Wall clock time and date at job start Tue Mar 31 2020 14:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46901 * 109.47347 * 2 1 4 4 C 1.46904 * 110.99802 * 299.99704 * 3 2 1 5 5 C 1.50704 * 109.47113 * 179.97438 * 4 3 2 6 6 C 1.38634 * 119.74839 * 269.73165 * 5 4 3 7 7 C 1.37619 * 120.24294 * 179.72398 * 6 5 4 8 8 C 1.40720 * 119.74615 * 0.56381 * 7 6 5 9 9 C 1.41392 * 120.24340 * 179.68137 * 8 7 6 10 10 H 1.07999 * 120.00216 * 24.41557 * 9 8 7 11 11 C 1.39941 * 120.00039 * 204.40587 * 9 8 7 12 12 N 1.30821 * 120.00054 * 17.87073 * 11 9 8 13 13 Si 1.86800 * 120.00114 * 197.87041 * 11 9 8 14 14 H 1.48494 * 109.47296 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47304 * 120.00255 * 13 11 9 16 16 H 1.48501 * 109.47160 * 240.00002 * 13 11 9 17 17 C 1.40714 * 119.50918 * 359.71205 * 8 7 6 18 18 C 1.37622 * 119.74661 * 359.97438 * 17 8 7 19 19 C 1.50697 * 109.47410 * 239.99790 * 2 1 3 20 20 O 1.20825 * 119.99953 * 335.00203 * 19 2 1 21 21 O 1.34226 * 120.00270 * 155.00050 * 19 2 1 22 22 C 1.50702 * 109.47072 * 119.99997 * 2 1 3 23 23 C 1.38245 * 119.99940 * 239.72854 * 22 2 1 24 24 C 1.38227 * 119.99915 * 179.80578 * 23 22 2 25 25 C 1.38238 * 120.00199 * 0.40102 * 24 23 22 26 26 C 1.38239 * 119.99840 * 359.84988 * 25 24 23 27 27 C 1.38229 * 120.00227 * 59.99815 * 22 2 1 28 28 H 1.09004 * 109.46933 * 59.99978 * 1 2 3 29 29 H 1.08998 * 109.46992 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47401 * 300.00507 * 1 2 3 31 31 H 1.00898 * 111.00484 * 176.04611 * 3 2 1 32 32 H 1.08994 * 109.47076 * 300.00212 * 4 3 2 33 33 H 1.09004 * 109.46857 * 60.00366 * 4 3 2 34 34 H 1.07996 * 119.87653 * 359.97175 * 6 5 4 35 35 H 1.08003 * 120.12565 * 180.27913 * 7 6 5 36 36 H 0.97003 * 120.00559 * 180.02562 * 12 11 9 37 37 H 1.07999 * 120.12544 * 179.97438 * 17 8 7 38 38 H 1.07999 * 119.87177 * 180.02562 * 18 17 8 39 39 H 0.96700 * 116.99991 * 179.97438 * 21 19 2 40 40 H 1.08005 * 119.99538 * 359.97438 * 23 22 2 41 41 H 1.07996 * 120.00000 * 180.22872 * 24 23 22 42 42 H 1.08003 * 120.00005 * 179.83339 * 25 24 23 43 43 H 1.07998 * 119.99906 * 179.97438 * 26 25 24 44 44 H 1.08001 * 119.99780 * 359.97438 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5487 2.1099 -1.1878 5 6 2.0694 3.5237 -1.1527 6 6 1.3214 4.5172 -0.5399 7 6 1.7897 5.8105 -0.4970 8 6 3.0272 6.1250 -1.0885 9 6 3.5152 7.4516 -1.0565 10 1 3.1848 8.1300 -0.2839 11 6 4.4265 7.8855 -2.0258 12 7 4.5645 7.2151 -3.1406 13 14 5.4461 9.4221 -1.7278 14 1 5.1052 9.9926 -0.3999 15 1 6.8891 9.0728 -1.7602 16 1 5.1551 10.4222 -2.7863 17 6 3.7750 5.1095 -1.7127 18 6 3.2902 3.8218 -1.7380 19 6 2.0324 -0.7104 -1.2304 20 8 1.3397 -1.5362 -1.7763 21 8 3.2494 -0.4258 -1.7199 22 6 2.0323 -0.7104 1.2305 23 6 2.8317 -0.0402 2.1376 24 6 3.2892 -0.6906 3.2683 25 6 2.9541 -2.0137 3.4878 26 6 2.1590 -2.6854 2.5780 27 6 1.6984 -2.0338 1.4493 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 3.0262 1.4127 0.0649 32 1 1.9122 1.6106 -2.0859 33 1 0.4588 2.1245 -1.1960 34 1 0.3696 4.2744 -0.0912 35 1 1.2075 6.5821 -0.0153 36 1 5.1964 7.5156 -3.8124 37 1 4.7259 5.3398 -2.1702 38 1 3.8627 3.0407 -2.2161 39 1 3.5282 -0.9075 -2.5106 40 1 3.0965 0.9924 1.9642 41 1 3.9106 -0.1660 3.9788 42 1 3.3138 -2.5227 4.3699 43 1 1.8976 -3.7192 2.7493 44 1 1.0771 -2.5585 0.7386 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604349632.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:52 Heat of formation + Delta-G solvation = -45.129454 kcal Electronic energy + Delta-G solvation = -26837.967631 eV Core-core repulsion = 23105.487767 eV Total energy + Delta-G solvation = -3732.479864 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.01397 -39.12046 -37.81019 -36.38531 -36.17141 -33.88001 -32.10754 -31.03538 -29.90848 -29.25790 -28.81714 -26.56923 -24.92957 -23.48645 -22.48054 -22.26721 -20.99905 -20.02725 -19.76392 -18.07234 -17.44772 -17.30693 -17.04847 -15.90581 -15.46269 -15.10524 -15.07403 -14.56344 -14.30851 -13.98457 -13.78705 -13.63616 -13.44240 -13.32336 -12.78351 -12.54109 -12.41626 -12.25233 -12.03750 -11.94413 -11.82526 -11.58460 -11.43387 -11.28550 -11.10271 -11.08447 -10.93445 -10.61272 -10.52676 -10.37682 -9.58945 -9.40926 -9.14468 -9.01682 -8.90765 -8.39577 -7.46430 -7.32415 -6.78745 -4.36874 1.14701 1.31324 2.11607 2.68968 2.92267 3.05638 3.08335 3.11183 3.15713 3.68871 3.91402 4.16173 4.49134 4.66094 4.79893 4.88725 4.90002 5.05269 5.18119 5.37837 5.49904 5.62204 5.64863 5.70344 5.77490 5.83668 5.85701 5.96764 6.04182 6.26435 6.32799 6.36295 6.39984 6.41289 6.42967 6.47944 6.87398 6.93658 7.05358 7.08873 7.24590 7.36196 7.48520 7.61038 7.80214 7.86971 8.04654 8.12158 8.29118 8.62954 8.88236 8.96412 10.15662 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.018477 B = 0.002811 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.056829 B = 9959.834391 C =10486.103418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.171 3.829 3 N -0.656 5.656 4 C 0.118 3.882 5 C -0.216 4.216 6 C -0.066 4.066 7 C -0.229 4.229 8 C 0.114 3.886 9 C -0.461 4.461 10 H 0.078 0.922 11 C 0.076 3.924 12 N -0.792 5.792 13 Si 0.906 3.094 14 H -0.260 1.260 15 H -0.272 1.272 16 H -0.275 1.275 17 C -0.167 4.167 18 C -0.091 4.091 19 C 0.458 3.542 20 O -0.518 6.518 21 O -0.510 6.510 22 C -0.080 4.080 23 C -0.086 4.086 24 C -0.122 4.122 25 C -0.118 4.118 26 C -0.124 4.124 27 C -0.112 4.112 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.354 0.646 32 H 0.024 0.976 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.280 0.720 37 H 0.117 0.883 38 H 0.084 0.916 39 H 0.406 0.594 40 H 0.141 0.859 41 H 0.125 0.875 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.746 -15.639 7.268 17.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.077 3.923 3 N -0.289 5.289 4 C -0.009 4.009 5 C -0.217 4.217 6 C -0.085 4.085 7 C -0.248 4.248 8 C 0.111 3.889 9 C -0.491 4.491 10 H 0.096 0.904 11 C -0.142 4.142 12 N -0.417 5.417 13 Si 0.731 3.269 14 H -0.184 1.184 15 H -0.197 1.197 16 H -0.200 1.200 17 C -0.186 4.186 18 C -0.110 4.110 19 C 0.298 3.702 20 O -0.405 6.405 21 O -0.321 6.321 22 C -0.080 4.080 23 C -0.104 4.104 24 C -0.140 4.140 25 C -0.136 4.136 26 C -0.142 4.142 27 C -0.130 4.130 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.175 0.825 32 H 0.042 0.958 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.091 0.909 37 H 0.134 0.866 38 H 0.102 0.898 39 H 0.265 0.735 40 H 0.159 0.841 41 H 0.143 0.857 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.448 -15.404 7.621 17.359 hybrid contribution 1.258 -0.055 -1.336 1.836 sum -1.190 -15.459 6.285 16.730 Atomic orbital electron populations 1.21833 0.89772 1.03075 1.03899 1.19846 0.97122 0.88624 0.86721 1.60958 1.17661 1.07749 1.42566 1.20738 0.99118 0.92504 0.88571 1.18750 0.98965 0.92467 1.11542 1.20327 0.97450 0.93020 0.97720 1.20964 0.97790 0.95407 1.10665 1.17641 0.89527 0.93081 0.88658 1.19642 1.21688 0.97004 1.10735 0.90416 1.25917 0.95900 0.98515 0.93862 1.69835 1.29296 1.37904 1.04688 0.86293 0.79809 0.81132 0.79686 1.18368 1.19708 1.20023 1.21272 1.00904 0.91264 1.05176 1.20534 0.95077 0.96144 0.99254 1.25024 0.78705 0.80290 0.86201 1.90665 1.57038 1.32923 1.59869 1.84594 1.34909 1.65570 1.47056 1.19373 0.99315 0.93890 0.95455 1.21207 0.95198 1.00882 0.93152 1.21217 1.00243 0.94802 0.97710 1.21207 0.98221 0.94962 0.99188 1.21055 0.98678 0.99870 0.94587 1.21055 0.99937 0.94022 0.97997 0.91336 0.91126 0.89886 0.82481 0.95771 0.91314 0.89421 0.89100 0.90942 0.86567 0.89773 0.73484 0.84094 0.85705 0.86150 0.86075 0.85931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.60 7.58 37.16 0.28 -1.32 16 2 C 0.17 2.27 0.76 -133.91 -0.10 2.17 16 3 N -0.66 -9.72 4.98 -103.58 -0.52 -10.24 16 4 C 0.12 1.99 5.07 -4.97 -0.03 1.96 16 5 C -0.22 -4.46 5.42 -104.33 -0.56 -5.03 16 6 C -0.07 -1.44 9.67 -39.66 -0.38 -1.82 16 7 C -0.23 -5.50 9.80 -38.87 -0.38 -5.88 16 8 C 0.11 2.97 5.58 -106.82 -0.60 2.37 16 9 C -0.46 -12.07 9.05 -37.74 -0.34 -12.41 16 10 H 0.08 1.97 7.91 -52.49 -0.41 1.55 16 11 C 0.08 1.88 5.14 -17.34 -0.09 1.79 16 12 N -0.79 -20.20 10.95 55.55 0.61 -19.59 16 13 Si 0.91 18.41 29.60 -169.99 -5.03 13.37 16 14 H -0.26 -5.24 7.11 56.52 0.40 -4.83 16 15 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 16 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 17 C -0.17 -4.22 8.70 -38.87 -0.34 -4.56 16 18 C -0.09 -2.04 9.67 -39.66 -0.38 -2.43 16 19 C 0.46 6.40 5.53 36.00 0.20 6.60 16 20 O -0.52 -8.10 16.85 -18.75 -0.32 -8.41 16 21 O -0.51 -6.34 12.23 -39.25 -0.48 -6.82 16 22 C -0.08 -0.99 4.76 -104.62 -0.50 -1.49 16 23 C -0.09 -1.04 9.14 -39.58 -0.36 -1.40 16 24 C -0.12 -1.26 10.05 -39.59 -0.40 -1.66 16 25 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 26 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 27 C -0.11 -1.27 8.82 -39.59 -0.35 -1.62 16 28 H 0.07 0.88 6.40 -51.93 -0.33 0.55 16 29 H 0.07 0.82 7.12 -51.93 -0.37 0.45 16 30 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.35 5.38 7.19 -39.29 -0.28 5.10 16 32 H 0.02 0.41 6.58 -51.93 -0.34 0.07 16 33 H 0.07 1.12 6.24 -51.93 -0.32 0.80 16 34 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 35 H 0.09 2.08 8.06 -52.48 -0.42 1.66 16 36 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 37 H 0.12 3.06 6.16 -52.49 -0.32 2.74 16 38 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 39 H 0.41 3.36 9.10 45.56 0.41 3.78 16 40 H 0.14 1.76 6.40 -52.48 -0.34 1.43 16 41 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.12 0.86 8.06 -52.48 -0.42 0.43 16 43 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 44 H 0.12 1.37 7.58 -52.49 -0.40 0.97 16 LS Contribution 366.20 15.07 5.52 5.52 Total: -1.00 -28.93 366.20 -10.14 -39.07 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: -4.80 Total: 14.98 kcal Atomic # 6 Polarization: -22.75 SS G_CDS: -5.13 Total: -27.88 kcal Atomic # 7 Polarization: -29.92 SS G_CDS: 0.09 Total: -29.83 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.80 Total: -15.24 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.03 Total: 13.37 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.93 -10.14 -39.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604349632.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.059 kcal (2) G-P(sol) polarization free energy of solvation -28.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds