Wall clock time and date at job start Tue Mar 31 2020 14:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 S 1.70622 * 124.51898 * 2 1 4 4 C 1.75825 * 91.56375 * 179.97438 * 3 2 1 5 5 C 1.46395 * 125.46578 * 179.97438 * 4 3 2 6 6 O 1.21626 * 120.00276 * 180.02562 * 5 4 3 7 7 O 1.34899 * 119.99397 * 0.02562 * 5 4 3 8 8 C 1.36760 * 109.07729 * 359.75963 * 4 3 2 9 9 C 1.33852 * 124.51769 * 179.97438 * 2 1 3 10 10 C 1.50697 * 122.44881 * 359.97438 * 9 2 1 11 11 N 1.46905 * 109.47074 * 79.49007 * 10 9 2 12 12 C 1.46899 * 111.00067 * 61.21275 * 11 10 9 13 13 C 1.50699 * 109.47132 * 190.00051 * 12 11 10 14 14 H 1.08005 * 119.99758 * 359.97438 * 13 12 11 15 15 C 1.37870 * 120.00043 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00172 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00275 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47097 * 89.99455 * 17 15 13 19 19 H 1.48502 * 109.47326 * 209.99930 * 17 15 13 20 20 H 1.48503 * 109.46789 * 330.00042 * 17 15 13 21 21 C 1.46902 * 111.00064 * 185.17104 * 11 10 9 22 22 C 1.52996 * 109.47467 * 83.07598 * 21 11 10 23 23 C 1.53010 * 109.47005 * 52.60075 * 22 21 11 24 24 C 1.52992 * 109.47417 * 172.60305 * 22 21 11 25 25 C 1.53005 * 109.47270 * 292.60496 * 22 21 11 26 26 H 1.08998 * 109.47196 * 272.35083 * 1 2 3 27 27 H 1.09004 * 109.47090 * 32.34665 * 1 2 3 28 28 H 1.08996 * 109.47302 * 152.34928 * 1 2 3 29 29 H 0.96699 * 116.99695 * 180.02562 * 7 5 4 30 30 H 1.08000 * 123.36029 * 180.23885 * 8 4 3 31 31 H 1.08993 * 109.47876 * 199.48982 * 10 9 2 32 32 H 1.09002 * 109.46787 * 319.49151 * 10 9 2 33 33 H 1.08997 * 109.47103 * 310.00365 * 12 11 10 34 34 H 1.08993 * 109.46827 * 70.00222 * 12 11 10 35 35 H 0.96997 * 120.00500 * 180.02562 * 16 15 13 36 36 H 1.08994 * 109.47081 * 203.07730 * 21 11 10 37 37 H 1.08999 * 109.47129 * 323.07823 * 21 11 10 38 38 H 1.08998 * 109.46743 * 66.61853 * 23 22 21 39 39 H 1.08997 * 109.46956 * 186.61665 * 23 22 21 40 40 H 1.08994 * 109.47102 * 306.61490 * 23 22 21 41 41 H 1.08998 * 109.47067 * 64.89137 * 24 22 21 42 42 H 1.08999 * 109.47317 * 184.88520 * 24 22 21 43 43 H 1.09001 * 109.47432 * 304.88599 * 24 22 21 44 44 H 1.09006 * 109.47044 * 68.20348 * 25 22 21 45 45 H 1.08998 * 109.47421 * 188.20988 * 25 22 21 46 46 H 1.08999 * 109.46710 * 308.20867 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4739 1.4058 0.0000 4 6 3.9492 0.4494 0.0008 5 6 5.3106 0.9878 0.0006 6 8 6.2635 0.2320 0.0007 7 8 5.5080 2.3222 0.0003 8 6 3.6212 -0.8783 0.0064 9 6 2.2655 -1.1029 0.0005 10 6 1.6759 -2.4897 0.0017 11 7 1.2513 -2.8424 -1.3597 12 6 2.3932 -2.8428 -2.2838 13 6 1.8931 -2.9642 -3.7002 14 1 0.8329 -3.0346 -3.8944 15 6 2.7888 -2.9866 -4.7480 16 7 4.0797 -2.9015 -4.5115 17 14 2.1690 -3.1364 -6.5039 18 1 1.9308 -1.7811 -7.0620 19 1 3.1836 -3.8402 -7.3287 20 1 0.8996 -3.9071 -6.5165 21 6 0.5600 -4.1386 -1.3764 22 6 -0.9075 -3.9389 -0.9925 23 6 -1.5239 -2.8552 -1.8796 24 6 -1.6688 -5.2516 -1.1875 25 6 -0.9975 -3.5101 0.4734 26 1 -0.3633 0.0422 1.0268 27 1 -0.3633 0.8682 -0.5499 28 1 -0.3634 -0.9102 -0.4769 29 1 6.4245 2.6304 -0.0002 30 1 4.3545 -1.6712 0.0118 31 1 2.4252 -3.2029 0.3447 32 1 0.8149 -2.5178 0.6696 33 1 2.9501 -1.9124 -2.1736 34 1 3.0452 -3.6858 -2.0552 35 1 4.7100 -2.9169 -5.2487 36 1 0.6187 -4.5688 -2.3761 37 1 1.0338 -4.8123 -0.6625 38 1 -1.5668 -3.2098 -2.9094 39 1 -2.5315 -2.6297 -1.5306 40 1 -0.9123 -1.9544 -1.8306 41 1 -1.2866 -5.9998 -0.4931 42 1 -2.7296 -5.0881 -0.9975 43 1 -1.5327 -5.6021 -2.2106 44 1 -0.5832 -2.5080 0.5849 45 1 -2.0409 -3.5090 0.7884 46 1 -0.4322 -4.2077 1.0914 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610589170.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:10 Heat of formation + Delta-G solvation = -80.399091 kcal Electronic energy + Delta-G solvation = -26755.670683 eV Core-core repulsion = 23157.105364 eV Total energy + Delta-G solvation = -3598.565318 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.23164 -40.41901 -38.59035 -37.10572 -35.96371 -34.38048 -33.16002 -30.17980 -28.96362 -28.19996 -27.84914 -27.10737 -25.50078 -24.91432 -23.13337 -21.51479 -19.70645 -19.61795 -19.59115 -18.38374 -18.18023 -17.26526 -16.80402 -16.54826 -16.14187 -16.05324 -15.78088 -15.20634 -14.80174 -14.54462 -14.48990 -14.34332 -13.99507 -13.80342 -13.54095 -13.47785 -13.22897 -13.01956 -12.84629 -12.81772 -12.72819 -12.65079 -12.59737 -12.53326 -12.28127 -12.06075 -11.92473 -11.81176 -11.67112 -11.33783 -11.30314 -11.15804 -10.88123 -10.56459 -9.62331 -9.34564 -8.87445 -8.15696 -6.23988 -0.63543 0.48953 0.89775 1.16693 1.38709 1.39486 1.50170 1.83898 2.02284 2.40765 3.17100 3.44925 3.88211 4.05260 4.09354 4.16649 4.20686 4.27623 4.32485 4.46854 4.62389 4.67247 4.73184 4.83674 4.86745 4.91838 4.97610 5.02677 5.04121 5.09416 5.12746 5.21693 5.25760 5.33196 5.34535 5.39454 5.44305 5.47977 5.49423 5.53870 5.71251 5.74720 5.93680 6.13554 6.43756 6.71271 6.86460 6.94538 7.44824 8.94809 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009160 B = 0.005519 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3055.925517 B = 5071.961772 C = 7110.081112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.157 4.157 3 S 0.287 5.713 4 C -0.310 4.310 5 C 0.564 3.436 6 O -0.550 6.550 7 O -0.501 6.501 8 C -0.031 4.031 9 C -0.135 4.135 10 C 0.093 3.907 11 N -0.512 5.512 12 C 0.211 3.789 13 C -0.507 4.507 14 H 0.067 0.933 15 C -0.001 4.001 16 N -0.936 5.936 17 Si 0.959 3.041 18 H -0.275 1.275 19 H -0.288 1.288 20 H -0.261 1.261 21 C 0.069 3.931 22 C -0.057 4.057 23 C -0.128 4.128 24 C -0.137 4.137 25 C -0.148 4.148 26 H 0.105 0.895 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.436 0.564 30 H 0.122 0.878 31 H 0.013 0.987 32 H 0.128 0.872 33 H 0.010 0.990 34 H -0.055 1.055 35 H 0.259 0.741 36 H 0.052 0.948 37 H 0.019 0.981 38 H 0.028 0.972 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.072 0.928 43 H 0.040 0.960 44 H 0.073 0.927 45 H 0.071 0.929 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.868 7.659 13.037 18.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.278 4.278 3 S 0.557 5.443 4 C -0.428 4.428 5 C 0.410 3.590 6 O -0.443 6.443 7 O -0.315 6.315 8 C -0.066 4.066 9 C -0.146 4.146 10 C -0.036 4.036 11 N -0.235 5.235 12 C 0.085 3.915 13 C -0.545 4.545 14 H 0.085 0.915 15 C -0.198 4.198 16 N -0.577 5.577 17 Si 0.785 3.215 18 H -0.201 1.201 19 H -0.214 1.214 20 H -0.185 1.185 21 C -0.059 4.059 22 C -0.058 4.058 23 C -0.185 4.185 24 C -0.195 4.195 25 C -0.205 4.205 26 H 0.123 0.877 27 H 0.103 0.897 28 H 0.113 0.887 29 H 0.298 0.702 30 H 0.140 0.860 31 H 0.031 0.969 32 H 0.145 0.855 33 H 0.028 0.972 34 H -0.038 1.038 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.037 0.963 38 H 0.047 0.953 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.091 0.909 43 H 0.060 0.940 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.496 9.284 12.792 19.545 hybrid contribution 2.583 -2.520 -1.133 3.782 sum -8.913 6.764 11.659 16.160 Atomic orbital electron populations 1.20835 0.85002 1.05388 1.04516 1.24602 1.03374 0.96983 1.02819 1.82466 0.90377 1.04944 1.66560 1.23331 0.96245 0.98015 1.25174 1.19393 0.87700 0.80701 0.71220 1.90922 1.43950 1.60592 1.48867 1.84530 1.39402 1.22002 1.85566 1.20641 0.96710 0.94723 0.94532 1.18493 0.91361 0.97407 1.07354 1.21409 0.99657 0.90015 0.92524 1.62094 1.26454 1.29737 1.05201 1.19343 0.87711 0.93226 0.91232 1.21466 0.93445 1.48170 0.91436 0.91451 1.25863 0.94888 0.95527 1.03564 1.70125 1.02402 1.52380 1.32837 0.85527 0.78181 0.78316 0.79489 1.20096 1.21444 1.18522 1.22143 0.94646 0.89350 0.99798 1.20485 0.92742 0.96106 0.96459 1.21749 0.99837 0.99141 0.97783 1.21830 1.00444 0.96212 1.00976 1.22227 1.02394 1.01730 0.94120 0.87712 0.89720 0.88691 0.70201 0.86035 0.96890 0.85459 0.97217 1.03773 0.93228 0.92971 0.96267 0.95263 0.91791 0.91636 0.92645 0.90927 0.94042 0.90851 0.90966 0.93115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.07 9.45 71.24 0.67 -1.40 16 2 C -0.16 -4.42 6.28 24.69 0.15 -4.26 16 3 S 0.29 7.53 22.87 -56.49 -1.29 6.24 16 4 C -0.31 -10.73 6.45 24.05 0.16 -10.58 16 5 C 0.56 19.17 8.30 69.94 0.58 19.75 16 6 O -0.55 -22.61 17.63 19.42 0.34 -22.27 16 7 O -0.50 -11.95 13.29 -58.14 -0.77 -12.72 16 8 C -0.03 -1.19 8.68 21.73 0.19 -1.00 16 9 C -0.14 -4.64 4.24 -21.06 -0.09 -4.73 16 10 C 0.09 3.16 3.99 85.56 0.34 3.50 16 11 N -0.51 -20.31 2.97 -905.40 -2.69 -22.99 16 12 C 0.21 11.16 4.53 85.56 0.39 11.55 16 13 C -0.51 -28.38 8.16 25.60 0.21 -28.17 16 14 H 0.07 3.65 7.43 -2.91 -0.02 3.63 16 15 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 16 N -0.94 -58.39 13.29 21.44 0.28 -58.11 16 17 Si 0.96 45.19 29.54 68.60 2.03 47.22 16 18 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 19 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 20 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 21 C 0.07 2.50 3.99 86.30 0.34 2.84 16 22 C -0.06 -1.53 0.85 -52.18 -0.04 -1.58 16 23 C -0.13 -3.53 8.28 71.99 0.60 -2.94 16 24 C -0.14 -3.21 8.46 71.98 0.61 -2.60 16 25 C -0.15 -3.11 7.06 71.98 0.51 -2.60 16 26 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.09 2.25 3.43 -2.39 -0.01 2.24 16 29 H 0.44 5.89 9.11 -74.06 -0.67 5.21 16 30 H 0.12 5.19 8.06 -2.91 -0.02 5.17 16 31 H 0.01 0.48 8.08 -2.39 -0.02 0.46 16 32 H 0.13 3.43 3.57 -2.39 -0.01 3.43 16 33 H 0.01 0.57 6.02 -2.39 -0.01 0.55 16 34 H -0.06 -3.32 8.12 -2.39 -0.02 -3.34 16 35 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 36 H 0.05 2.24 6.59 -2.39 -0.02 2.22 16 37 H 0.02 0.69 7.84 -2.39 -0.02 0.67 16 38 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.06 2.01 4.95 -2.39 -0.01 1.99 16 41 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.07 1.38 8.14 -2.39 -0.02 1.37 16 43 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.07 1.53 3.53 -2.38 -0.01 1.52 16 45 H 0.07 1.20 8.13 -2.39 -0.02 1.18 16 46 H 0.05 1.05 8.07 -2.39 -0.02 1.03 16 Total: -1.00 -73.93 373.31 3.31 -70.62 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: 0.33 Total: 13.82 kcal Atomic # 6 Polarization: -26.88 SS G_CDS: 5.08 Total: -21.81 kcal Atomic # 7 Polarization: -78.70 SS G_CDS: -2.40 Total: -81.10 kcal Atomic # 8 Polarization: -34.56 SS G_CDS: -0.43 Total: -34.99 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Atomic # 16 Polarization: 7.53 SS G_CDS: -1.29 Total: 6.24 kcal Total: -73.93 3.31 -70.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610589170.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.782 kcal (2) G-P(sol) polarization free energy of solvation -73.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds