Wall clock time and date at job start Tue Mar 31 2020 14:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46900 * 109.47119 * 2 1 4 4 C 1.46895 * 111.00076 * 60.00148 * 3 2 1 5 5 C 1.50701 * 109.47121 * 179.97438 * 4 3 2 6 6 C 1.38640 * 119.75043 * 269.72653 * 5 4 3 7 7 C 1.37621 * 120.24722 * 179.72272 * 6 5 4 8 8 C 1.40712 * 119.74364 * 0.57217 * 7 6 5 9 9 C 1.41398 * 120.24361 * 179.68076 * 8 7 6 10 10 H 1.07998 * 119.99806 * 204.39747 * 9 8 7 11 11 C 1.39940 * 119.99694 * 24.40406 * 9 8 7 12 12 N 1.30825 * 120.00313 * 17.85593 * 11 9 8 13 13 Si 1.86806 * 120.00003 * 197.85535 * 11 9 8 14 14 H 1.48498 * 109.46748 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.46825 * 120.00075 * 13 11 9 16 16 H 1.48495 * 109.47170 * 240.00392 * 13 11 9 17 17 C 1.40713 * 119.51383 * 359.70517 * 8 7 6 18 18 C 1.37618 * 119.74542 * 359.97438 * 17 8 7 19 19 C 1.50696 * 109.47189 * 120.00263 * 2 1 3 20 20 O 1.20815 * 120.00084 * 25.00050 * 19 2 1 21 21 O 1.34237 * 119.99832 * 204.99639 * 19 2 1 22 22 C 1.50700 * 109.46869 * 240.00498 * 2 1 3 23 23 C 1.38239 * 119.99928 * 299.99705 * 22 2 1 24 24 C 1.38234 * 120.00425 * 180.02562 * 23 22 2 25 25 C 1.38238 * 119.99786 * 359.96092 * 24 23 22 26 26 C 1.38238 * 119.99672 * 0.27102 * 25 24 23 27 27 C 1.38232 * 120.00273 * 359.54024 * 26 25 24 28 28 H 1.08999 * 109.47197 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46613 * 299.99985 * 1 2 3 30 30 H 1.09008 * 109.47027 * 59.99507 * 1 2 3 31 31 H 1.00906 * 110.99912 * 183.96028 * 3 2 1 32 32 H 1.08995 * 109.47127 * 300.00352 * 4 3 2 33 33 H 1.09003 * 109.46866 * 60.00150 * 4 3 2 34 34 H 1.08002 * 119.87439 * 359.97438 * 6 5 4 35 35 H 1.07998 * 120.12673 * 180.28007 * 7 6 5 36 36 H 0.96997 * 120.00246 * 179.97438 * 12 11 9 37 37 H 1.07999 * 120.13096 * 179.97438 * 17 8 7 38 38 H 1.07995 * 119.87852 * 179.97438 * 18 17 8 39 39 H 0.96701 * 116.99657 * 180.02562 * 21 19 2 40 40 H 1.08001 * 119.99449 * 0.02562 * 23 22 2 41 41 H 1.07999 * 120.00360 * 179.97438 * 24 23 22 42 42 H 1.07997 * 119.99916 * 180.02562 * 25 24 23 43 43 H 1.08004 * 119.99485 * 179.72506 * 26 25 24 44 44 H 1.08005 * 120.00185 * 180.20948 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5487 2.1099 1.1877 5 6 2.0704 3.5233 1.1531 6 6 3.2884 3.8217 1.7443 7 6 3.7771 5.1079 1.7139 8 6 3.0299 6.1240 1.0901 9 6 3.5188 7.4504 1.0586 10 1 2.8315 8.2770 0.9550 11 6 4.8934 7.6920 1.1614 12 7 5.7460 6.7254 0.9374 13 14 5.5108 9.3948 1.6186 14 1 4.3536 10.3034 1.8193 15 1 6.3001 9.3145 2.8739 16 1 6.3694 9.9197 0.5266 17 6 1.7923 5.8107 0.4984 18 6 1.3262 4.5164 0.5351 19 6 2.0324 -0.7104 1.2304 20 8 1.3397 -1.5362 1.7762 21 8 3.2495 -0.4258 1.7198 22 6 2.0323 -0.7103 -1.2305 23 6 1.6983 -2.0338 -1.4494 24 6 2.1594 -2.6856 -2.5778 25 6 2.9539 -2.0137 -3.4879 26 6 3.2918 -0.6916 -3.2667 27 6 2.8275 -0.0387 -2.1402 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.0263 1.4126 -0.0651 32 1 0.4589 2.1245 1.1960 33 1 1.9123 1.6106 2.0859 34 1 3.8577 3.0411 2.2270 35 1 4.7283 5.3373 2.1711 36 1 6.6988 6.8930 1.0084 37 1 1.2103 6.5829 0.0174 38 1 0.3764 4.2735 0.0820 39 1 3.5283 -0.9075 2.5106 40 1 1.0771 -2.5585 -0.7386 41 1 1.8989 -3.7197 -2.7485 42 1 3.3138 -2.5228 -4.3698 43 1 3.9162 -0.1680 -3.9755 44 1 3.0887 0.9952 -1.9691 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604349635.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:55 Heat of formation + Delta-G solvation = -60.059223 kcal Electronic energy + Delta-G solvation = -26886.631855 eV Core-core repulsion = 23153.504589 eV Total energy + Delta-G solvation = -3733.127267 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.06391 -40.02456 -39.51630 -37.55618 -37.29343 -35.61560 -33.43669 -31.92001 -31.32762 -31.03997 -29.93440 -28.08128 -26.19542 -24.85940 -23.45195 -23.20929 -22.83939 -21.62145 -20.86287 -19.19524 -19.13907 -18.45185 -18.11863 -17.15781 -16.85270 -16.36699 -16.04298 -15.87929 -15.56262 -15.48857 -15.17082 -14.84454 -14.68517 -14.27309 -14.19398 -13.79699 -13.76430 -13.55637 -13.34737 -13.28988 -12.98715 -12.93483 -12.81274 -12.65302 -12.58092 -12.35501 -12.20741 -12.02194 -11.85648 -11.62586 -11.35783 -11.23055 -10.99250 -9.85222 -9.76860 -9.59167 -9.30681 -9.17091 -8.61942 -6.30778 0.31043 0.49124 0.94145 1.05171 1.20281 1.38976 1.49723 1.53871 1.96242 2.21885 2.67818 2.86300 3.11987 3.50722 3.80286 3.83159 4.03381 4.15562 4.20240 4.25771 4.30447 4.37157 4.57643 4.59257 4.61957 4.67254 4.69605 4.73179 4.87528 5.03460 5.07605 5.12432 5.16223 5.18959 5.40654 5.43282 5.50524 5.53489 5.56190 5.63222 5.74592 5.87281 6.04447 6.08731 6.13826 6.17409 6.33385 6.43222 6.74067 6.83403 6.97585 7.07444 8.34808 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017658 B = 0.002887 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.312998 B = 9695.010083 C =10248.974366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.173 3.827 3 N -0.655 5.655 4 C 0.126 3.874 5 C -0.199 4.199 6 C -0.093 4.093 7 C -0.189 4.189 8 C 0.081 3.919 9 C -0.501 4.501 10 H 0.072 0.928 11 C 0.036 3.964 12 N -0.823 5.823 13 Si 0.979 3.021 14 H -0.260 1.260 15 H -0.265 1.265 16 H -0.266 1.266 17 C -0.244 4.244 18 C -0.068 4.068 19 C 0.460 3.540 20 O -0.536 6.536 21 O -0.513 6.513 22 C -0.093 4.093 23 C -0.121 4.121 24 C -0.123 4.123 25 C -0.115 4.115 26 C -0.127 4.127 27 C -0.104 4.104 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.086 0.914 31 H 0.351 0.649 32 H 0.082 0.918 33 H 0.027 0.973 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.287 0.713 37 H 0.094 0.906 38 H 0.115 0.885 39 H 0.424 0.576 40 H 0.123 0.877 41 H 0.147 0.853 42 H 0.149 0.851 43 H 0.140 0.860 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.706 -16.545 -4.892 17.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.079 3.921 3 N -0.287 5.287 4 C -0.001 4.001 5 C -0.201 4.201 6 C -0.112 4.112 7 C -0.209 4.209 8 C 0.079 3.921 9 C -0.530 4.530 10 H 0.091 0.909 11 C -0.179 4.179 12 N -0.449 5.449 13 Si 0.800 3.200 14 H -0.183 1.183 15 H -0.189 1.189 16 H -0.190 1.190 17 C -0.264 4.264 18 C -0.086 4.086 19 C 0.301 3.699 20 O -0.425 6.425 21 O -0.327 6.327 22 C -0.093 4.093 23 C -0.139 4.139 24 C -0.140 4.140 25 C -0.133 4.133 26 C -0.145 4.145 27 C -0.122 4.122 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.172 0.828 32 H 0.100 0.900 33 H 0.045 0.955 34 H 0.120 0.880 35 H 0.116 0.884 36 H 0.098 0.902 37 H 0.112 0.888 38 H 0.133 0.867 39 H 0.285 0.715 40 H 0.141 0.859 41 H 0.165 0.835 42 H 0.167 0.833 43 H 0.157 0.843 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.271 -16.384 -5.494 17.800 hybrid contribution 1.279 0.265 1.581 2.051 sum -2.992 -16.119 -3.912 16.854 Atomic orbital electron populations 1.21846 0.89096 1.03635 1.03871 1.19879 0.97598 0.87404 0.87185 1.60841 1.17514 1.09104 1.41287 1.20624 0.99721 0.90256 0.89542 1.19133 0.97338 0.94414 1.09196 1.20753 0.95469 0.95536 0.99454 1.21220 1.01275 0.93515 1.04886 1.17968 0.91734 0.93801 0.88632 1.19855 0.93032 0.93446 1.46716 0.90934 1.26715 0.96625 1.02940 0.91613 1.69882 1.04152 1.35903 1.34947 0.85205 0.78694 0.77222 0.78862 1.18329 1.18946 1.19040 1.21159 0.99957 0.96601 1.08633 1.20632 0.98469 0.92226 0.97300 1.25066 0.78801 0.79962 0.86056 1.90653 1.57622 1.33803 1.60422 1.84571 1.34266 1.65786 1.48054 1.19344 1.00270 0.94491 0.95233 1.21147 1.00332 0.93642 0.98803 1.21392 0.97893 1.01008 0.93756 1.21555 0.97348 0.94499 0.99871 1.21472 1.00090 0.95534 0.97430 1.21203 0.96156 1.00596 0.94235 0.90348 0.91670 0.89470 0.82828 0.89956 0.95533 0.88048 0.88397 0.90230 0.88799 0.86703 0.71466 0.85891 0.83524 0.83336 0.84259 0.85422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 7.58 71.98 0.55 -2.43 16 2 C 0.17 4.44 0.76 2.03 0.00 4.44 16 3 N -0.65 -19.11 4.97 -481.64 -2.40 -21.50 16 4 C 0.13 4.04 5.07 85.56 0.43 4.48 16 5 C -0.20 -8.07 5.41 -19.67 -0.11 -8.18 16 6 C -0.09 -4.19 9.67 22.22 0.21 -3.98 16 7 C -0.19 -9.90 8.70 22.73 0.20 -9.70 16 8 C 0.08 4.38 5.57 -21.29 -0.12 4.26 16 9 C -0.50 -27.25 9.05 23.46 0.21 -27.03 16 10 H 0.07 3.84 7.91 -2.91 -0.02 3.82 16 11 C 0.04 1.82 5.14 85.26 0.44 2.26 16 12 N -0.82 -43.03 10.95 21.83 0.24 -42.79 16 13 Si 0.98 38.38 29.60 68.60 2.03 40.41 16 14 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 15 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 16 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 17 C -0.24 -11.94 9.80 22.73 0.22 -11.72 16 18 C -0.07 -2.88 9.67 22.22 0.21 -2.67 16 19 C 0.46 12.30 5.53 71.23 0.39 12.70 16 20 O -0.54 -16.00 16.85 22.00 0.37 -15.63 16 21 O -0.51 -12.20 12.23 -51.48 -0.63 -12.83 16 22 C -0.09 -2.25 4.76 -19.87 -0.09 -2.35 16 23 C -0.12 -2.59 8.82 22.27 0.20 -2.40 16 24 C -0.12 -2.14 10.05 22.27 0.22 -1.92 16 25 C -0.11 -1.93 10.05 22.27 0.22 -1.71 16 26 C -0.13 -2.55 10.05 22.27 0.22 -2.33 16 27 C -0.10 -2.52 9.14 22.27 0.20 -2.32 16 28 H 0.08 1.70 7.12 -2.39 -0.02 1.69 16 29 H 0.06 1.54 6.40 -2.39 -0.02 1.53 16 30 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 31 H 0.35 10.89 7.20 -89.69 -0.65 10.24 16 32 H 0.08 2.46 6.24 -2.39 -0.01 2.44 16 33 H 0.03 0.85 6.57 -2.39 -0.02 0.83 16 34 H 0.10 4.12 8.06 -2.91 -0.02 4.10 16 35 H 0.10 5.39 6.16 -2.91 -0.02 5.38 16 36 H 0.29 13.52 8.30 -92.71 -0.77 12.76 16 37 H 0.09 4.40 8.06 -2.91 -0.02 4.38 16 38 H 0.11 4.23 8.06 -2.91 -0.02 4.21 16 39 H 0.42 6.40 9.10 -74.06 -0.67 5.73 16 40 H 0.12 2.58 7.58 -2.91 -0.02 2.56 16 41 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 42 H 0.15 1.64 8.06 -2.91 -0.02 1.61 16 43 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 44 H 0.13 3.39 6.41 -2.91 -0.02 3.37 16 Total: -1.00 -63.15 366.21 2.97 -60.18 By element: Atomic # 1 Polarization: 43.05 SS G_CDS: -0.27 Total: 42.77 kcal Atomic # 6 Polarization: -54.23 SS G_CDS: 3.63 Total: -50.60 kcal Atomic # 7 Polarization: -62.14 SS G_CDS: -2.16 Total: -64.29 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -0.26 Total: -28.46 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 2.03 Total: 40.41 kcal Total: -63.15 2.97 -60.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604349635.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.118 kcal (2) G-P(sol) polarization free energy of solvation -63.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds