231 * 120.00044 * 154.99335 * 24 2 1 27 27 H 1.08995 * 109.47167 * 59.99434 * 1 2 3 28 28 H 1.08996 * 109.47322 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46617 * 300.00188 * 1 2 3 30 30 H 1.09002 * 109.47035 * 300.00221 * 3 2 1 31 31 H 1.08994 * 109.46906 * 180.02562 * 3 2 1 32 32 H 1.08002 * 119.99029 * 0.02809 * 5 4 3 33 33 H 1.08004 * 120.00758 * 180.27782 * 6 5 4 34 34 H 1.07993 * 120.01407 * 180.02562 * 9 7 6 35 35 H 1.07996 * 119.98812 * 180.02562 * 10 9 7 36 36 H 1.00905 * 110.99648 * 63.95922 * 11 2 1 37 37 H 1.08999 * 109.47447 * 300.00133 * 12 11 2 38 38 H 1.09001 * 109.47004 * 59.99877 * 12 11 2 39 39 H 1.08999 * 109.47426 * 185.00106 * 13 12 11 40 40 H 1.09004 * 109.46953 * 305.00292 * 13 12 11 41 41 H 1.08994 * 109.46887 * 300.00174 * 15 14 13 42 42 H 1.08996 * 109.46809 * 60.00085 * 15 14 13 43 43 H 0.96995 * 120.00303 * 179.97438 * 19 18 16 44 44 H 0.96702 * 117.00061 * 179.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5379 2.1528 1.2305 5 6 2.2855 2.1326 2.3931 6 6 1.8284 2.7882 3.5207 7 6 0.6187 3.4609 3.4870 8 9 0.1712 4.1026 4.5885 9 6 -0.1316 3.4764 2.3234 10 6 0.3275 2.8201 1.1971 11 7 2.0196 -0.6926 -1.1995 12 6 1.5485 -2.0835 -1.2335 13 6 2.0770 -2.7704 -2.4943 14 8 3.5019 -2.8553 -2.4288 15 6 4.0996 -3.4835 -3.5647 16 6 5.5960 -3.5193 -3.3896 17 1 6.0456 -3.1034 -2.5000 18 6 6.3910 -4.0828 -4.3650 19 7 7.6968 -4.1136 -4.2124 20 14 5.6132 -4.8014 -5.9039 21 1 5.5116 -3.7477 -6.9454 22 1 6.4537 -5.9167 -6.4086 23 1 4.2563 -5.3109 -5.5810 24 6 2.0324 -0.7105 1.2304 25 8 1.3396 -0.7704 2.2186 26 8 3.2493 -1.2769 1.2285 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 3.1301 1.4423 -0.0005 32 1 3.2292 1.6081 2.4191 33 1 2.4148 2.7760 4.4276 34 1 -1.0750 4.0011 2.2959 35 1 -0.2572 2.8323 0.2893 36 1 1.7502 -0.1989 -2.0373 37 1 1.9119 -2.6119 -0.3521 38 1 0.4586 -2.0979 -1.2420 39 1 1.6560 -3.7733 -2.5653 40 1 1.7874 -2.1919 -3.3717 41 1 3.7207 -4.5012 -3.6583 42 1 3.8520 -2.9195 -4.4640 43 1 8.2561 -4.5104 -4.8984 44 1 3.5281 -1.7209 2.0411 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604222959.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:44 Heat of formation + Delta-G solvation = -151.251787 kcal Electronic energy + Delta-G solvation = -27688.112127 eV Core-core repulsion = 23520.261229 eV Total energy + Delta-G solvation = -4167.850898 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.14011 -40.99608 -39.25273 -37.64710 -36.50256 -35.97733 -33.34334 -32.49704 -31.47668 -30.37370 -28.28063 -27.43647 -26.48732 -24.71679 -23.27181 -22.40730 -21.79980 -21.37193 -19.92703 -18.09669 -17.87617 -16.94335 -16.86470 -16.57942 -16.24508 -15.82964 -15.76891 -15.53781 -15.05593 -14.92155 -14.48101 -14.27881 -14.15742 -13.91088 -13.78061 -13.52630 -13.30124 -12.95223 -12.65560 -12.53966 -12.27622 -12.13919 -12.07287 -11.74861 -11.69954 -11.38685 -11.36482 -11.24306 -10.93949 -10.73688 -10.53233 -10.44747 -9.84819 -9.37769 -9.14133 -8.84044 -8.81843 -8.48749 -8.41761 -6.08549 -4.06775 0.81911 0.94557 2.17155 3.00741 3.24624 3.25226 3.32349 3.33367 3.80219 3.98834 4.35888 4.37221 4.47947 4.51276 4.59203 4.63879 4.64895 4.94037 4.95592 5.15571 5.22546 5.25211 5.32182 5.35723 5.45650 5.46935 5.58799 5.62293 5.72236 5.79310 5.82355 5.87692 5.89923 5.93532 6.11472 6.21265 6.52752 6.59389 6.61729 6.78633 7.02409 7.24256 7.63259 7.98898 8.07099 8.71168 9.05442 9.51180 11.04633 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.026090 B = 0.002425 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.934574 B =11541.860247 C =11828.828517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.131 3.869 3 C -0.070 4.070 4 C -0.093 4.093 5 C -0.077 4.077 6 C -0.147 4.147 7 C 0.095 3.905 8 F -0.142 7.142 9 C -0.154 4.154 10 C -0.081 4.081 11 N -0.651 5.651 12 C 0.058 3.942 13 C 0.063 3.937 14 O -0.361 6.361 15 C 0.167 3.833 16 C -0.513 4.513 17 H 0.084 0.916 18 C 0.071 3.929 19 N -0.896 5.896 20 Si 0.875 3.125 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.267 1.267 24 C 0.493 3.507 25 O -0.517 6.517 26 O -0.485 6.485 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.130 0.870 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.350 0.650 37 H 0.080 0.920 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.038 0.962 41 H -0.001 1.001 42 H -0.004 1.004 43 H 0.266 0.734 44 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.711 14.104 11.130 25.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.038 3.962 3 C -0.107 4.107 4 C -0.094 4.094 5 C -0.095 4.095 6 C -0.166 4.166 7 C 0.076 3.924 8 F -0.121 7.121 9 C -0.173 4.173 10 C -0.099 4.099 11 N -0.284 5.284 12 C -0.071 4.071 13 C -0.015 4.015 14 O -0.279 6.279 15 C 0.092 3.908 16 C -0.551 4.551 17 H 0.102 0.898 18 C -0.131 4.131 19 N -0.535 5.535 20 Si 0.702 3.298 21 H -0.200 1.200 22 H -0.209 1.209 23 H -0.192 1.192 24 C 0.335 3.665 25 O -0.406 6.406 26 O -0.294 6.294 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.112 0.888 31 H 0.117 0.883 32 H 0.147 0.853 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.171 0.829 37 H 0.098 0.902 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.017 0.983 42 H 0.014 0.986 43 H 0.076 0.924 44 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -17.125 14.138 11.413 24.968 hybrid contribution -1.298 -0.660 -0.565 1.562 sum -18.423 13.478 10.848 25.273 Atomic orbital electron populations 1.22565 0.94033 1.03537 1.03777 1.20697 0.93544 0.93468 0.88512 1.20632 1.03165 0.90924 0.95984 1.19823 0.95179 0.98964 0.95441 1.20923 0.99701 0.97266 0.91618 1.21106 0.95696 0.99622 1.00188 1.17725 0.94619 0.96545 0.83526 1.91493 1.89176 1.79618 1.51817 1.21106 1.01043 1.02792 0.92326 1.20902 0.95128 0.95885 0.97992 1.60449 1.62888 1.02277 1.02836 1.22133 0.96155 0.88642 1.00153 1.22261 0.85891 0.97808 0.95555 1.88059 1.15321 1.80748 1.43803 1.20594 0.94889 0.90950 0.84402 1.20896 0.88113 1.38898 1.07238 0.89821 1.24773 0.94700 0.95619 0.97977 1.69874 1.03492 1.45295 1.34856 0.86865 0.79711 0.79385 0.83827 1.20003 1.20879 1.19220 1.23115 0.79215 0.75272 0.88942 1.90715 1.57605 1.56921 1.35326 1.84793 1.33893 1.66086 1.44618 0.90962 0.91601 0.90185 0.88800 0.88270 0.85257 0.84777 0.84777 0.84893 0.82929 0.90185 0.93954 0.93905 0.94426 0.98304 0.98585 0.92447 0.73931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.63 7.16 37.16 0.27 -1.36 16 2 C 0.13 1.39 0.71 -132.75 -0.09 1.30 16 3 C -0.07 -0.63 4.71 -27.88 -0.13 -0.76 16 4 C -0.09 -0.86 4.10 -104.62 -0.43 -1.29 16 5 C -0.08 -0.76 8.32 -39.59 -0.33 -1.09 16 6 C -0.15 -1.45 10.03 -39.51 -0.40 -1.85 16 7 C 0.09 0.96 7.30 -39.42 -0.29 0.68 16 8 F -0.14 -1.54 17.27 2.25 0.04 -1.50 16 9 C -0.15 -1.33 10.03 -39.51 -0.40 -1.73 16 10 C -0.08 -0.66 7.86 -39.59 -0.31 -0.97 16 11 N -0.65 -8.09 5.81 -101.14 -0.59 -8.68 16 12 C 0.06 0.77 5.34 -3.83 -0.02 0.75 16 13 C 0.06 1.03 6.22 37.16 0.23 1.26 16 14 O -0.36 -8.17 10.27 -35.23 -0.36 -8.53 16 15 C 0.17 4.19 4.76 36.01 0.17 4.36 16 16 C -0.51 -15.20 9.99 -34.44 -0.34 -15.54 16 17 H 0.08 2.73 8.06 -52.49 -0.42 2.30 16 18 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 19 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 20 Si 0.88 21.26 27.47 -169.99 -4.67 16.60 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 24 C 0.49 6.26 4.58 36.00 0.17 6.43 16 25 O -0.52 -7.40 16.21 -18.75 -0.30 -7.71 16 26 O -0.49 -6.29 12.48 -39.26 -0.49 -6.78 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.64 6.40 -51.93 -0.33 0.31 16 29 H 0.08 0.77 5.89 -51.93 -0.31 0.47 16 30 H 0.09 0.65 8.09 -51.93 -0.42 0.23 16 31 H 0.10 0.99 8.09 -51.93 -0.42 0.57 16 32 H 0.13 1.21 8.03 -52.49 -0.42 0.79 16 33 H 0.13 1.12 8.06 -52.48 -0.42 0.69 16 34 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.13 0.76 8.01 -52.49 -0.42 0.34 16 36 H 0.35 3.69 8.72 -39.29 -0.34 3.35 16 37 H 0.08 1.20 6.64 -51.93 -0.34 0.86 16 38 H 0.04 0.46 6.30 -51.93 -0.33 0.13 16 39 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.00 -0.02 7.20 -51.93 -0.37 -0.39 16 42 H 0.00 -0.08 7.57 -51.93 -0.39 -0.48 16 43 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.40 3.58 9.10 45.56 0.41 4.00 16 LS Contribution 367.74 15.07 5.54 5.54 Total: -1.00 -35.27 367.74 -7.45 -42.72 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -5.39 Total: 3.01 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -2.00 Total: -7.84 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: 0.19 Total: -35.51 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -1.16 Total: -23.02 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.60 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.27 -7.45 -42.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604222959.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.533 kcal (2) G-P(sol) polarization free energy of solvation -35.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds