Wall clock time and date at job start Tue Mar 31 2020 14:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 S 1.70622 * 124.51898 * 2 1 4 4 C 1.75825 * 91.56375 * 179.97438 * 3 2 1 5 5 C 1.46395 * 125.46578 * 179.97438 * 4 3 2 6 6 O 1.21626 * 120.00276 * 180.02562 * 5 4 3 7 7 O 1.34899 * 119.99397 * 0.02562 * 5 4 3 8 8 C 1.36760 * 109.07729 * 359.75963 * 4 3 2 9 9 C 1.33852 * 124.51769 * 179.97438 * 2 1 3 10 10 C 1.50697 * 122.44881 * 359.97438 * 9 2 1 11 11 N 1.46905 * 109.47074 * 79.49007 * 10 9 2 12 12 C 1.46899 * 111.00067 * 61.21275 * 11 10 9 13 13 C 1.50699 * 109.47132 * 190.00051 * 12 11 10 14 14 H 1.08005 * 119.99758 * 359.97438 * 13 12 11 15 15 C 1.37870 * 120.00043 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00172 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00275 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47097 * 89.99455 * 17 15 13 19 19 H 1.48502 * 109.47326 * 209.99930 * 17 15 13 20 20 H 1.48503 * 109.46789 * 330.00042 * 17 15 13 21 21 C 1.46902 * 111.00064 * 185.17104 * 11 10 9 22 22 C 1.52996 * 109.47467 * 83.07598 * 21 11 10 23 23 C 1.53010 * 109.47005 * 52.60075 * 22 21 11 24 24 C 1.52992 * 109.47417 * 172.60305 * 22 21 11 25 25 C 1.53005 * 109.47270 * 292.60496 * 22 21 11 26 26 H 1.08998 * 109.47196 * 272.35083 * 1 2 3 27 27 H 1.09004 * 109.47090 * 32.34665 * 1 2 3 28 28 H 1.08996 * 109.47302 * 152.34928 * 1 2 3 29 29 H 0.96699 * 116.99695 * 180.02562 * 7 5 4 30 30 H 1.08000 * 123.36029 * 180.23885 * 8 4 3 31 31 H 1.08993 * 109.47876 * 199.48982 * 10 9 2 32 32 H 1.09002 * 109.46787 * 319.49151 * 10 9 2 33 33 H 1.08997 * 109.47103 * 310.00365 * 12 11 10 34 34 H 1.08993 * 109.46827 * 70.00222 * 12 11 10 35 35 H 0.96997 * 120.00500 * 180.02562 * 16 15 13 36 36 H 1.08994 * 109.47081 * 203.07730 * 21 11 10 37 37 H 1.08999 * 109.47129 * 323.07823 * 21 11 10 38 38 H 1.08998 * 109.46743 * 66.61853 * 23 22 21 39 39 H 1.08997 * 109.46956 * 186.61665 * 23 22 21 40 40 H 1.08994 * 109.47102 * 306.61490 * 23 22 21 41 41 H 1.08998 * 109.47067 * 64.89137 * 24 22 21 42 42 H 1.08999 * 109.47317 * 184.88520 * 24 22 21 43 43 H 1.09001 * 109.47432 * 304.88599 * 24 22 21 44 44 H 1.09006 * 109.47044 * 68.20348 * 25 22 21 45 45 H 1.08998 * 109.47421 * 188.20988 * 25 22 21 46 46 H 1.08999 * 109.46710 * 308.20867 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4739 1.4058 0.0000 4 6 3.9492 0.4494 0.0008 5 6 5.3106 0.9878 0.0006 6 8 6.2635 0.2320 0.0007 7 8 5.5080 2.3222 0.0003 8 6 3.6212 -0.8783 0.0064 9 6 2.2655 -1.1029 0.0005 10 6 1.6759 -2.4897 0.0017 11 7 1.2513 -2.8424 -1.3597 12 6 2.3932 -2.8428 -2.2838 13 6 1.8931 -2.9642 -3.7002 14 1 0.8329 -3.0346 -3.8944 15 6 2.7888 -2.9866 -4.7480 16 7 4.0797 -2.9015 -4.5115 17 14 2.1690 -3.1364 -6.5039 18 1 1.9308 -1.7811 -7.0620 19 1 3.1836 -3.8402 -7.3287 20 1 0.8996 -3.9071 -6.5165 21 6 0.5600 -4.1386 -1.3764 22 6 -0.9075 -3.9389 -0.9925 23 6 -1.5239 -2.8552 -1.8796 24 6 -1.6688 -5.2516 -1.1875 25 6 -0.9975 -3.5101 0.4734 26 1 -0.3633 0.0422 1.0268 27 1 -0.3633 0.8682 -0.5499 28 1 -0.3634 -0.9102 -0.4769 29 1 6.4245 2.6304 -0.0002 30 1 4.3545 -1.6712 0.0118 31 1 2.4252 -3.2029 0.3447 32 1 0.8149 -2.5178 0.6696 33 1 2.9501 -1.9124 -2.1736 34 1 3.0452 -3.6858 -2.0552 35 1 4.7100 -2.9169 -5.2487 36 1 0.6187 -4.5688 -2.3761 37 1 1.0338 -4.8123 -0.6625 38 1 -1.5668 -3.2098 -2.9094 39 1 -2.5315 -2.6297 -1.5306 40 1 -0.9123 -1.9544 -1.8306 41 1 -1.2866 -5.9998 -0.4931 42 1 -2.7296 -5.0881 -0.9975 43 1 -1.5327 -5.6021 -2.2106 44 1 -0.5832 -2.5080 0.5849 45 1 -2.0409 -3.5090 0.7884 46 1 -0.4322 -4.2077 1.0914 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610589170.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:11 Heat of formation + Delta-G solvation = -60.890945 kcal Electronic energy + Delta-G solvation = -26754.824746 eV Core-core repulsion = 23157.105364 eV Total energy + Delta-G solvation = -3597.719382 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.94713 -39.06936 -37.33299 -35.87813 -34.38761 -32.44522 -31.90100 -28.70888 -27.57676 -26.76534 -26.68746 -25.84617 -23.80773 -23.61154 -21.60313 -20.02950 -18.45173 -18.37644 -18.28383 -16.94995 -16.37196 -15.86397 -15.50895 -14.85451 -14.73648 -14.64103 -14.24456 -13.95285 -13.69487 -13.28926 -13.19149 -12.74406 -12.61368 -12.56346 -12.19447 -11.99637 -11.94830 -11.78179 -11.62295 -11.46075 -11.40354 -11.28504 -11.04295 -10.87814 -10.66709 -10.61191 -10.54347 -10.45043 -10.17717 -10.09631 -9.92424 -9.54298 -9.13908 -8.42802 -8.36835 -8.10691 -7.20866 -5.98145 -3.98986 0.65268 1.70558 2.14558 2.46856 3.10510 3.23447 3.32836 3.39388 3.41665 4.45012 4.93473 5.04875 5.24025 5.27843 5.35098 5.37136 5.42584 5.45970 5.54096 5.68154 5.72389 5.86169 5.87524 5.94423 5.99883 6.03700 6.07476 6.15714 6.19333 6.26484 6.34604 6.40918 6.47390 6.50471 6.58462 6.60357 6.70607 6.75720 6.90676 7.10224 7.36047 7.39629 7.84053 7.98951 8.13720 8.23568 8.57515 9.08702 9.64444 11.12305 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009160 B = 0.005519 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3055.925517 B = 5071.961772 C = 7110.081112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.162 4.162 3 S 0.211 5.789 4 C -0.279 4.279 5 C 0.561 3.439 6 O -0.509 6.509 7 O -0.517 6.517 8 C -0.008 4.008 9 C -0.108 4.108 10 C 0.089 3.911 11 N -0.523 5.523 12 C 0.192 3.808 13 C -0.504 4.504 14 H 0.064 0.936 15 C 0.056 3.944 16 N -0.895 5.895 17 Si 0.892 3.108 18 H -0.282 1.282 19 H -0.289 1.289 20 H -0.274 1.274 21 C 0.069 3.931 22 C -0.063 4.063 23 C -0.131 4.131 24 C -0.140 4.140 25 C -0.152 4.152 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.105 0.895 29 H 0.413 0.587 30 H 0.150 0.850 31 H 0.029 0.971 32 H 0.094 0.906 33 H 0.036 0.964 34 H -0.013 1.013 35 H 0.260 0.740 36 H 0.087 0.913 37 H 0.020 0.980 38 H 0.049 0.951 39 H 0.033 0.967 40 H 0.079 0.921 41 H 0.047 0.953 42 H 0.048 0.952 43 H 0.055 0.945 44 H 0.073 0.927 45 H 0.045 0.955 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.427 6.051 12.251 15.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.282 4.282 3 S 0.481 5.519 4 C -0.396 4.396 5 C 0.405 3.595 6 O -0.399 6.399 7 O -0.329 6.329 8 C -0.042 4.042 9 C -0.120 4.120 10 C -0.040 4.040 11 N -0.247 5.247 12 C 0.067 3.933 13 C -0.542 4.542 14 H 0.082 0.918 15 C -0.145 4.145 16 N -0.534 5.534 17 Si 0.720 3.280 18 H -0.208 1.208 19 H -0.215 1.215 20 H -0.199 1.199 21 C -0.059 4.059 22 C -0.064 4.064 23 C -0.188 4.188 24 C -0.197 4.197 25 C -0.208 4.208 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.123 0.877 29 H 0.271 0.729 30 H 0.168 0.832 31 H 0.047 0.953 32 H 0.112 0.888 33 H 0.054 0.946 34 H 0.005 0.995 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.038 0.962 38 H 0.069 0.931 39 H 0.052 0.948 40 H 0.098 0.902 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.091 0.909 45 H 0.064 0.936 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.035 7.652 11.990 16.336 hybrid contribution 1.530 -2.106 -0.952 2.772 sum -6.505 5.546 11.038 13.961 Atomic orbital electron populations 1.20660 0.87489 1.05111 1.02202 1.24108 1.01586 0.97077 1.05423 1.82837 0.93305 1.07026 1.68777 1.23069 0.94410 0.97552 1.24598 1.19352 0.88157 0.79849 0.72134 1.90946 1.42767 1.59347 1.46808 1.84593 1.37214 1.24546 1.86520 1.20712 0.96279 0.94520 0.92700 1.18531 0.91682 0.96760 1.04999 1.21309 0.98765 0.90102 0.93823 1.62131 1.29150 1.28949 1.04422 1.19772 0.86790 0.96365 0.90382 1.21136 0.93361 1.49377 0.90361 0.91804 1.24969 0.94820 0.95705 0.99046 1.69962 1.01019 1.50762 1.31689 0.86595 0.78422 0.78087 0.84870 1.20782 1.21456 1.19902 1.22093 0.91865 0.90290 1.01673 1.20535 0.95864 0.95117 0.94860 1.21788 0.98394 0.99869 0.98778 1.21854 0.99286 0.97058 1.01552 1.22287 1.00539 1.01872 0.96141 0.91122 0.91384 0.87720 0.72878 0.83190 0.95271 0.88809 0.94640 0.99539 0.93037 0.89507 0.96152 0.93146 0.94754 0.90232 0.93380 0.93252 0.92633 0.90868 0.93613 0.93433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.18 9.45 36.01 0.34 -0.84 16 2 C -0.16 -2.42 6.28 -35.85 -0.23 -2.64 16 3 S 0.21 2.98 22.87 -107.50 -2.46 0.53 16 4 C -0.28 -4.72 6.45 -36.84 -0.24 -4.96 16 5 C 0.56 9.32 8.30 34.01 0.28 9.60 16 6 O -0.51 -9.91 17.63 -19.36 -0.34 -10.25 16 7 O -0.52 -6.45 13.29 -41.04 -0.55 -7.00 16 8 C -0.01 -0.14 8.68 -40.41 -0.35 -0.49 16 9 C -0.11 -1.82 4.24 -106.46 -0.45 -2.27 16 10 C 0.09 1.49 3.99 -4.97 -0.02 1.47 16 11 N -0.52 -10.08 2.97 -237.53 -0.70 -10.79 16 12 C 0.19 4.77 4.53 -4.98 -0.02 4.75 16 13 C -0.50 -13.63 8.16 -34.44 -0.28 -13.91 16 14 H 0.06 1.70 7.43 -52.48 -0.39 1.31 16 15 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 16 N -0.89 -26.72 13.29 55.43 0.74 -25.99 16 17 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 C 0.07 1.23 3.99 -3.82 -0.02 1.22 16 22 C -0.06 -0.90 0.85 -154.51 -0.13 -1.03 16 23 C -0.13 -1.95 8.28 37.16 0.31 -1.64 16 24 C -0.14 -1.79 8.46 37.15 0.31 -1.48 16 25 C -0.15 -1.85 7.06 37.16 0.26 -1.59 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.10 1.41 3.43 -51.93 -0.18 1.23 16 29 H 0.41 3.07 9.11 45.56 0.42 3.49 16 30 H 0.15 2.83 8.06 -52.49 -0.42 2.41 16 31 H 0.03 0.51 8.08 -51.93 -0.42 0.09 16 32 H 0.09 1.33 3.57 -51.93 -0.19 1.15 16 33 H 0.04 0.96 6.02 -51.93 -0.31 0.65 16 34 H -0.01 -0.36 8.12 -51.93 -0.42 -0.78 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 36 H 0.09 1.79 6.59 -51.93 -0.34 1.44 16 37 H 0.02 0.35 7.84 -51.93 -0.41 -0.05 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 1.29 4.95 -51.93 -0.26 1.04 16 41 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.07 0.90 3.53 -51.93 -0.18 0.71 16 45 H 0.04 0.49 8.13 -51.93 -0.42 0.07 16 46 H 0.05 0.57 8.07 -51.93 -0.42 0.15 16 LS Contribution 373.31 15.07 5.63 5.63 Total: -1.00 -31.99 373.31 -9.07 -41.06 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -6.04 Total: 2.52 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -0.33 Total: -12.34 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 0.03 Total: -36.78 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.89 Total: -17.25 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 2.98 SS G_CDS: -2.46 Total: 0.53 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.99 -9.07 -41.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610589170.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.827 kcal (2) G-P(sol) polarization free energy of solvation -31.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds