Wall clock time and date at job start Tue Mar 31 2020 14:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47598 * 2 1 4 4 C 1.50697 * 109.46953 * 60.00266 * 3 2 1 5 5 C 1.38241 * 119.97433 * 89.99784 * 4 3 2 6 6 C 1.38205 * 120.02377 * 179.74187 * 5 4 3 7 7 C 1.38455 * 119.97496 * 0.26259 * 6 5 4 8 8 F 1.35097 * 120.02414 * 180.02562 * 7 6 5 9 9 C 1.38464 * 119.95049 * 359.97438 * 7 6 5 10 10 C 1.38201 * 119.97214 * 0.02562 * 9 7 6 11 11 N 1.46903 * 109.46765 * 239.99844 * 2 1 3 12 12 C 1.46897 * 111.00313 * 300.00336 * 11 2 1 13 13 C 1.52998 * 109.47503 * 179.97438 * 12 11 2 14 14 O 1.42901 * 109.46795 * 64.99784 * 13 12 11 15 15 C 1.42910 * 113.99772 * 180.02562 * 14 13 12 16 16 C 1.50704 * 109.46868 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99823 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99651 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99963 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 120.00000 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47005 * 90.00133 * 20 18 16 22 22 H 1.48498 * 109.46691 * 209.99448 * 20 18 16 23 23 H 1.48496 * 109.46975 * 329.99836 * 20 18 16 24 24 C 1.50698 * 109.47150 * 120.00377 * 2 1 3 25 25 O 1.20828 * 119.99886 * 334.99807 * 24 2 1 26 26 O 1.34231 * 120.00044 * 154.99335 * 24 2 1 27 27 H 1.08995 * 109.47167 * 59.99434 * 1 2 3 28 28 H 1.08996 * 109.47322 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46617 * 300.00188 * 1 2 3 30 30 H 1.09002 * 109.47035 * 300.00221 * 3 2 1 31 31 H 1.08994 * 109.46906 * 180.02562 * 3 2 1 32 32 H 1.08002 * 119.99029 * 0.02809 * 5 4 3 33 33 H 1.08004 * 120.00758 * 180.27782 * 6 5 4 34 34 H 1.07993 * 120.01407 * 180.02562 * 9 7 6 35 35 H 1.07996 * 119.98812 * 180.02562 * 10 9 7 36 36 H 1.00905 * 110.99648 * 63.95922 * 11 2 1 37 37 H 1.08999 * 109.47447 * 300.00133 * 12 11 2 38 38 H 1.09001 * 109.47004 * 59.99877 * 12 11 2 39 39 H 1.08999 * 109.47426 * 185.00106 * 13 12 11 40 40 H 1.09004 * 109.46953 * 305.00292 * 13 12 11 41 41 H 1.08994 * 109.46887 * 300.00174 * 15 14 13 42 42 H 1.08996 * 109.46809 * 60.00085 * 15 14 13 43 43 H 0.96995 * 120.00303 * 179.97438 * 19 18 16 44 44 H 0.96702 * 117.00061 * 179.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5379 2.1528 1.2305 5 6 2.2855 2.1326 2.3931 6 6 1.8284 2.7882 3.5207 7 6 0.6187 3.4609 3.4870 8 9 0.1712 4.1026 4.5885 9 6 -0.1316 3.4764 2.3234 10 6 0.3275 2.8201 1.1971 11 7 2.0196 -0.6926 -1.1995 12 6 1.5485 -2.0835 -1.2335 13 6 2.0770 -2.7704 -2.4943 14 8 3.5019 -2.8553 -2.4288 15 6 4.0996 -3.4835 -3.5647 16 6 5.5960 -3.5193 -3.3896 17 1 6.0456 -3.1034 -2.5000 18 6 6.3910 -4.0828 -4.3650 19 7 7.6968 -4.1136 -4.2124 20 14 5.6132 -4.8014 -5.9039 21 1 5.5116 -3.7477 -6.9454 22 1 6.4537 -5.9167 -6.4086 23 1 4.2563 -5.3109 -5.5810 24 6 2.0324 -0.7105 1.2304 25 8 1.3396 -0.7704 2.2186 26 8 3.2493 -1.2769 1.2285 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 3.1301 1.4423 -0.0005 32 1 3.2292 1.6081 2.4191 33 1 2.4148 2.7760 4.4276 34 1 -1.0750 4.0011 2.2959 35 1 -0.2572 2.8323 0.2893 36 1 1.7502 -0.1989 -2.0373 37 1 1.9119 -2.6119 -0.3521 38 1 0.4586 -2.0979 -1.2420 39 1 1.6560 -3.7733 -2.5653 40 1 1.7874 -2.1919 -3.3717 41 1 3.7207 -4.5012 -3.6583 42 1 3.8520 -2.9195 -4.4640 43 1 8.2561 -4.5104 -4.8984 44 1 3.5281 -1.7209 2.0411 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604222959.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:43 Heat of formation + Delta-G solvation = -176.786682 kcal Electronic energy + Delta-G solvation = -27689.219403 eV Core-core repulsion = 23520.261229 eV Total energy + Delta-G solvation = -4168.958174 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 325.152 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.92527 -41.90459 -40.02342 -38.91040 -37.75945 -37.04187 -34.90584 -34.04459 -32.15702 -31.41638 -29.93943 -28.45117 -27.52263 -25.62084 -23.97159 -23.91198 -23.36016 -22.28063 -20.82722 -19.07780 -19.00384 -18.65628 -17.80687 -17.48740 -17.34425 -17.16598 -16.61213 -16.42362 -16.34145 -16.28676 -15.82163 -15.29641 -15.10556 -14.82163 -14.62081 -14.58468 -14.43925 -14.18342 -14.13730 -13.66017 -13.27997 -13.07028 -13.01914 -12.88022 -12.72410 -12.56300 -12.47590 -12.42439 -12.25238 -11.92859 -11.91547 -11.76769 -11.44234 -11.24902 -10.87382 -10.23258 -10.06266 -9.58532 -9.35487 -8.32018 -6.38963 0.09436 0.26150 1.19773 1.36088 1.39575 1.50179 2.16038 2.33360 2.52689 2.94649 3.00642 3.17295 3.27369 3.64727 3.75834 3.80649 3.87962 3.96170 4.21089 4.27060 4.29323 4.29791 4.35756 4.51116 4.59215 4.62879 4.68242 4.72895 4.77229 4.88432 4.94504 4.98712 5.09057 5.10475 5.13797 5.18002 5.23652 5.50985 5.51641 5.60403 5.85920 5.90614 6.02889 6.43417 6.66182 6.87937 7.06032 7.25720 8.85353 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.026090 B = 0.002425 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.934574 B =11541.860247 C =11828.828517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.134 3.866 3 C -0.065 4.065 4 C -0.097 4.097 5 C -0.093 4.093 6 C -0.160 4.160 7 C 0.075 3.925 8 F -0.151 7.151 9 C -0.153 4.153 10 C -0.075 4.075 11 N -0.669 5.669 12 C 0.066 3.934 13 C 0.053 3.947 14 O -0.390 6.390 15 C 0.179 3.821 16 C -0.539 4.539 17 H 0.028 0.972 18 C 0.009 3.991 19 N -0.945 5.945 20 Si 0.957 3.043 21 H -0.258 1.258 22 H -0.277 1.277 23 H -0.245 1.245 24 C 0.490 3.510 25 O -0.539 6.539 26 O -0.503 6.503 27 H 0.104 0.896 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.124 0.876 31 H 0.083 0.917 32 H 0.124 0.876 33 H 0.139 0.861 34 H 0.156 0.844 35 H 0.166 0.834 36 H 0.363 0.637 37 H 0.056 0.944 38 H 0.078 0.922 39 H 0.054 0.946 40 H 0.060 0.940 41 H 0.007 0.993 42 H 0.012 0.988 43 H 0.271 0.729 44 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.801 14.427 8.649 26.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.042 3.958 3 C -0.103 4.103 4 C -0.098 4.098 5 C -0.112 4.112 6 C -0.179 4.179 7 C 0.056 3.944 8 F -0.129 7.129 9 C -0.172 4.172 10 C -0.093 4.093 11 N -0.304 5.304 12 C -0.063 4.063 13 C -0.024 4.024 14 O -0.309 6.309 15 C 0.103 3.897 16 C -0.577 4.577 17 H 0.046 0.954 18 C -0.188 4.188 19 N -0.585 5.585 20 Si 0.778 3.222 21 H -0.183 1.183 22 H -0.202 1.202 23 H -0.168 1.168 24 C 0.333 3.667 25 O -0.428 6.428 26 O -0.314 6.314 27 H 0.123 0.877 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.142 0.858 31 H 0.101 0.899 32 H 0.142 0.858 33 H 0.156 0.844 34 H 0.174 0.826 35 H 0.183 0.817 36 H 0.186 0.814 37 H 0.075 0.925 38 H 0.095 0.905 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.025 0.975 42 H 0.030 0.970 43 H 0.080 0.920 44 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -20.231 14.476 8.954 26.439 hybrid contribution -0.278 -0.721 0.345 0.847 sum -20.509 13.754 9.299 26.387 Atomic orbital electron populations 1.22560 0.92183 1.03541 1.05103 1.20794 0.94753 0.93602 0.86662 1.20636 1.02299 0.90183 0.97147 1.19932 0.95691 0.99125 0.95059 1.21013 1.00012 0.97823 0.92313 1.21232 0.96109 0.99965 1.00555 1.17991 0.95162 0.97229 0.84051 1.91467 1.89259 1.79855 1.52354 1.21418 1.01573 1.02443 0.91731 1.21236 0.94580 0.94537 0.98917 1.60319 1.63950 1.02148 1.04021 1.22025 0.97816 0.88816 0.97657 1.22639 0.82373 0.99370 0.98010 1.88014 1.19272 1.80587 1.43026 1.20280 0.91949 0.91779 0.85722 1.21179 0.91297 1.39384 1.05816 0.95371 1.25869 0.95106 0.95642 1.02196 1.70044 1.05544 1.46304 1.36619 0.85590 0.79517 0.78809 0.78270 1.18288 1.20231 1.16818 1.23674 0.78680 0.74768 0.89560 1.90697 1.57997 1.57779 1.36346 1.84785 1.34503 1.66361 1.45758 0.87690 0.92281 0.90706 0.85800 0.89880 0.85828 0.84352 0.82594 0.81662 0.81442 0.92530 0.90480 0.92782 0.92184 0.97517 0.97040 0.91967 0.72594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.60 7.16 71.98 0.52 -2.08 16 2 C 0.13 2.63 0.71 2.78 0.00 2.63 16 3 C -0.07 -1.06 4.71 29.85 0.14 -0.92 16 4 C -0.10 -1.66 4.10 -19.86 -0.08 -1.75 16 5 C -0.09 -1.88 8.32 22.26 0.19 -1.70 16 6 C -0.16 -3.23 10.03 22.31 0.22 -3.01 16 7 C 0.07 1.49 7.30 22.38 0.16 1.65 16 8 F -0.15 -3.25 17.27 44.97 0.78 -2.47 16 9 C -0.15 -2.35 10.03 22.31 0.22 -2.12 16 10 C -0.08 -1.00 7.86 22.26 0.18 -0.83 16 11 N -0.67 -15.33 5.81 -473.90 -2.75 -18.08 16 12 C 0.07 1.62 5.34 86.30 0.46 2.08 16 13 C 0.05 1.62 6.22 71.98 0.45 2.06 16 14 O -0.39 -17.47 10.27 -148.98 -1.53 -19.00 16 15 C 0.18 8.76 4.76 71.24 0.34 9.10 16 16 C -0.54 -32.73 9.99 25.60 0.26 -32.48 16 17 H 0.03 1.95 8.06 -2.91 -0.02 1.92 16 18 C 0.01 0.54 5.47 84.66 0.46 1.01 16 19 N -0.95 -59.65 13.96 21.45 0.30 -59.35 16 20 Si 0.96 42.91 27.47 68.60 1.88 44.79 16 21 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 22 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 23 H -0.24 -10.03 6.54 99.48 0.65 -9.37 16 24 C 0.49 12.45 4.58 71.24 0.33 12.77 16 25 O -0.54 -15.48 16.21 21.96 0.36 -15.13 16 26 O -0.50 -13.65 12.48 -51.43 -0.64 -14.29 16 27 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.06 0.97 6.40 -2.39 -0.02 0.95 16 29 H 0.07 1.23 5.89 -2.39 -0.01 1.21 16 30 H 0.12 1.25 8.09 -2.39 -0.02 1.23 16 31 H 0.08 1.64 8.09 -2.39 -0.02 1.62 16 32 H 0.12 2.50 8.03 -2.91 -0.02 2.48 16 33 H 0.14 2.48 8.06 -2.91 -0.02 2.45 16 34 H 0.16 1.64 8.06 -2.91 -0.02 1.61 16 35 H 0.17 1.10 8.01 -2.91 -0.02 1.08 16 36 H 0.36 6.51 8.72 -89.69 -0.78 5.73 16 37 H 0.06 1.67 6.64 -2.39 -0.02 1.66 16 38 H 0.08 1.39 6.30 -2.39 -0.02 1.38 16 39 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.06 1.56 8.14 -2.39 -0.02 1.55 16 41 H 0.01 0.34 7.20 -2.39 -0.02 0.32 16 42 H 0.01 0.54 7.57 -2.39 -0.02 0.53 16 43 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 44 H 0.41 8.09 9.10 -74.06 -0.67 7.41 16 Total: -1.00 -79.38 367.74 1.76 -77.62 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -0.47 Total: 19.49 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: 3.84 Total: -13.58 kcal Atomic # 7 Polarization: -74.98 SS G_CDS: -2.45 Total: -77.43 kcal Atomic # 8 Polarization: -46.60 SS G_CDS: -1.82 Total: -48.42 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.78 Total: -2.47 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 1.88 Total: 44.79 kcal Total: -79.38 1.76 -77.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604222959.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.170 kcal (2) G-P(sol) polarization free energy of solvation -79.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds