Wall clock time and date at job start Tue Mar 31 2020 14:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 S 1.70611 * 124.51931 * 2 1 4 4 C 1.75835 * 91.56613 * 180.02562 * 3 2 1 5 5 C 1.46392 * 125.46409 * 180.02562 * 4 3 2 6 6 O 1.21630 * 120.00354 * 180.02562 * 5 4 3 7 7 O 1.34897 * 119.99950 * 0.02562 * 5 4 3 8 8 C 1.36754 * 109.07212 * 359.76167 * 4 3 2 9 9 C 1.33868 * 124.52017 * 180.02562 * 2 1 3 10 10 C 1.50697 * 122.44259 * 359.97250 * 9 2 1 11 11 N 1.46901 * 109.47187 * 80.00308 * 10 9 2 12 12 C 1.46901 * 110.99407 * 66.04605 * 11 10 9 13 13 C 1.50697 * 109.47515 * 63.35035 * 12 11 10 14 14 H 1.07997 * 120.00048 * 4.60465 * 13 12 11 15 15 C 1.37872 * 120.00112 * 184.61131 * 13 12 11 16 16 N 1.31514 * 120.00180 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00231 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.46678 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47079 * 119.99619 * 17 15 13 20 20 H 1.48493 * 109.47093 * 239.99837 * 17 15 13 21 21 C 1.46900 * 111.00340 * 189.99725 * 11 10 9 22 22 C 1.52999 * 109.46892 * 163.96544 * 21 11 10 23 23 C 1.53003 * 109.46720 * 178.06334 * 22 21 11 24 24 C 1.53001 * 109.47361 * 65.00039 * 23 22 21 25 25 C 1.53002 * 109.46973 * 185.00076 * 23 22 21 26 26 H 1.08992 * 109.47049 * 269.99981 * 1 2 3 27 27 H 1.09000 * 109.47306 * 30.00310 * 1 2 3 28 28 H 1.08998 * 109.47062 * 149.99859 * 1 2 3 29 29 H 0.96699 * 117.00096 * 179.97438 * 7 5 4 30 30 H 1.07999 * 123.35245 * 180.24196 * 8 4 3 31 31 H 1.09000 * 109.46941 * 200.00395 * 10 9 2 32 32 H 1.09005 * 109.47133 * 320.00277 * 10 9 2 33 33 H 1.09007 * 109.46540 * 183.34839 * 12 11 10 34 34 H 1.09001 * 109.47464 * 303.33763 * 12 11 10 35 35 H 0.96996 * 120.00325 * 179.97438 * 16 15 13 36 36 H 1.09001 * 109.46829 * 283.97024 * 21 11 10 37 37 H 1.09004 * 109.46788 * 43.96479 * 21 11 10 38 38 H 1.09002 * 109.47071 * 298.05897 * 22 21 11 39 39 H 1.08997 * 109.46994 * 58.06627 * 22 21 11 40 40 H 1.09001 * 109.46840 * 304.99722 * 23 22 21 41 41 H 1.08998 * 109.47204 * 179.97438 * 24 23 22 42 42 H 1.09006 * 109.46857 * 299.99947 * 24 23 22 43 43 H 1.09001 * 109.46877 * 60.00011 * 24 23 22 44 44 H 1.08994 * 109.46902 * 59.99845 * 25 23 22 45 45 H 1.08998 * 109.47153 * 179.97438 * 25 23 22 46 46 H 1.09001 * 109.47048 * 299.99518 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4738 1.4057 0.0000 4 6 3.9493 0.4493 -0.0008 5 6 5.3105 0.9878 -0.0006 6 8 6.2636 0.2320 -0.0017 7 8 5.5080 2.3222 0.0007 8 6 3.6212 -0.8783 0.0044 9 6 2.2656 -1.1030 -0.0005 10 6 1.6759 -2.4898 -0.0005 11 7 1.2625 -2.8461 -1.3644 12 6 2.4259 -2.9610 -2.2539 13 6 3.3106 -4.0857 -1.7813 14 1 3.0000 -4.7055 -0.9532 15 6 4.5164 -4.3233 -2.4060 16 7 4.8945 -3.5688 -3.4146 17 14 5.6134 -5.7171 -1.8197 18 1 4.9650 -6.4104 -0.6777 19 1 5.8246 -6.6810 -2.9293 20 1 6.9228 -5.1673 -1.3856 21 6 0.4723 -4.0845 -1.3684 22 6 -0.2673 -4.2131 -2.7016 23 6 -1.0520 -5.5264 -2.7248 24 6 -2.1468 -5.4854 -1.6567 25 6 -1.6903 -5.7148 -4.1024 26 1 -0.3633 0.0000 1.0276 27 1 -0.3634 0.8899 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 6.4246 2.6304 0.0012 30 1 4.3545 -1.6712 0.0088 31 1 2.4225 -3.2020 0.3506 32 1 0.8094 -2.5162 0.6604 33 1 2.0877 -3.1669 -3.2695 34 1 2.9873 -2.0267 -2.2404 35 1 5.7430 -3.7358 -3.8539 36 1 1.1359 -4.9392 -1.2371 37 1 -0.2505 -4.0569 -0.5530 38 1 -0.9562 -3.3762 -2.8171 39 1 0.4535 -4.2060 -3.5191 40 1 -0.3762 -6.3569 -2.5208 41 1 -2.7060 -6.4208 -1.6736 42 1 -1.6919 -5.3512 -0.6752 43 1 -2.8225 -4.6548 -1.8608 44 1 -0.9104 -5.7440 -4.8632 45 1 -2.2489 -6.6506 -4.1191 46 1 -2.3661 -4.8842 -4.3064 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610589852.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:07 Heat of formation + Delta-G solvation = -98.112375 kcal Electronic energy + Delta-G solvation = -26116.263621 eV Core-core repulsion = 22516.930197 eV Total energy + Delta-G solvation = -3599.333424 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.19288 -40.06774 -38.31410 -37.10278 -36.41338 -34.48065 -33.08580 -30.54207 -29.51551 -28.26995 -27.90193 -26.22868 -24.89606 -24.87297 -22.47031 -21.29714 -20.71752 -19.60445 -19.56058 -18.33402 -18.14011 -17.20089 -16.85066 -16.63722 -16.49407 -15.95677 -15.51111 -15.36058 -14.81644 -14.74600 -14.47277 -14.33569 -14.09316 -13.78127 -13.71583 -13.28561 -13.13325 -12.97647 -12.92462 -12.83830 -12.67743 -12.64050 -12.61177 -12.33400 -12.14678 -12.08903 -11.91158 -11.86836 -11.75692 -11.66349 -11.36888 -11.26958 -11.13313 -10.56813 -9.59684 -9.32299 -8.91544 -8.12236 -6.29174 -0.60622 0.51995 0.92077 1.20371 1.29434 1.32945 1.41409 1.88647 2.03671 2.35254 3.13467 3.49329 3.94217 4.10826 4.11869 4.21102 4.23431 4.27522 4.34416 4.56403 4.57862 4.76164 4.80716 4.86667 4.87327 4.89009 4.92726 4.98773 5.02528 5.08672 5.15752 5.23031 5.26548 5.32585 5.38375 5.39068 5.42592 5.46420 5.48201 5.58419 5.61862 5.65810 5.82013 6.11660 6.30935 6.63429 6.88190 6.93273 7.40892 8.88771 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009797 B = 0.004880 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2857.189010 B = 5736.777373 C = 8009.163928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.160 4.160 3 S 0.287 5.713 4 C -0.315 4.315 5 C 0.563 3.437 6 O -0.552 6.552 7 O -0.500 6.500 8 C -0.020 4.020 9 C -0.130 4.130 10 C 0.123 3.877 11 N -0.527 5.527 12 C 0.208 3.792 13 C -0.540 4.540 14 H 0.056 0.944 15 C 0.015 3.985 16 N -0.923 5.923 17 Si 0.939 3.061 18 H -0.263 1.263 19 H -0.278 1.278 20 H -0.289 1.289 21 C 0.061 3.939 22 C -0.094 4.094 23 C -0.096 4.096 24 C -0.138 4.138 25 C -0.142 4.142 26 H 0.100 0.900 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.435 0.565 30 H 0.115 0.885 31 H 0.023 0.977 32 H 0.097 0.903 33 H -0.001 1.001 34 H 0.005 0.995 35 H 0.259 0.741 36 H 0.018 0.982 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.029 0.971 40 H 0.051 0.949 41 H 0.060 0.940 42 H 0.055 0.945 43 H 0.062 0.938 44 H 0.038 0.962 45 H 0.065 0.935 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.412 8.319 7.777 17.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.280 4.280 3 S 0.557 5.443 4 C -0.432 4.432 5 C 0.409 3.591 6 O -0.446 6.446 7 O -0.314 6.314 8 C -0.055 4.055 9 C -0.141 4.141 10 C -0.007 4.007 11 N -0.250 5.250 12 C 0.082 3.918 13 C -0.579 4.579 14 H 0.074 0.926 15 C -0.184 4.184 16 N -0.563 5.563 17 Si 0.765 3.235 18 H -0.187 1.187 19 H -0.204 1.204 20 H -0.215 1.215 21 C -0.067 4.067 22 C -0.132 4.132 23 C -0.115 4.115 24 C -0.196 4.196 25 C -0.199 4.199 26 H 0.118 0.882 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.297 0.703 30 H 0.133 0.867 31 H 0.042 0.958 32 H 0.115 0.885 33 H 0.018 0.982 34 H 0.023 0.977 35 H 0.068 0.932 36 H 0.036 0.964 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.048 0.952 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.057 0.943 45 H 0.084 0.916 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.048 9.993 7.479 18.792 hybrid contribution 3.294 -3.060 -0.025 4.496 sum -10.754 6.933 7.454 14.808 Atomic orbital electron populations 1.20573 0.84616 1.04808 1.04311 1.24667 1.03461 0.96897 1.03024 1.82365 0.90115 1.04751 1.67091 1.23326 0.96236 0.97957 1.25674 1.19450 0.87804 0.80653 0.71240 1.90944 1.44106 1.60678 1.48837 1.84522 1.39316 1.21938 1.85653 1.20643 0.96981 0.94481 0.93410 1.18456 0.91222 0.97318 1.07125 1.20558 0.98544 0.90368 0.91207 1.62507 1.21917 1.32754 1.07795 1.19287 0.86833 0.94322 0.91397 1.21941 1.03965 1.15933 1.16058 0.92586 1.25651 0.99264 0.98302 0.95163 1.70060 1.22361 1.40376 1.23482 0.85790 0.78998 0.80061 0.78627 1.18726 1.20377 1.21520 1.22074 0.95439 0.90778 0.98360 1.21438 0.97786 0.97549 0.96452 1.21077 0.97149 0.96651 0.96602 1.21809 0.97668 1.02151 0.97932 1.21788 1.00230 1.02143 0.95732 0.88159 0.89483 0.89528 0.70301 0.86728 0.95828 0.88464 0.98246 0.97720 0.93173 0.96382 0.89869 0.91289 0.95224 0.93028 0.92061 0.92642 0.91866 0.94268 0.91611 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.68 9.77 71.24 0.70 -0.98 16 2 C -0.16 -4.47 6.28 24.69 0.15 -4.31 16 3 S 0.29 7.48 22.87 -56.49 -1.29 6.19 16 4 C -0.31 -11.33 6.45 24.05 0.16 -11.17 16 5 C 0.56 20.10 8.30 69.94 0.58 20.68 16 6 O -0.55 -24.34 17.63 19.41 0.34 -24.00 16 7 O -0.50 -12.37 13.29 -58.12 -0.77 -13.14 16 8 C -0.02 -0.84 8.87 21.73 0.19 -0.64 16 9 C -0.13 -4.63 4.43 -21.06 -0.09 -4.73 16 10 C 0.12 4.45 4.26 85.56 0.36 4.82 16 11 N -0.53 -20.89 4.45 -905.35 -4.03 -24.91 16 12 C 0.21 10.74 4.76 85.56 0.41 11.15 16 13 C -0.54 -29.78 7.34 25.60 0.19 -29.59 16 14 H 0.06 3.05 5.95 -2.91 -0.02 3.03 16 15 C 0.02 0.89 5.46 84.65 0.46 1.36 16 16 N -0.92 -56.95 13.29 21.45 0.28 -56.66 16 17 Si 0.94 46.01 29.54 68.60 2.03 48.04 16 18 H -0.26 -12.30 7.11 99.48 0.71 -11.59 16 19 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 20 H -0.29 -14.36 7.11 99.48 0.71 -13.66 16 21 C 0.06 2.15 4.51 86.30 0.39 2.54 16 22 C -0.09 -3.07 4.76 30.60 0.15 -2.93 16 23 C -0.10 -2.54 2.92 -10.79 -0.03 -2.57 16 24 C -0.14 -2.85 8.95 71.98 0.64 -2.21 16 25 C -0.14 -3.33 9.19 71.98 0.66 -2.67 16 26 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.09 1.94 7.25 -2.39 -0.02 1.92 16 29 H 0.43 6.31 9.11 -74.06 -0.67 5.64 16 30 H 0.11 5.61 8.06 -2.91 -0.02 5.58 16 31 H 0.02 0.99 6.55 -2.39 -0.02 0.97 16 32 H 0.10 2.79 7.44 -2.38 -0.02 2.77 16 33 H 0.00 -0.03 6.65 -2.38 -0.02 -0.05 16 34 H 0.00 0.27 6.52 -2.39 -0.02 0.25 16 35 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 36 H 0.02 0.74 6.12 -2.39 -0.01 0.73 16 37 H 0.08 2.38 6.32 -2.39 -0.02 2.36 16 38 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.03 1.18 6.69 -2.39 -0.02 1.17 16 40 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.06 1.09 8.14 -2.39 -0.02 1.08 16 42 H 0.05 1.15 6.61 -2.38 -0.02 1.13 16 43 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -73.06 383.48 1.80 -71.26 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.32 Total: 14.49 kcal Atomic # 6 Polarization: -26.18 SS G_CDS: 4.92 Total: -21.26 kcal Atomic # 7 Polarization: -77.84 SS G_CDS: -3.74 Total: -81.58 kcal Atomic # 8 Polarization: -36.71 SS G_CDS: -0.43 Total: -37.14 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Atomic # 16 Polarization: 7.48 SS G_CDS: -1.29 Total: 6.19 kcal Total: -73.06 1.80 -71.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610589852.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.853 kcal (2) G-P(sol) polarization free energy of solvation -73.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds