Wall clock time and date at job start Tue Mar 31 2020 14:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46901 * 109.47347 * 2 1 4 4 C 1.46904 * 110.99802 * 299.99704 * 3 2 1 5 5 C 1.50704 * 109.47113 * 179.97438 * 4 3 2 6 6 C 1.38634 * 119.74839 * 269.73165 * 5 4 3 7 7 C 1.37619 * 120.24294 * 179.72398 * 6 5 4 8 8 C 1.40720 * 119.74615 * 0.56381 * 7 6 5 9 9 C 1.41392 * 120.24340 * 179.68137 * 8 7 6 10 10 H 1.07999 * 120.00216 * 24.41557 * 9 8 7 11 11 C 1.39941 * 120.00039 * 204.40587 * 9 8 7 12 12 N 1.30821 * 120.00054 * 17.87073 * 11 9 8 13 13 Si 1.86800 * 120.00114 * 197.87041 * 11 9 8 14 14 H 1.48494 * 109.47296 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47304 * 120.00255 * 13 11 9 16 16 H 1.48501 * 109.47160 * 240.00002 * 13 11 9 17 17 C 1.40714 * 119.50918 * 359.71205 * 8 7 6 18 18 C 1.37622 * 119.74661 * 359.97438 * 17 8 7 19 19 C 1.50697 * 109.47410 * 239.99790 * 2 1 3 20 20 O 1.20825 * 119.99953 * 335.00203 * 19 2 1 21 21 O 1.34226 * 120.00270 * 155.00050 * 19 2 1 22 22 C 1.50702 * 109.47072 * 119.99997 * 2 1 3 23 23 C 1.38245 * 119.99940 * 239.72854 * 22 2 1 24 24 C 1.38227 * 119.99915 * 179.80578 * 23 22 2 25 25 C 1.38238 * 120.00199 * 0.40102 * 24 23 22 26 26 C 1.38239 * 119.99840 * 359.84988 * 25 24 23 27 27 C 1.38229 * 120.00227 * 59.99815 * 22 2 1 28 28 H 1.09004 * 109.46933 * 59.99978 * 1 2 3 29 29 H 1.08998 * 109.46992 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47401 * 300.00507 * 1 2 3 31 31 H 1.00898 * 111.00484 * 176.04611 * 3 2 1 32 32 H 1.08994 * 109.47076 * 300.00212 * 4 3 2 33 33 H 1.09004 * 109.46857 * 60.00366 * 4 3 2 34 34 H 1.07996 * 119.87653 * 359.97175 * 6 5 4 35 35 H 1.08003 * 120.12565 * 180.27913 * 7 6 5 36 36 H 0.97003 * 120.00559 * 180.02562 * 12 11 9 37 37 H 1.07999 * 120.12544 * 179.97438 * 17 8 7 38 38 H 1.07999 * 119.87177 * 180.02562 * 18 17 8 39 39 H 0.96700 * 116.99991 * 179.97438 * 21 19 2 40 40 H 1.08005 * 119.99538 * 359.97438 * 23 22 2 41 41 H 1.07996 * 120.00000 * 180.22872 * 24 23 22 42 42 H 1.08003 * 120.00005 * 179.83339 * 25 24 23 43 43 H 1.07998 * 119.99906 * 179.97438 * 26 25 24 44 44 H 1.08001 * 119.99780 * 359.97438 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5487 2.1099 -1.1878 5 6 2.0694 3.5237 -1.1527 6 6 1.3214 4.5172 -0.5399 7 6 1.7897 5.8105 -0.4970 8 6 3.0272 6.1250 -1.0885 9 6 3.5152 7.4516 -1.0565 10 1 3.1848 8.1300 -0.2839 11 6 4.4265 7.8855 -2.0258 12 7 4.5645 7.2151 -3.1406 13 14 5.4461 9.4221 -1.7278 14 1 5.1052 9.9926 -0.3999 15 1 6.8891 9.0728 -1.7602 16 1 5.1551 10.4222 -2.7863 17 6 3.7750 5.1095 -1.7127 18 6 3.2902 3.8218 -1.7380 19 6 2.0324 -0.7104 -1.2304 20 8 1.3397 -1.5362 -1.7763 21 8 3.2494 -0.4258 -1.7199 22 6 2.0323 -0.7104 1.2305 23 6 2.8317 -0.0402 2.1376 24 6 3.2892 -0.6906 3.2683 25 6 2.9541 -2.0137 3.4878 26 6 2.1590 -2.6854 2.5780 27 6 1.6984 -2.0338 1.4493 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 3.0262 1.4127 0.0649 32 1 1.9122 1.6106 -2.0859 33 1 0.4588 2.1245 -1.1960 34 1 0.3696 4.2744 -0.0912 35 1 1.2075 6.5821 -0.0153 36 1 5.1964 7.5156 -3.8124 37 1 4.7259 5.3398 -2.1702 38 1 3.8627 3.0407 -2.2161 39 1 3.5282 -0.9075 -2.5106 40 1 3.0965 0.9924 1.9642 41 1 3.9106 -0.1660 3.9788 42 1 3.3138 -2.5227 4.3699 43 1 1.8976 -3.7192 2.7493 44 1 1.0771 -2.5585 0.7386 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604349632.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:51 Heat of formation + Delta-G solvation = -60.254561 kcal Electronic energy + Delta-G solvation = -26838.623505 eV Core-core repulsion = 23105.487767 eV Total energy + Delta-G solvation = -3733.135737 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.06396 -40.02045 -39.51832 -37.55654 -37.29429 -35.61910 -33.43760 -31.91579 -31.32575 -31.04089 -29.93586 -28.08422 -26.19695 -24.86231 -23.44886 -23.20268 -22.84162 -21.62342 -20.86322 -19.19644 -19.14024 -18.45132 -18.12158 -17.16325 -16.85235 -16.36000 -16.04075 -15.88353 -15.56067 -15.48390 -15.17797 -14.84232 -14.68663 -14.28586 -14.17556 -13.77313 -13.75894 -13.61408 -13.33311 -13.29193 -13.06755 -12.85961 -12.72465 -12.65365 -12.62115 -12.38701 -12.18749 -12.05540 -11.83748 -11.64086 -11.35818 -11.23216 -10.98047 -9.84783 -9.76493 -9.59675 -9.30691 -9.17576 -8.62554 -6.31056 0.31605 0.49901 0.93903 1.05222 1.20185 1.38992 1.49819 1.54083 1.96130 2.21844 2.68108 2.86894 3.10843 3.51035 3.80227 3.82815 4.03781 4.16185 4.20211 4.25569 4.30857 4.37081 4.57980 4.59048 4.62281 4.67533 4.69619 4.73423 4.87811 5.03935 5.07515 5.12398 5.16938 5.18696 5.40495 5.43309 5.50320 5.53840 5.56676 5.63889 5.74530 5.86419 6.04240 6.09258 6.13777 6.18215 6.33581 6.43017 6.73888 6.83029 6.97386 7.07300 8.34421 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.018477 B = 0.002811 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.056829 B = 9959.834391 C =10486.103418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.173 3.827 3 N -0.652 5.652 4 C 0.126 3.874 5 C -0.199 4.199 6 C -0.068 4.068 7 C -0.243 4.243 8 C 0.081 3.919 9 C -0.500 4.500 10 H 0.073 0.927 11 C 0.035 3.965 12 N -0.825 5.825 13 Si 0.980 3.020 14 H -0.259 1.259 15 H -0.264 1.264 16 H -0.267 1.267 17 C -0.189 4.189 18 C -0.093 4.093 19 C 0.460 3.540 20 O -0.537 6.537 21 O -0.513 6.513 22 C -0.093 4.093 23 C -0.103 4.103 24 C -0.126 4.126 25 C -0.115 4.115 26 C -0.123 4.123 27 C -0.122 4.122 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.352 0.648 32 H 0.025 0.975 33 H 0.081 0.919 34 H 0.115 0.885 35 H 0.094 0.906 36 H 0.287 0.713 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.424 0.576 40 H 0.131 0.869 41 H 0.141 0.859 42 H 0.149 0.851 43 H 0.146 0.854 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.793 -17.216 8.445 19.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.080 3.920 3 N -0.285 5.285 4 C -0.001 4.001 5 C -0.200 4.200 6 C -0.086 4.086 7 C -0.263 4.263 8 C 0.079 3.921 9 C -0.530 4.530 10 H 0.091 0.909 11 C -0.179 4.179 12 N -0.452 5.452 13 Si 0.801 3.199 14 H -0.182 1.182 15 H -0.189 1.189 16 H -0.191 1.191 17 C -0.209 4.209 18 C -0.112 4.112 19 C 0.300 3.700 20 O -0.426 6.426 21 O -0.326 6.326 22 C -0.093 4.093 23 C -0.121 4.121 24 C -0.144 4.144 25 C -0.133 4.133 26 C -0.141 4.141 27 C -0.140 4.140 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.106 0.894 31 H 0.173 0.827 32 H 0.043 0.957 33 H 0.099 0.901 34 H 0.133 0.867 35 H 0.112 0.888 36 H 0.098 0.902 37 H 0.116 0.884 38 H 0.120 0.880 39 H 0.285 0.715 40 H 0.148 0.852 41 H 0.159 0.841 42 H 0.166 0.834 43 H 0.164 0.836 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.494 -16.998 8.794 19.300 hybrid contribution 1.223 0.231 -1.664 2.078 sum -1.271 -16.768 7.130 18.265 Atomic orbital electron populations 1.21846 0.89205 1.03599 1.03853 1.19874 0.97541 0.87431 0.87183 1.60840 1.17547 1.09009 1.41107 1.20607 0.99680 0.90301 0.89561 1.19119 0.97650 0.94404 1.08856 1.20632 0.98488 0.92210 0.97315 1.21160 0.97459 0.96765 1.10918 1.17972 0.90664 0.93621 0.89880 1.19856 1.23920 0.97453 1.11762 0.90880 1.26731 0.96384 1.01713 0.93100 1.69884 1.30095 1.39729 1.05455 0.85194 0.78084 0.77081 0.79560 1.18218 1.18893 1.19140 1.21225 1.00703 0.92519 1.06443 1.20747 0.95882 0.95479 0.99096 1.25097 0.78808 0.79966 0.86092 1.90658 1.57639 1.33868 1.60444 1.84558 1.34251 1.65791 1.48044 1.19336 1.00282 0.94461 0.95257 1.21216 0.96059 1.00678 0.94140 1.21476 1.00113 0.95453 0.97372 1.21560 0.97325 0.94570 0.99848 1.21385 0.97934 1.01000 0.93795 1.21139 1.00371 0.93698 0.98787 0.91816 0.90406 0.89375 0.82701 0.95693 0.90118 0.86686 0.88767 0.90242 0.88411 0.88045 0.71473 0.85154 0.84072 0.83357 0.83646 0.86044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 7.58 71.98 0.55 -2.43 16 2 C 0.17 4.36 0.76 2.03 0.00 4.36 16 3 N -0.65 -18.46 4.98 -481.61 -2.40 -20.86 16 4 C 0.13 4.05 5.07 85.56 0.43 4.48 16 5 C -0.20 -8.05 5.42 -19.67 -0.11 -8.16 16 6 C -0.07 -2.89 9.67 22.22 0.21 -2.68 16 7 C -0.24 -11.90 9.80 22.73 0.22 -11.68 16 8 C 0.08 4.38 5.58 -21.29 -0.12 4.26 16 9 C -0.50 -27.20 9.05 23.46 0.21 -26.99 16 10 H 0.07 3.86 7.91 -2.91 -0.02 3.84 16 11 C 0.04 1.79 5.14 85.26 0.44 2.23 16 12 N -0.83 -43.38 10.95 21.83 0.24 -43.14 16 13 Si 0.98 38.38 29.60 68.60 2.03 40.41 16 14 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 15 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 16 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 17 C -0.19 -9.89 8.70 22.73 0.20 -9.69 16 18 C -0.09 -4.19 9.67 22.22 0.21 -3.97 16 19 C 0.46 12.21 5.53 71.23 0.39 12.61 16 20 O -0.54 -16.11 16.85 21.97 0.37 -15.74 16 21 O -0.51 -12.03 12.23 -51.37 -0.63 -12.66 16 22 C -0.09 -2.18 4.76 -19.86 -0.09 -2.27 16 23 C -0.10 -2.35 9.14 22.27 0.20 -2.15 16 24 C -0.13 -2.36 10.05 22.27 0.22 -2.13 16 25 C -0.12 -1.84 10.05 22.27 0.22 -1.61 16 26 C -0.12 -2.09 10.05 22.27 0.22 -1.86 16 27 C -0.12 -2.55 8.82 22.27 0.20 -2.35 16 28 H 0.06 1.53 6.40 -2.38 -0.02 1.51 16 29 H 0.08 1.69 7.12 -2.39 -0.02 1.68 16 30 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.35 10.36 7.19 -89.70 -0.64 9.71 16 32 H 0.02 0.81 6.58 -2.39 -0.02 0.79 16 33 H 0.08 2.45 6.24 -2.38 -0.01 2.43 16 34 H 0.12 4.23 8.06 -2.91 -0.02 4.21 16 35 H 0.09 4.41 8.06 -2.91 -0.02 4.38 16 36 H 0.29 13.59 8.30 -92.71 -0.77 12.82 16 37 H 0.10 5.39 6.16 -2.91 -0.02 5.37 16 38 H 0.10 4.12 8.06 -2.91 -0.02 4.10 16 39 H 0.42 6.37 9.10 -74.06 -0.67 5.70 16 40 H 0.13 3.19 6.40 -2.91 -0.02 3.17 16 41 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 42 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 43 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 44 H 0.12 2.53 7.58 -2.91 -0.02 2.51 16 Total: -1.00 -63.37 366.20 2.97 -60.40 By element: Atomic # 1 Polarization: 41.90 SS G_CDS: -0.27 Total: 41.63 kcal Atomic # 6 Polarization: -53.67 SS G_CDS: 3.63 Total: -50.04 kcal Atomic # 7 Polarization: -61.84 SS G_CDS: -2.16 Total: -64.00 kcal Atomic # 8 Polarization: -28.15 SS G_CDS: -0.26 Total: -28.40 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 2.03 Total: 40.41 kcal Total: -63.37 2.97 -60.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604349632.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.143 kcal (2) G-P(sol) polarization free energy of solvation -63.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds