Wall clock time and date at job start Tue Mar 31 2020 14:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46900 * 109.47119 * 2 1 4 4 C 1.46895 * 111.00076 * 60.00148 * 3 2 1 5 5 C 1.50701 * 109.47121 * 179.97438 * 4 3 2 6 6 C 1.38640 * 119.75043 * 269.72653 * 5 4 3 7 7 C 1.37621 * 120.24722 * 179.72272 * 6 5 4 8 8 C 1.40712 * 119.74364 * 0.57217 * 7 6 5 9 9 C 1.41398 * 120.24361 * 179.68076 * 8 7 6 10 10 H 1.07998 * 119.99806 * 204.39747 * 9 8 7 11 11 C 1.39940 * 119.99694 * 24.40406 * 9 8 7 12 12 N 1.30825 * 120.00313 * 17.85593 * 11 9 8 13 13 Si 1.86806 * 120.00003 * 197.85535 * 11 9 8 14 14 H 1.48498 * 109.46748 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.46825 * 120.00075 * 13 11 9 16 16 H 1.48495 * 109.47170 * 240.00392 * 13 11 9 17 17 C 1.40713 * 119.51383 * 359.70517 * 8 7 6 18 18 C 1.37618 * 119.74542 * 359.97438 * 17 8 7 19 19 C 1.50696 * 109.47189 * 120.00263 * 2 1 3 20 20 O 1.20815 * 120.00084 * 25.00050 * 19 2 1 21 21 O 1.34237 * 119.99832 * 204.99639 * 19 2 1 22 22 C 1.50700 * 109.46869 * 240.00498 * 2 1 3 23 23 C 1.38239 * 119.99928 * 299.99705 * 22 2 1 24 24 C 1.38234 * 120.00425 * 180.02562 * 23 22 2 25 25 C 1.38238 * 119.99786 * 359.96092 * 24 23 22 26 26 C 1.38238 * 119.99672 * 0.27102 * 25 24 23 27 27 C 1.38232 * 120.00273 * 359.54024 * 26 25 24 28 28 H 1.08999 * 109.47197 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46613 * 299.99985 * 1 2 3 30 30 H 1.09008 * 109.47027 * 59.99507 * 1 2 3 31 31 H 1.00906 * 110.99912 * 183.96028 * 3 2 1 32 32 H 1.08995 * 109.47127 * 300.00352 * 4 3 2 33 33 H 1.09003 * 109.46866 * 60.00150 * 4 3 2 34 34 H 1.08002 * 119.87439 * 359.97438 * 6 5 4 35 35 H 1.07998 * 120.12673 * 180.28007 * 7 6 5 36 36 H 0.96997 * 120.00246 * 179.97438 * 12 11 9 37 37 H 1.07999 * 120.13096 * 179.97438 * 17 8 7 38 38 H 1.07995 * 119.87852 * 179.97438 * 18 17 8 39 39 H 0.96701 * 116.99657 * 180.02562 * 21 19 2 40 40 H 1.08001 * 119.99449 * 0.02562 * 23 22 2 41 41 H 1.07999 * 120.00360 * 179.97438 * 24 23 22 42 42 H 1.07997 * 119.99916 * 180.02562 * 25 24 23 43 43 H 1.08004 * 119.99485 * 179.72506 * 26 25 24 44 44 H 1.08005 * 120.00185 * 180.20948 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5487 2.1099 1.1877 5 6 2.0704 3.5233 1.1531 6 6 3.2884 3.8217 1.7443 7 6 3.7771 5.1079 1.7139 8 6 3.0299 6.1240 1.0901 9 6 3.5188 7.4504 1.0586 10 1 2.8315 8.2770 0.9550 11 6 4.8934 7.6920 1.1614 12 7 5.7460 6.7254 0.9374 13 14 5.5108 9.3948 1.6186 14 1 4.3536 10.3034 1.8193 15 1 6.3001 9.3145 2.8739 16 1 6.3694 9.9197 0.5266 17 6 1.7923 5.8107 0.4984 18 6 1.3262 4.5164 0.5351 19 6 2.0324 -0.7104 1.2304 20 8 1.3397 -1.5362 1.7762 21 8 3.2495 -0.4258 1.7198 22 6 2.0323 -0.7103 -1.2305 23 6 1.6983 -2.0338 -1.4494 24 6 2.1594 -2.6856 -2.5778 25 6 2.9539 -2.0137 -3.4879 26 6 3.2918 -0.6916 -3.2667 27 6 2.8275 -0.0387 -2.1402 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.0263 1.4126 -0.0651 32 1 0.4589 2.1245 1.1960 33 1 1.9123 1.6106 2.0859 34 1 3.8577 3.0411 2.2270 35 1 4.7283 5.3373 2.1711 36 1 6.6988 6.8930 1.0084 37 1 1.2103 6.5829 0.0174 38 1 0.3764 4.2735 0.0820 39 1 3.5283 -0.9075 2.5106 40 1 1.0771 -2.5585 -0.7386 41 1 1.8989 -3.7197 -2.7485 42 1 3.3138 -2.5228 -4.3698 43 1 3.9162 -0.1680 -3.9755 44 1 3.0887 0.9952 -1.9691 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604349635.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:56 Heat of formation + Delta-G solvation = -45.044481 kcal Electronic energy + Delta-G solvation = -26885.980767 eV Core-core repulsion = 23153.504589 eV Total energy + Delta-G solvation = -3732.476179 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.00000 -39.09914 -37.80573 -36.37241 -36.16173 -33.87562 -32.09403 -31.00745 -29.89639 -29.25662 -28.80206 -26.56205 -24.91908 -23.47557 -22.45797 -22.24601 -20.99756 -20.01714 -19.75438 -18.06245 -17.42474 -17.30555 -17.03162 -15.88709 -15.45008 -15.09412 -15.05778 -14.54564 -14.29928 -13.97784 -13.77324 -13.62614 -13.42960 -13.30671 -12.76138 -12.53614 -12.40526 -12.23188 -12.04509 -11.94448 -11.72245 -11.57507 -11.54000 -11.26475 -11.09167 -11.04076 -10.93064 -10.66984 -10.50076 -10.31977 -9.59018 -9.40703 -9.16040 -8.98777 -8.88037 -8.37178 -7.46448 -7.32031 -6.78433 -4.36783 1.17286 1.34166 2.12546 2.69274 2.93422 3.05657 3.08352 3.11113 3.15813 3.71574 3.91417 4.17660 4.50700 4.67195 4.81941 4.90671 4.92770 5.08107 5.19405 5.40509 5.52254 5.63329 5.65700 5.71308 5.77412 5.84335 5.88081 5.99585 6.04685 6.26356 6.35098 6.35980 6.40049 6.42300 6.45929 6.50677 6.90330 6.93952 7.05846 7.10695 7.24928 7.36330 7.50115 7.61250 7.81161 7.87151 8.04630 8.12280 8.29213 8.63023 8.88314 8.96457 10.15823 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017658 B = 0.002887 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.312998 B = 9695.010083 C =10248.974366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.171 3.829 3 N -0.656 5.656 4 C 0.118 3.882 5 C -0.216 4.216 6 C -0.091 4.091 7 C -0.167 4.167 8 C 0.113 3.887 9 C -0.461 4.461 10 H 0.077 0.923 11 C 0.076 3.924 12 N -0.791 5.791 13 Si 0.906 3.094 14 H -0.260 1.260 15 H -0.272 1.272 16 H -0.275 1.275 17 C -0.229 4.229 18 C -0.066 4.066 19 C 0.458 3.542 20 O -0.518 6.518 21 O -0.510 6.510 22 C -0.080 4.080 23 C -0.112 4.112 24 C -0.124 4.124 25 C -0.118 4.118 26 C -0.121 4.121 27 C -0.086 4.086 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.355 0.645 32 H 0.068 0.932 33 H 0.024 0.976 34 H 0.084 0.916 35 H 0.117 0.883 36 H 0.280 0.720 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.406 0.594 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.125 0.875 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.402 -14.926 -4.151 15.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.077 3.923 3 N -0.290 5.290 4 C -0.009 4.009 5 C -0.218 4.218 6 C -0.110 4.110 7 C -0.186 4.186 8 C 0.111 3.889 9 C -0.491 4.491 10 H 0.096 0.904 11 C -0.142 4.142 12 N -0.416 5.416 13 Si 0.730 3.270 14 H -0.184 1.184 15 H -0.197 1.197 16 H -0.200 1.200 17 C -0.248 4.248 18 C -0.085 4.085 19 C 0.298 3.702 20 O -0.405 6.405 21 O -0.321 6.321 22 C -0.081 4.081 23 C -0.130 4.130 24 C -0.142 4.142 25 C -0.136 4.136 26 C -0.139 4.139 27 C -0.104 4.104 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.176 0.824 32 H 0.087 0.913 33 H 0.042 0.958 34 H 0.102 0.898 35 H 0.134 0.866 36 H 0.091 0.909 37 H 0.109 0.891 38 H 0.106 0.894 39 H 0.265 0.735 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.143 0.857 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.966 -14.746 -4.757 15.994 hybrid contribution 1.226 -0.035 1.398 1.860 sum -2.740 -14.781 -3.359 15.404 Atomic orbital electron populations 1.21833 0.89796 1.03055 1.03867 1.19848 0.97095 0.88648 0.86734 1.60953 1.17789 1.07714 1.42503 1.20738 0.99057 0.92492 0.88602 1.18763 0.98634 0.92473 1.11888 1.20538 0.94694 0.96213 0.99582 1.21268 1.01466 0.92225 1.03644 1.17638 0.90520 0.93225 0.87538 1.19643 0.91948 0.93310 1.44179 0.90437 1.25911 0.97022 0.98905 0.92347 1.69835 1.03603 1.33851 1.34297 0.86298 0.79391 0.82342 0.78926 1.18402 1.19732 1.19992 1.20966 1.00249 0.95255 1.08360 1.20327 0.97424 0.93056 0.97704 1.25033 0.78692 0.80274 0.86192 1.90660 1.57060 1.32933 1.59893 1.84607 1.34903 1.65539 1.47035 1.19369 0.99404 0.93882 0.95427 1.21050 0.99947 0.94030 0.98009 1.21049 0.98744 0.99838 0.94598 1.21206 0.98215 0.94980 0.99167 1.21228 1.00148 0.94798 0.97772 1.21219 0.95113 1.00917 0.93132 0.91135 0.91373 0.89889 0.82358 0.91334 0.95831 0.89778 0.86562 0.90947 0.89106 0.89425 0.73528 0.85953 0.86090 0.86154 0.85680 0.84047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 7.58 37.16 0.28 -1.33 16 2 C 0.17 2.31 0.76 -133.91 -0.10 2.20 16 3 N -0.66 -9.98 4.97 -103.59 -0.52 -10.49 16 4 C 0.12 1.99 5.07 -4.98 -0.03 1.97 16 5 C -0.22 -4.47 5.41 -104.33 -0.56 -5.03 16 6 C -0.09 -2.04 9.67 -39.66 -0.38 -2.43 16 7 C -0.17 -4.21 8.70 -38.87 -0.34 -4.55 16 8 C 0.11 2.96 5.57 -106.83 -0.60 2.37 16 9 C -0.46 -12.07 9.05 -37.74 -0.34 -12.41 16 10 H 0.08 1.96 7.91 -52.49 -0.42 1.55 16 11 C 0.08 1.88 5.14 -17.34 -0.09 1.79 16 12 N -0.79 -20.06 10.95 55.55 0.61 -19.46 16 13 Si 0.91 18.39 29.60 -169.99 -5.03 13.36 16 14 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 15 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 16 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 17 C -0.23 -5.50 9.80 -38.87 -0.38 -5.88 16 18 C -0.07 -1.44 9.67 -39.66 -0.38 -1.82 16 19 C 0.46 6.46 5.53 36.00 0.20 6.66 16 20 O -0.52 -8.12 16.85 -18.74 -0.32 -8.43 16 21 O -0.51 -6.43 12.23 -39.28 -0.48 -6.91 16 22 C -0.08 -1.03 4.76 -104.62 -0.50 -1.53 16 23 C -0.11 -1.31 8.82 -39.58 -0.35 -1.66 16 24 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 25 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 26 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 27 C -0.09 -1.08 9.14 -39.58 -0.36 -1.44 16 28 H 0.07 0.82 7.12 -51.93 -0.37 0.46 16 29 H 0.07 0.87 6.40 -51.93 -0.33 0.54 16 30 H 0.08 1.00 8.14 -51.92 -0.42 0.58 16 31 H 0.36 5.63 7.20 -39.29 -0.28 5.35 16 32 H 0.07 1.11 6.24 -51.93 -0.32 0.78 16 33 H 0.02 0.40 6.57 -51.93 -0.34 0.06 16 34 H 0.08 1.73 8.06 -52.49 -0.42 1.30 16 35 H 0.12 3.06 6.16 -52.49 -0.32 2.73 16 36 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 37 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 38 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 39 H 0.41 3.39 9.10 45.56 0.41 3.81 16 40 H 0.12 1.39 7.58 -52.49 -0.40 0.99 16 41 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 43 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 44 H 0.14 1.88 6.41 -52.48 -0.34 1.55 16 LS Contribution 366.21 15.07 5.52 5.52 Total: -1.00 -28.82 366.21 -10.14 -38.96 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -4.80 Total: 15.49 kcal Atomic # 6 Polarization: -22.92 SS G_CDS: -5.13 Total: -28.04 kcal Atomic # 7 Polarization: -30.04 SS G_CDS: 0.09 Total: -29.95 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.80 Total: -15.34 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.36 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.82 -10.14 -38.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604349635.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.084 kcal (2) G-P(sol) polarization free energy of solvation -28.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds