Wall clock time and date at job start Tue Mar 31 2020 13:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35902 * 116.99641 * 2 1 4 4 C 1.38811 * 120.01628 * 90.00235 * 3 2 1 5 5 C 1.50697 * 119.95926 * 359.97438 * 4 3 2 6 6 C 1.38184 * 120.08842 * 180.02562 * 4 3 2 7 7 C 1.38153 * 120.12806 * 359.97438 * 6 4 3 8 8 C 1.38927 * 120.03797 * 0.02562 * 7 6 4 9 9 N 1.39794 * 120.04689 * 179.97438 * 8 7 6 10 10 C 1.34775 * 120.00071 * 328.83411 * 9 8 7 11 11 O 1.21630 * 120.00328 * 5.23251 * 10 9 8 12 12 C 1.47385 * 120.00123 * 185.22744 * 10 9 8 13 13 C 1.39246 * 120.28624 * 353.96989 * 12 10 9 14 14 C 1.38211 * 120.09211 * 180.29888 * 13 12 10 15 15 C 1.38837 * 120.67674 * 359.71181 * 14 13 12 16 16 C 1.37590 * 120.57982 * 0.02562 * 15 14 13 17 17 C 1.40719 * 119.87817 * 0.02562 * 16 15 14 18 18 C 1.40876 * 120.32655 * 179.97438 * 17 16 15 19 19 H 1.07994 * 119.99697 * 145.10275 * 18 17 16 20 20 C 1.40275 * 119.99907 * 325.09946 * 18 17 16 21 21 N 1.30624 * 120.00337 * 340.34421 * 20 18 17 22 22 Si 1.86807 * 119.99704 * 160.33755 * 20 18 17 23 23 H 1.48503 * 109.47086 * 179.97438 * 22 20 18 24 24 H 1.48497 * 109.47291 * 300.00390 * 22 20 18 25 25 H 1.48502 * 109.46574 * 60.00429 * 22 20 18 26 26 C 1.38574 * 120.01539 * 270.26769 * 3 2 1 27 27 C 1.50699 * 120.06732 * 359.97438 * 26 3 2 28 28 H 1.08997 * 109.47266 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47415 * 300.00301 * 1 2 3 30 30 H 1.08999 * 109.47087 * 60.00132 * 1 2 3 31 31 H 1.09005 * 109.47173 * 270.02403 * 5 4 3 32 32 H 1.09002 * 109.47068 * 30.02354 * 5 4 3 33 33 H 1.08999 * 109.47594 * 150.02118 * 5 4 3 34 34 H 1.08002 * 119.93381 * 179.97438 * 6 4 3 35 35 H 1.08000 * 119.98207 * 179.97438 * 7 6 4 36 36 H 0.97002 * 120.00353 * 148.83748 * 9 8 7 37 37 H 1.08005 * 119.95729 * 0.02562 * 13 12 10 38 38 H 1.07995 * 119.66331 * 179.73483 * 14 13 12 39 39 H 1.08001 * 119.71278 * 180.02562 * 15 14 13 40 40 H 1.07994 * 120.06380 * 180.02562 * 16 15 14 41 41 H 0.97000 * 119.99794 * 353.67786 * 21 20 18 42 42 H 1.08998 * 109.46861 * 270.27217 * 27 26 3 43 43 H 1.08999 * 109.46883 * 30.27764 * 27 26 3 44 44 H 1.09002 * 109.47042 * 150.27475 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 2.3611 1.8296 1.2019 5 6 2.0184 1.1580 2.5067 6 6 2.9879 3.0612 1.2037 7 6 3.3033 3.6804 0.0097 8 6 2.9902 3.0659 -1.1964 9 7 3.3088 3.6926 -2.4047 10 6 3.3158 5.0380 -2.4847 11 8 3.1387 5.7077 -1.4850 12 6 3.5380 5.6978 -3.7838 13 6 3.8653 4.9436 -4.9076 14 6 4.0789 5.5671 -6.1225 15 6 3.9651 6.9457 -6.2408 16 6 3.6377 7.7172 -5.1496 17 6 3.4161 7.1074 -3.9009 18 6 3.0810 7.8883 -2.7774 19 1 2.4002 7.5007 -2.0341 20 6 3.6317 9.1693 -2.6241 21 7 4.7156 9.4965 -3.2755 22 14 2.8148 10.4073 -1.4884 23 1 3.5869 11.6758 -1.5017 24 1 1.4285 10.6660 -1.9534 25 1 2.7804 9.8639 -0.1068 26 6 2.3555 1.8311 -1.1999 27 6 2.0094 1.1639 -2.5061 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.0200 1.4626 2.8209 32 1 2.0439 0.0761 2.3761 33 1 2.7432 1.4494 3.2668 34 1 3.2317 3.5405 2.1403 35 1 3.7928 4.6431 0.0138 36 1 3.5249 3.1592 -3.1855 37 1 3.9568 3.8703 -4.8289 38 1 4.3366 4.9758 -6.9886 39 1 4.1349 7.4167 -7.1977 40 1 3.5510 8.7889 -5.2512 41 1 5.1911 8.8278 -3.7927 42 1 2.8399 0.5332 -2.8231 43 1 1.1171 0.5517 -2.3760 44 1 1.8210 1.9245 -3.2638 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001625458637.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:08 Heat of formation + Delta-G solvation = -35.690198 kcal Electronic energy + Delta-G solvation = -27168.849755 eV Core-core repulsion = 23436.779209 eV Total energy + Delta-G solvation = -3732.070547 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.51583 -39.21748 -37.61730 -36.58295 -34.74654 -33.97851 -32.25857 -31.02085 -29.92225 -29.44010 -28.04272 -26.30402 -25.96232 -25.11765 -22.85131 -21.87614 -21.15485 -20.52276 -19.59915 -18.39695 -17.62498 -17.02092 -15.99774 -15.69279 -15.27742 -15.05816 -14.77900 -14.44055 -14.20971 -14.13960 -13.84169 -13.51544 -13.31710 -13.24411 -13.11650 -12.81469 -12.61069 -12.34735 -12.11592 -12.07372 -11.93344 -11.53369 -11.49490 -11.22871 -11.07639 -10.95091 -10.81334 -10.42002 -10.23488 -9.98551 -9.75494 -9.70222 -9.15801 -8.65649 -8.33786 -7.94128 -7.73117 -7.57922 -7.23619 -4.57261 1.39219 1.43412 2.13107 2.64475 3.15755 3.24888 3.35883 3.41811 3.67038 3.91067 3.97724 4.14752 4.53512 4.85617 4.98719 5.15705 5.17524 5.19964 5.33019 5.38079 5.42407 5.53603 5.59360 5.61432 5.67312 5.69128 5.75762 5.88536 5.96132 6.04142 6.09333 6.18704 6.33914 6.46948 6.60381 6.65132 6.68606 6.80129 6.87676 7.15092 7.22628 7.37831 7.49186 7.60422 7.61747 7.77208 7.94605 8.08219 8.14930 8.60051 8.73056 9.08729 9.94282 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014217 B = 0.003736 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.935388 B = 7492.430397 C = 8993.718465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.333 6.333 3 C 0.104 3.896 4 C -0.132 4.132 5 C -0.104 4.104 6 C -0.094 4.094 7 C -0.127 4.127 8 C 0.177 3.823 9 N -0.684 5.684 10 C 0.561 3.439 11 O -0.515 6.515 12 C -0.269 4.269 13 C -0.043 4.043 14 C -0.255 4.255 15 C -0.075 4.075 16 C -0.196 4.196 17 C 0.122 3.878 18 C -0.462 4.462 19 H 0.104 0.896 20 C 0.033 3.967 21 N -0.788 5.788 22 Si 1.069 2.931 23 H -0.274 1.274 24 H -0.274 1.274 25 H -0.272 1.272 26 C -0.141 4.141 27 C -0.107 4.107 28 H 0.090 0.910 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.126 0.874 35 H 0.153 0.847 36 H 0.403 0.597 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.108 0.892 41 H 0.299 0.701 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.053 -13.338 4.700 15.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.250 6.250 3 C 0.061 3.939 4 C -0.133 4.133 5 C -0.161 4.161 6 C -0.113 4.113 7 C -0.148 4.148 8 C 0.080 3.920 9 N -0.329 5.329 10 C 0.358 3.642 11 O -0.392 6.392 12 C -0.274 4.274 13 C -0.062 4.062 14 C -0.275 4.275 15 C -0.094 4.094 16 C -0.215 4.215 17 C 0.118 3.882 18 C -0.489 4.489 19 H 0.121 0.879 20 C -0.189 4.189 21 N -0.411 5.411 22 Si 0.891 3.109 23 H -0.198 1.198 24 H -0.199 1.199 25 H -0.197 1.197 26 C -0.144 4.144 27 C -0.164 4.164 28 H 0.109 0.891 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.143 0.857 35 H 0.170 0.830 36 H 0.239 0.761 37 H 0.108 0.892 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.126 0.874 41 H 0.112 0.888 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.962 -11.366 5.845 13.710 hybrid contribution -0.046 -1.813 -1.194 2.171 sum -5.008 -13.178 4.651 14.845 Atomic orbital electron populations 1.22945 0.79599 1.02683 1.00756 1.85972 1.19403 1.25249 1.94354 1.17918 0.98710 0.86284 0.91025 1.20025 1.03112 0.95548 0.94661 1.20602 1.01170 1.00598 0.93714 1.20828 0.98582 0.93781 0.98061 1.21635 1.00898 1.01894 0.90332 1.17505 0.95970 0.91739 0.86773 1.43755 1.70257 1.07915 1.10958 1.18546 0.75875 0.79753 0.90060 1.90659 1.48253 1.62858 1.37437 1.19240 1.22000 0.94924 0.91248 1.20712 0.95932 0.96570 0.92958 1.20257 1.15979 0.94473 0.96769 1.20770 0.97567 0.93877 0.97147 1.21271 1.08759 0.98973 0.92539 1.17464 0.87831 0.90108 0.92841 1.21142 1.22261 0.99346 1.06136 0.87863 1.27272 0.95168 0.98634 0.97858 1.70380 1.11786 1.39524 1.19360 0.83583 0.76255 0.75098 0.75926 1.19823 1.19900 1.19681 1.19841 1.03181 0.95802 0.95619 1.20587 1.01922 1.00090 0.93759 0.89147 0.93661 0.93608 0.92000 0.91365 0.91760 0.85652 0.83004 0.76063 0.89153 0.88697 0.88701 0.87428 0.88759 0.91254 0.91435 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.76 101.05 1.09 1.42 16 2 O -0.33 -4.31 8.68 -19.43 -0.17 -4.48 16 3 C 0.10 1.53 5.66 -39.25 -0.22 1.30 16 4 C -0.13 -1.86 5.90 -104.43 -0.62 -2.47 16 5 C -0.10 -1.13 9.79 36.00 0.35 -0.78 16 6 C -0.09 -1.42 9.69 -39.63 -0.38 -1.80 16 7 C -0.13 -2.28 8.73 -39.36 -0.34 -2.63 16 8 C 0.18 3.10 6.35 -83.75 -0.53 2.57 16 9 N -0.68 -12.44 4.78 -10.86 -0.05 -12.50 16 10 C 0.56 12.62 7.58 -12.54 -0.10 12.53 16 11 O -0.51 -12.92 10.79 5.25 0.06 -12.86 16 12 C -0.27 -6.31 5.92 -104.37 -0.62 -6.93 16 13 C -0.04 -0.87 9.53 -39.22 -0.37 -1.24 16 14 C -0.26 -5.14 10.03 -39.37 -0.39 -5.54 16 15 C -0.07 -1.59 10.01 -39.60 -0.40 -1.99 16 16 C -0.20 -4.72 7.92 -38.88 -0.31 -5.03 16 17 C 0.12 3.13 5.14 -106.53 -0.55 2.58 16 18 C -0.46 -12.25 7.58 -37.82 -0.29 -12.54 16 19 H 0.10 2.85 6.05 -52.49 -0.32 2.54 16 20 C 0.03 0.83 5.03 -17.30 -0.09 0.74 16 21 N -0.79 -20.49 12.57 55.56 0.70 -19.80 16 22 Si 1.07 21.88 29.98 -169.99 -5.10 16.78 16 23 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 24 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 25 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 26 C -0.14 -2.16 5.91 -104.28 -0.62 -2.78 16 27 C -0.11 -1.35 9.23 36.01 0.33 -1.02 16 28 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.44 7.23 -51.93 -0.38 0.07 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.72 7.53 -51.93 -0.39 0.33 16 33 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 34 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 35 H 0.15 3.08 5.89 -52.49 -0.31 2.77 16 36 H 0.40 6.28 5.75 -40.82 -0.23 6.04 16 37 H 0.09 1.50 6.42 -52.48 -0.34 1.17 16 38 H 0.09 1.65 8.06 -52.49 -0.42 1.22 16 39 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 40 H 0.11 2.64 7.02 -52.49 -0.37 2.27 16 41 H 0.30 7.95 6.68 -40.82 -0.27 7.68 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.07 0.77 6.30 -51.93 -0.33 0.45 16 44 H 0.06 0.83 7.11 -51.93 -0.37 0.46 16 LS Contribution 359.67 15.07 5.42 5.42 Total: -1.00 -28.96 359.67 -8.67 -37.62 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -5.48 Total: 13.38 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: -4.05 Total: -23.58 kcal Atomic # 7 Polarization: -32.94 SS G_CDS: 0.65 Total: -32.29 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: -0.11 Total: -17.34 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.10 Total: 16.78 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.96 -8.67 -37.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625458637.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.933 kcal (2) G-P(sol) polarization free energy of solvation -28.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds