Wall clock time and date at job start Tue Mar 31 2020 14:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 S 1.70611 * 124.51931 * 2 1 4 4 C 1.75835 * 91.56613 * 180.02562 * 3 2 1 5 5 C 1.46392 * 125.46409 * 180.02562 * 4 3 2 6 6 O 1.21630 * 120.00354 * 180.02562 * 5 4 3 7 7 O 1.34897 * 119.99950 * 0.02562 * 5 4 3 8 8 C 1.36754 * 109.07212 * 359.76167 * 4 3 2 9 9 C 1.33868 * 124.52017 * 180.02562 * 2 1 3 10 10 C 1.50697 * 122.44259 * 359.97250 * 9 2 1 11 11 N 1.46901 * 109.47187 * 80.00308 * 10 9 2 12 12 C 1.46901 * 110.99407 * 66.04605 * 11 10 9 13 13 C 1.50697 * 109.47515 * 63.35035 * 12 11 10 14 14 H 1.07997 * 120.00048 * 4.60465 * 13 12 11 15 15 C 1.37872 * 120.00112 * 184.61131 * 13 12 11 16 16 N 1.31514 * 120.00180 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00231 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.46678 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47079 * 119.99619 * 17 15 13 20 20 H 1.48493 * 109.47093 * 239.99837 * 17 15 13 21 21 C 1.46900 * 111.00340 * 189.99725 * 11 10 9 22 22 C 1.52999 * 109.46892 * 163.96544 * 21 11 10 23 23 C 1.53003 * 109.46720 * 178.06334 * 22 21 11 24 24 C 1.53001 * 109.47361 * 65.00039 * 23 22 21 25 25 C 1.53002 * 109.46973 * 185.00076 * 23 22 21 26 26 H 1.08992 * 109.47049 * 269.99981 * 1 2 3 27 27 H 1.09000 * 109.47306 * 30.00310 * 1 2 3 28 28 H 1.08998 * 109.47062 * 149.99859 * 1 2 3 29 29 H 0.96699 * 117.00096 * 179.97438 * 7 5 4 30 30 H 1.07999 * 123.35245 * 180.24196 * 8 4 3 31 31 H 1.09000 * 109.46941 * 200.00395 * 10 9 2 32 32 H 1.09005 * 109.47133 * 320.00277 * 10 9 2 33 33 H 1.09007 * 109.46540 * 183.34839 * 12 11 10 34 34 H 1.09001 * 109.47464 * 303.33763 * 12 11 10 35 35 H 0.96996 * 120.00325 * 179.97438 * 16 15 13 36 36 H 1.09001 * 109.46829 * 283.97024 * 21 11 10 37 37 H 1.09004 * 109.46788 * 43.96479 * 21 11 10 38 38 H 1.09002 * 109.47071 * 298.05897 * 22 21 11 39 39 H 1.08997 * 109.46994 * 58.06627 * 22 21 11 40 40 H 1.09001 * 109.46840 * 304.99722 * 23 22 21 41 41 H 1.08998 * 109.47204 * 179.97438 * 24 23 22 42 42 H 1.09006 * 109.46857 * 299.99947 * 24 23 22 43 43 H 1.09001 * 109.46877 * 60.00011 * 24 23 22 44 44 H 1.08994 * 109.46902 * 59.99845 * 25 23 22 45 45 H 1.08998 * 109.47153 * 179.97438 * 25 23 22 46 46 H 1.09001 * 109.47048 * 299.99518 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4738 1.4057 0.0000 4 6 3.9493 0.4493 -0.0008 5 6 5.3105 0.9878 -0.0006 6 8 6.2636 0.2320 -0.0017 7 8 5.5080 2.3222 0.0007 8 6 3.6212 -0.8783 0.0044 9 6 2.2656 -1.1030 -0.0005 10 6 1.6759 -2.4898 -0.0005 11 7 1.2625 -2.8461 -1.3644 12 6 2.4259 -2.9610 -2.2539 13 6 3.3106 -4.0857 -1.7813 14 1 3.0000 -4.7055 -0.9532 15 6 4.5164 -4.3233 -2.4060 16 7 4.8945 -3.5688 -3.4146 17 14 5.6134 -5.7171 -1.8197 18 1 4.9650 -6.4104 -0.6777 19 1 5.8246 -6.6810 -2.9293 20 1 6.9228 -5.1673 -1.3856 21 6 0.4723 -4.0845 -1.3684 22 6 -0.2673 -4.2131 -2.7016 23 6 -1.0520 -5.5264 -2.7248 24 6 -2.1468 -5.4854 -1.6567 25 6 -1.6903 -5.7148 -4.1024 26 1 -0.3633 0.0000 1.0276 27 1 -0.3634 0.8899 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 6.4246 2.6304 0.0012 30 1 4.3545 -1.6712 0.0088 31 1 2.4225 -3.2020 0.3506 32 1 0.8094 -2.5162 0.6604 33 1 2.0877 -3.1669 -3.2695 34 1 2.9873 -2.0267 -2.2404 35 1 5.7430 -3.7358 -3.8539 36 1 1.1359 -4.9392 -1.2371 37 1 -0.2505 -4.0569 -0.5530 38 1 -0.9562 -3.3762 -2.8171 39 1 0.4535 -4.2060 -3.5191 40 1 -0.3762 -6.3569 -2.5208 41 1 -2.7060 -6.4208 -1.6736 42 1 -1.6919 -5.3512 -0.6752 43 1 -2.8225 -4.6548 -1.8608 44 1 -0.9104 -5.7440 -4.8632 45 1 -2.2489 -6.6506 -4.1191 46 1 -2.3661 -4.8842 -4.3064 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610589852.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:07 Heat of formation + Delta-G solvation = -78.720324 kcal Electronic energy + Delta-G solvation = -26115.422719 eV Core-core repulsion = 22516.930197 eV Total energy + Delta-G solvation = -3598.492522 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.84258 -38.64569 -36.97149 -35.81443 -35.00023 -32.45677 -31.82067 -29.24389 -27.81405 -26.93339 -26.74027 -24.60495 -23.63482 -23.19080 -21.12566 -19.80278 -19.37293 -18.31527 -18.17486 -16.85022 -16.29217 -15.75823 -15.46766 -15.17524 -14.83022 -14.51580 -14.09331 -13.87963 -13.66685 -13.43106 -13.15255 -12.99313 -12.59239 -12.51763 -12.23462 -12.07145 -11.87948 -11.77566 -11.54389 -11.40105 -11.32543 -11.07240 -10.94813 -10.78719 -10.77195 -10.58745 -10.41477 -10.32862 -10.28839 -10.05573 -9.90252 -9.81253 -9.51912 -8.40443 -8.30750 -8.05559 -7.16407 -5.99655 -4.08292 0.73684 1.77633 2.20907 2.56427 3.19721 3.28852 3.33346 3.38190 3.38724 4.43139 4.94986 5.11752 5.22849 5.27518 5.31911 5.37578 5.46273 5.52382 5.65092 5.71439 5.79706 5.86060 5.88954 6.00699 6.02188 6.04899 6.12093 6.19908 6.23713 6.28765 6.36723 6.42784 6.44886 6.56781 6.58759 6.61571 6.70475 6.89283 6.96230 6.97586 7.29971 7.57829 7.93650 8.05905 8.07637 8.27561 8.32751 9.01673 9.58323 11.05203 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009797 B = 0.004880 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2857.189010 B = 5736.777373 C = 8009.163928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.170 4.170 3 S 0.195 5.805 4 C -0.282 4.282 5 C 0.559 3.441 6 O -0.505 6.505 7 O -0.519 6.519 8 C 0.005 3.995 9 C -0.100 4.100 10 C 0.118 3.882 11 N -0.536 5.536 12 C 0.187 3.813 13 C -0.548 4.548 14 H 0.056 0.944 15 C 0.069 3.931 16 N -0.885 5.885 17 Si 0.881 3.119 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.283 1.283 21 C 0.059 3.941 22 C -0.102 4.102 23 C -0.097 4.097 24 C -0.144 4.144 25 C -0.144 4.144 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.094 0.906 29 H 0.412 0.588 30 H 0.159 0.841 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.028 0.972 34 H 0.035 0.965 35 H 0.261 0.739 36 H 0.047 0.953 37 H 0.049 0.951 38 H 0.056 0.944 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.045 0.955 42 H 0.055 0.945 43 H 0.050 0.950 44 H 0.054 0.946 45 H 0.047 0.953 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.293 7.110 6.419 14.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.290 4.290 3 S 0.464 5.536 4 C -0.399 4.399 5 C 0.403 3.597 6 O -0.394 6.394 7 O -0.331 6.331 8 C -0.028 4.028 9 C -0.113 4.113 10 C -0.012 4.012 11 N -0.260 5.260 12 C 0.061 3.939 13 C -0.587 4.587 14 H 0.074 0.926 15 C -0.134 4.134 16 N -0.523 5.523 17 Si 0.709 3.291 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.069 4.069 22 C -0.140 4.140 23 C -0.116 4.116 24 C -0.202 4.202 25 C -0.201 4.201 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.113 0.887 29 H 0.270 0.730 30 H 0.176 0.824 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.046 0.954 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.066 0.934 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.915 8.766 6.104 15.272 hybrid contribution 2.401 -2.845 0.363 3.740 sum -8.514 5.921 6.466 12.221 Atomic orbital electron populations 1.20396 0.87505 1.04101 1.02210 1.24151 1.01487 0.97128 1.06217 1.82776 0.93706 1.07254 1.69815 1.23085 0.94147 0.97521 1.25157 1.19384 0.88255 0.79772 0.72320 1.90970 1.42708 1.59271 1.46490 1.84590 1.37118 1.24693 1.86675 1.20877 0.96646 0.94476 0.90841 1.18574 0.91758 0.96634 1.04307 1.20547 0.98022 0.90549 0.92056 1.62566 1.24198 1.31887 1.07344 1.19768 0.85809 0.96577 0.91743 1.21680 1.03990 1.16070 1.16950 0.92553 1.24900 0.97642 0.96002 0.94847 1.69937 1.21919 1.38496 1.21946 0.86715 0.81084 0.82607 0.78711 1.19884 1.21049 1.20889 1.21999 0.95603 0.92959 0.96350 1.21515 0.98378 0.95385 0.98739 1.21103 0.96823 0.98988 0.94698 1.21864 0.98386 1.00762 0.99156 1.21811 1.00459 1.00701 0.97171 0.91180 0.91709 0.88712 0.73006 0.82374 0.92828 0.92013 0.95417 0.94704 0.92922 0.93457 0.93258 0.92508 0.91321 0.91411 0.93600 0.92571 0.93045 0.92685 0.93426 0.93049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 9.77 36.00 0.35 -0.65 16 2 C -0.17 -2.57 6.28 -35.84 -0.22 -2.80 16 3 S 0.20 2.80 22.87 -107.50 -2.46 0.34 16 4 C -0.28 -5.00 6.45 -36.84 -0.24 -5.23 16 5 C 0.56 9.77 8.30 34.01 0.28 10.06 16 6 O -0.50 -10.54 17.63 -19.37 -0.34 -10.88 16 7 O -0.52 -6.76 13.29 -41.03 -0.55 -7.31 16 8 C 0.01 0.11 8.87 -40.42 -0.36 -0.25 16 9 C -0.10 -1.78 4.43 -106.46 -0.47 -2.25 16 10 C 0.12 2.14 4.26 -4.98 -0.02 2.12 16 11 N -0.54 -10.49 4.45 -237.51 -1.06 -11.55 16 12 C 0.19 4.55 4.76 -4.98 -0.02 4.53 16 13 C -0.55 -14.36 7.34 -34.44 -0.25 -14.62 16 14 H 0.06 1.47 5.95 -52.49 -0.31 1.16 16 15 C 0.07 1.92 5.46 -17.82 -0.10 1.82 16 16 N -0.88 -25.93 13.29 55.43 0.74 -25.19 16 17 Si 0.88 21.52 29.54 -169.99 -5.02 16.50 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 21 C 0.06 1.04 4.51 -3.82 -0.02 1.03 16 22 C -0.10 -1.67 4.76 -26.73 -0.13 -1.80 16 23 C -0.10 -1.34 2.92 -90.62 -0.26 -1.60 16 24 C -0.14 -1.70 8.95 37.16 0.33 -1.37 16 25 C -0.14 -1.79 9.19 37.16 0.34 -1.45 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.09 1.25 7.25 -51.93 -0.38 0.87 16 29 H 0.41 3.31 9.11 45.56 0.42 3.72 16 30 H 0.16 3.46 8.06 -52.49 -0.42 3.04 16 31 H 0.05 1.08 6.55 -51.93 -0.34 0.74 16 32 H 0.06 0.96 7.44 -51.93 -0.39 0.57 16 33 H 0.03 0.74 6.65 -51.93 -0.35 0.39 16 34 H 0.03 0.94 6.52 -51.93 -0.34 0.61 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.05 0.96 6.12 -51.93 -0.32 0.64 16 37 H 0.05 0.76 6.32 -51.93 -0.33 0.43 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 1.32 6.69 -51.93 -0.35 0.97 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.67 6.61 -51.93 -0.34 0.32 16 43 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 383.48 15.07 5.78 5.78 Total: -1.00 -31.14 383.48 -10.08 -41.22 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -6.38 Total: 3.57 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: -0.79 Total: -12.48 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: -0.32 Total: -36.74 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.89 Total: -18.19 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 2.80 SS G_CDS: -2.46 Total: 0.34 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.14 -10.08 -41.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610589852.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.505 kcal (2) G-P(sol) polarization free energy of solvation -31.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds